Wall clock time and date at job start Tue Mar 31 2020 20:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47216 * 2 1 4 4 C 1.53005 * 109.47210 * 120.00434 * 2 1 3 5 5 N 1.46897 * 109.46989 * 174.99944 * 4 2 1 6 6 C 1.46904 * 110.99692 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.46880 * 180.02562 * 6 5 4 8 8 O 1.21290 * 120.00408 * 359.97438 * 7 6 5 9 9 N 1.34786 * 119.99839 * 179.97438 * 7 6 5 10 10 C 1.37095 * 119.99839 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00170 * 359.97438 * 10 9 7 12 12 C 1.38954 * 119.99952 * 180.02562 * 10 9 7 13 13 N 1.31415 * 119.99817 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99961 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47450 * 89.99735 * 14 12 10 16 16 H 1.48504 * 109.46935 * 209.99757 * 14 12 10 17 17 H 1.48498 * 109.47528 * 329.99390 * 14 12 10 18 18 N 1.46504 * 109.46878 * 239.99930 * 2 1 3 19 19 C 1.46500 * 120.00028 * 300.00124 * 18 2 1 20 20 C 1.34776 * 120.00102 * 120.00071 * 18 2 1 21 21 O 1.21284 * 119.99993 * 0.02562 * 20 18 2 22 22 C 1.50698 * 120.00297 * 179.97438 * 20 18 2 23 23 C 1.52998 * 109.47192 * 180.02562 * 22 20 18 24 24 C 1.50698 * 109.47192 * 179.97438 * 23 22 20 25 25 C 1.39874 * 126.04031 * 269.99886 * 24 23 22 26 26 N 1.30836 * 108.20052 * 179.73886 * 25 24 23 27 27 N 1.40084 * 108.20904 * 0.40640 * 26 25 24 28 28 H 0.97001 * 126.04219 * 179.85882 * 27 26 25 29 29 C 1.34947 * 107.92164 * 359.58781 * 27 26 25 30 30 H 1.09003 * 109.46985 * 299.99910 * 1 2 3 31 31 H 1.08998 * 109.47226 * 60.00194 * 1 2 3 32 32 H 1.09002 * 109.47308 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46555 * 294.99936 * 4 2 1 34 34 H 1.08998 * 109.47168 * 54.99563 * 4 2 1 35 35 H 1.00896 * 111.00578 * 56.04509 * 5 4 2 36 36 H 1.09004 * 109.47018 * 299.99374 * 6 5 4 37 37 H 1.08990 * 109.47445 * 59.99488 * 6 5 4 38 38 H 0.96996 * 119.99832 * 359.97438 * 9 7 6 39 39 H 0.96994 * 119.99538 * 179.97438 * 13 12 10 40 40 H 1.09007 * 109.47081 * 269.99884 * 19 18 2 41 41 H 1.08997 * 109.47304 * 30.00160 * 19 18 2 42 42 H 1.09003 * 109.47358 * 150.00368 * 19 18 2 43 43 H 1.08994 * 109.46963 * 59.99584 * 22 20 18 44 44 H 1.09004 * 109.46771 * 299.99960 * 22 20 18 45 45 H 1.09007 * 109.47384 * 60.00098 * 23 22 20 46 46 H 1.09002 * 109.46954 * 300.00115 * 23 22 20 47 47 H 1.08001 * 125.89534 * 0.02562 * 25 24 23 48 48 H 1.08007 * 126.12498 * 180.26712 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5040 -0.8268 1.1903 6 6 4.0304 -1.5150 2.3766 7 6 5.5317 -1.6035 2.2812 8 8 6.1067 -1.1393 1.3193 9 7 6.2356 -2.1984 3.2646 10 6 7.6014 -2.2794 3.1775 11 1 8.1133 -1.8668 2.3207 12 6 8.3271 -2.8932 4.1912 13 7 7.7042 -3.3956 5.2335 14 14 10.1880 -3.0028 4.0728 15 1 10.7958 -1.8035 4.7033 16 1 10.6577 -4.2235 4.7763 17 1 10.5903 -3.0689 2.6449 18 7 2.0183 -0.6906 -1.1962 19 6 1.6643 -2.0932 -1.4280 20 6 2.7931 -0.0357 -2.0834 21 8 3.0866 1.1253 -1.8913 22 6 3.2959 -0.7463 -3.3136 23 6 4.1463 0.2152 -4.1462 24 6 4.6496 -0.4955 -5.3760 25 6 5.8476 -1.2098 -5.4814 26 7 5.9337 -1.6863 -6.6968 27 7 4.7961 -1.2819 -7.4072 28 1 4.5974 -1.4908 -8.3334 29 6 4.0224 -0.5555 -6.5736 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7516 -0.1584 2.1369 34 1 1.6054 -1.7199 1.2951 35 1 3.9280 0.0824 1.0823 36 1 3.7559 -0.9572 3.2720 37 1 3.6096 -2.5189 2.4308 38 1 5.7759 -2.5693 4.0340 39 1 8.2107 -3.8244 5.9409 40 1 2.4157 -2.7378 -0.9717 41 1 0.6903 -2.3002 -0.9847 42 1 1.6237 -2.2853 -2.5002 43 1 2.4484 -1.0892 -3.9069 44 1 3.9016 -1.6024 -3.0165 45 1 4.9940 0.5578 -3.5525 46 1 3.5409 1.0717 -4.4431 47 1 6.5736 -1.3482 -4.6939 48 1 3.0726 -0.1033 -6.8183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268090774.