Wall clock time and date at job start Tue Mar 31 2020 20:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99935 * 2 1 3 5 5 N 1.46905 * 109.47150 * 184.99676 * 4 2 1 6 6 C 1.46900 * 111.00154 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.46977 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00027 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99801 * 180.02562 * 7 6 5 10 10 C 1.37089 * 120.00278 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99666 * 359.97438 * 10 9 7 12 12 C 1.38955 * 120.00524 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99255 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00119 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47127 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47316 * 119.99770 * 14 12 10 17 17 H 1.48501 * 109.47305 * 239.99577 * 14 12 10 18 18 N 1.46506 * 109.47035 * 119.99770 * 2 1 3 19 19 C 1.46505 * 119.99873 * 60.00451 * 18 2 1 20 20 C 1.34775 * 119.99979 * 239.99713 * 18 2 1 21 21 O 1.21287 * 120.00123 * 0.02562 * 20 18 2 22 22 C 1.50696 * 119.99816 * 179.97438 * 20 18 2 23 23 C 1.53000 * 109.47210 * 180.02562 * 22 20 18 24 24 C 1.50696 * 109.47210 * 179.97438 * 23 22 20 25 25 C 1.39865 * 126.04489 * 269.69175 * 24 23 22 26 26 N 1.30834 * 108.20613 * 179.82193 * 25 24 23 27 27 N 1.40078 * 108.20424 * 0.43774 * 26 25 24 28 28 H 0.97003 * 126.04372 * 179.69988 * 27 26 25 29 29 C 1.34949 * 107.92670 * 359.72289 * 27 26 25 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47059 * 299.99602 * 1 2 3 32 32 H 1.08992 * 109.47060 * 60.00086 * 1 2 3 33 33 H 1.08993 * 109.47322 * 304.99960 * 4 2 1 34 34 H 1.09004 * 109.46881 * 65.00322 * 4 2 1 35 35 H 1.00903 * 110.99958 * 303.95831 * 5 4 2 36 36 H 1.08996 * 109.46846 * 300.00213 * 6 5 4 37 37 H 1.08999 * 109.47196 * 60.00064 * 6 5 4 38 38 H 0.97009 * 119.99700 * 0.02562 * 9 7 6 39 39 H 0.97004 * 119.99525 * 180.02562 * 13 12 10 40 40 H 1.08999 * 109.46984 * 89.99607 * 19 18 2 41 41 H 1.08993 * 109.46873 * 209.99600 * 19 18 2 42 42 H 1.08995 * 109.46826 * 329.99614 * 19 18 2 43 43 H 1.08995 * 109.47420 * 300.00726 * 22 20 18 44 44 H 1.09004 * 109.47053 * 60.00896 * 22 20 18 45 45 H 1.08995 * 109.47333 * 300.00549 * 23 22 20 46 46 H 1.09004 * 109.46568 * 60.00369 * 23 22 20 47 47 H 1.08012 * 125.89555 * 359.97438 * 25 24 23 48 48 H 1.07996 * 126.12795 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8266 -1.1904 6 6 4.0305 -1.5148 -2.3767 7 6 5.5318 -1.6043 -2.2806 8 8 6.1067 -1.1400 -1.3189 9 7 6.2356 -2.1993 -3.2640 10 6 7.6013 -2.2812 -3.1764 11 1 8.1131 -1.8685 -2.3196 12 6 8.3271 -2.8942 -4.1905 13 7 7.7042 -3.3958 -5.2332 14 14 10.1879 -3.0051 -4.0715 15 1 10.6419 -2.3688 -2.8089 16 1 10.6006 -4.4315 -4.0837 17 1 10.8007 -2.3027 -5.2275 18 7 2.0184 -0.6906 1.1962 19 6 1.6645 -2.0932 1.4281 20 6 2.7932 -0.0356 2.0834 21 8 3.0859 1.1257 1.8916 22 6 3.2950 -0.7458 3.3141 23 6 4.1447 0.2160 4.1472 24 6 4.6460 -0.4940 5.3782 25 6 3.9989 -0.5498 6.6170 26 7 4.7377 -1.2575 7.4325 27 7 5.8848 -1.6666 6.7405 28 1 6.6092 -2.2011 7.1018 29 6 5.8046 -1.1853 5.4823 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6055 -1.7197 -1.2951 34 1 1.7517 -0.1582 -2.1369 35 1 3.9280 0.0827 -1.0823 36 1 3.6097 -2.5188 -2.4308 37 1 3.7559 -0.9570 -3.2720 38 1 5.7758 -2.5696 -4.0337 39 1 8.2108 -3.8240 -5.9410 40 1 2.4158 -2.7377 0.9717 41 1 1.6239 -2.2852 2.5002 42 1 0.6905 -2.3002 0.9847 43 1 2.4471 -1.0880 3.9073 44 1 3.9005 -1.6024 3.0178 45 1 4.9926 0.5585 3.5542 46 1 3.5389 1.0724 4.4435 47 1 3.0516 -0.0903 6.8579 48 1 6.5341 -1.3269 4.6986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268090758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:51 Heat of formation + Delta-G solvation = 0.282530 kcal Electronic energy + Delta-G solvation = -28949.045938 eV Core-core repulsion = 24847.585728 eV Total energy + Delta-G solvation = -4101.460210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.32568 -39.93125 -38.26128 -36.82772 -34.62709 -34.04610 -33.73672 -31.78954 -31.38422 -31.16829 -29.05043 -27.57410 -26.84418 -25.06904 -24.50387 -23.13506 -22.14950 -21.16410 -20.06466 -19.28784 -18.81779 -17.98012 -17.86005 -17.01267 -16.43755 -15.80408 -15.70978 -15.16811 -14.72906 -14.67991 -14.56467 -14.42908 -14.03681 -13.88705 -13.69789 -13.47086 -13.24196 -13.01563 -12.81347 -12.65714 -12.46305 -12.35699 -12.17355 -11.91663 -11.85302 -11.68312 -11.48264 -11.41999 -11.15092 -11.05502 -10.84531 -10.63952 -10.34728 -10.22226 -9.82516 -9.60380 -9.51316 -8.61983 -8.55950 -8.37600 -8.01411 -7.94296 -6.41552 -3.82022 1.73954 2.58678 2.74655 2.85744 3.13789 3.15959 3.26379 3.33655 3.92638 4.09510 4.31616 4.56524 4.71906 4.79832 4.90289 5.02894 5.06557 5.13363 5.15549 5.18445 5.23335 5.28128 5.35179 5.42514 5.48760 5.55383 5.56627 5.60216 5.68157 5.72712 5.81329 5.84407 5.92486 5.98981 6.06349 6.18465 6.22331 6.27837 6.50198 6.63323 7.08667 7.25602 7.47358 7.52530 7.55586 7.70034 8.07359 8.38457 8.62388 9.18786 9.55450 10.07332 10.76453 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008376 B = 0.002824 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.181177 B = 9914.038471 C =12721.592357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 H 0.099 0.901 4 C 0.048 3.952 5 N -0.662 5.662 6 C 0.051 3.949 7 C 0.442 3.558 8 O -0.580 6.580 9 N -0.566 5.566 10 C -0.297 4.297 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.903 5.903 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.282 1.282 18 N -0.595 5.595 19 C 0.080 3.920 20 C 0.522 3.478 21 O -0.546 6.546 22 C -0.130 4.130 23 C -0.025 4.025 24 C -0.234 4.234 25 C 0.054 3.946 26 N -0.302 5.302 27 N -0.480 5.480 28 H 0.439 0.561 29 C 0.064 3.936 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.351 0.649 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.392 0.608 39 H 0.270 0.730 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.181 0.819 48 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.599 1.875 15.205 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.117 0.883 4 C -0.082 4.082 5 N -0.295 5.295 6 C -0.081 4.081 7 C 0.227 3.773 8 O -0.464 6.464 9 N -0.203 5.203 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.208 1.208 18 N -0.328 5.328 19 C -0.063 4.063 20 C 0.311 3.689 21 O -0.424 6.424 22 C -0.170 4.170 23 C -0.064 4.064 24 C -0.246 4.246 25 C -0.132 4.132 26 N -0.125 5.125 27 N -0.188 5.188 28 H 0.282 0.718 29 C -0.083 4.083 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.170 0.830 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.225 0.775 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.198 0.802 48 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -13.874 1.668 17.149 22.122 hybrid contribution 0.826 0.063 -2.080 2.239 sum -13.048 1.730 15.069 20.008 Atomic orbital electron populations 1.22091 0.94856 1.02289 1.02466 1.21052 0.93340 0.98060 