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:54 Heat of formation + Delta-G solvation = 1.217351 kcal Electronic energy + Delta-G solvation = -28946.123191 eV Core-core repulsion = 24844.703518 eV Total energy + Delta-G solvation = -4101.419673 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32571 -39.93312 -38.23293 -36.82350 -34.61467 -34.04948 -33.71069 -31.78719 -31.38297 -31.13912 -29.06102 -27.55999 -26.84455 -25.05489 -24.50395 -23.11801 -22.12490 -21.16320 -20.06983 -19.26538 -18.81350 -18.01931 -17.83183 -17.01425 -16.42033 -15.84291 -15.66898 -15.15305 -14.71167 -14.68660 -14.53654 -14.41448 -13.98181 -13.89487 -13.70119 -13.45062 -13.23905 -13.08354 -12.77616 -12.59126 -12.49680 -12.29599 -12.22613 -11.90972 -11.86699 -11.65887 -11.45710 -11.39634 -11.13620 -11.00562 -10.84725 -10.62211 -10.36259 -10.18186 -9.80540 -9.60742 -9.46935 -8.63322 -8.55338 -8.35549 -7.99097 -7.91301 -6.38276 -3.78708 1.71752 2.61280 2.73473 2.85337 3.13845 3.20819 3.29162 3.35605 3.95674 4.12006 4.33494 4.56533 4.70718 4.76315 4.90631 5.01357 5.06465 5.08840 5.15864 5.18935 5.24855 5.30037 5.40065 5.41495 5.49245 5.53930 5.55767 5.60311 5.65991 5.75611 5.82981 5.84885 5.91958 6.01193 6.06199 6.16491 6.25762 6.30584 6.51527 6.63233 7.07056 7.27326 7.49147 7.52332 7.58844 7.71812 8.10486 8.38203 8.65651 9.22027 9.58560 10.10526 10.79664 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008379 B = 0.002825 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.058731 B = 9909.286619 C =12715.288690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 H 0.099 0.901 4 C 0.048 3.952 5 N -0.662 5.662 6 C 0.052 3.948 7 C 0.441 3.559 8 O -0.579 6.579 9 N -0.566 5.566 10 C -0.297 4.297 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.904 5.904 14 Si 0.929 3.071 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 N -0.595 5.595 19 C 0.080 3.920 20 C 0.522 3.478 21 O -0.546 6.546 22 C -0.130 4.130 23 C -0.026 4.026 24 C -0.230 4.230 25 C 0.060 3.940 26 N -0.298 5.298 27 N -0.483 5.483 28 H 0.437 0.563 29 C 0.055 3.945 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.351 0.649 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.186 0.814 48 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.816 3.002 -17.146 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.117 0.883 4 C -0.082 4.082 5 N -0.294 5.294 6 C -0.081 4.081 7 C 0.227 3.773 8 O -0.463 6.463 9 N -0.203 5.203 10 C -0.427 4.427 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.545 5.545 14 Si 0.756 3.244 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.194 1.194 18 N -0.328 5.328 19 C -0.063 4.063 20 C 0.311 3.689 21 O -0.423 6.423 22 C -0.170 4.170 23 C -0.065 4.065 24 C -0.241 4.241 25 C -0.127 4.127 26 N -0.120 5.120 27 N -0.191 5.191 28 H 0.280 0.720 29 C -0.093 4.093 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.170 0.830 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.203 0.797 48 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -16.479 2.572 -18.713 25.067 hybrid contribution -0.159 0.425 1.464 1.533 sum -16.639 2.996 -17.249 24.153 Atomic orbital electron populations 1.22091 0.94885 1.02275 1.02437 1.21052 0.93308 0.98069 0.84273 0.88259 1.22349 0.89722 1.00374 0.95791 1.60019 1.03019 1.26922 1.39484 1.21663 0.95277 0.99727 0.91455 1.19825 0.88038 0.84458 0.85003 1.90538 1.71084 1.51567 1.33090 1.41867 1.07382 1.51210 1.19818 1.19701 0.81542 1.34993 1.06426 0.87950 1.25252 1.00641 0.96848 0.95268 1.69615 1.36634 1.38861 1.09411 0.85866 0.82280 0.77590 0.78618 1.20452 1.20967 1.19370 1.47546 1.50950 1.12146 1.22129 1.21727 1.00998 0.82206 1.01395 1.20603 0.77181 0.86779 0.84334 1.90669 1.57275 1.17385 1.77013 1.21673 1.00720 