0.84248 0.88259 1.22351 0.89672 1.00389 0.95824 1.60023 1.03064 1.26914 1.39454 1.21664 0.95246 0.99743 0.91493 1.19823 0.88047 0.84416 0.84987 1.90531 1.71106 1.51604 1.33133 1.41874 1.07401 1.51215 1.19796 1.19741 0.81542 1.34976 1.06391 0.87930 1.25256 1.00644 0.96882 0.95254 1.69623 1.36561 1.38879 1.09384 0.85810 0.82314 0.77872 0.78411 1.19229 1.20773 1.20783 1.47548 1.50933 1.12153 1.22142 1.21726 1.00981 0.82178 1.01445 1.20606 0.77193 0.86785 0.84309 1.90669 1.57327 1.17347 1.77008 1.21674 1.00925 1.00161 0.94263 1.19600 0.99612 0.95979 0.91259 1.20179 0.97458 1.09560 0.97381 1.23832 0.99903 0.97904 0.91602 1.77290 0.95891 1.18490 1.20781 1.46306 1.19195 1.44100 1.09165 0.71787 1.22568 0.99645 0.97526 0.88579 0.92188 0.92109 0.91461 0.90982 0.94649 0.82965 0.89852 0.94083 0.77525 0.91971 0.91831 0.91445 0.91518 0.89475 0.88787 0.90307 0.90650 0.80161 0.80388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.17 37.16 0.34 -0.95 16 2 C 0.14 1.54 2.88 -67.93 -0.20 1.34 16 3 H 0.10 1.33 6.90 -51.93 -0.36 0.98 16 4 C 0.05 0.58 4.98 -3.82 -0.02 0.56 16 5 N -0.66 -10.76 5.85 -115.06 -0.67 -11.43 16 6 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 7 C 0.44 10.46 7.82 -10.99 -0.09 10.37 16 8 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 9 N -0.57 -14.37 5.29 -10.96 -0.06 -14.42 16 10 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 11 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 12 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 13 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 14 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 N -0.59 -6.85 2.49 -173.93 -0.43 -7.28 16 19 C 0.08 0.70 9.40 59.85 0.56 1.27 16 20 C 0.52 7.00 7.67 -10.99 -0.08 6.91 16 21 O -0.55 -9.25 15.31 5.55 0.08 -9.17 16 22 C -0.13 -1.36 4.23 -27.88 -0.12 -1.48 16 23 C -0.03 -0.28 4.99 -27.88 -0.14 -0.42 16 24 C -0.23 -2.39 5.35 -105.06 -0.56 -2.95 16 25 C 0.05 0.54 11.96 -17.37 -0.21 0.34 16 26 N -0.30 -3.37 12.70 30.63 0.39 -2.98 16 27 N -0.48 -4.35 7.36 30.45 0.22 -4.13 16 28 H 0.44 2.65 8.96 -182.61 -1.64 1.01 16 29 C 0.06 0.60 11.90 -17.22 -0.20 0.40 16 30 H 0.06 0.42 6.66 -51.93 -0.35 0.08 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.79 7.84 -51.93 -0.41 0.38 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.35 6.41 8.43 -39.29 -0.33 6.08 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.47 6.44 -51.93 -0.33 0.14 16 42 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 43 H 0.09 0.72 7.40 -51.93 -0.38 0.34 16 44 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 45 H 0.08 1.00 8.10 -51.93 -0.42 0.57 16 46 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 47 H 0.18 1.32 8.06 -52.48 -0.42 0.90 16 48 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 402.11 15.07 6.06 6.06 Total: -1.00 -35.43 402.11 -8.21 -43.64 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -8.61 Total: 15.02 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -0.99 Total: 8.28 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: 0.17 Total: -64.11 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: 0.17 Total: -24.93 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.43 -8.21 -43.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268090758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.921 kcal (2) G-P(sol) polarization free energy of solvation -35.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds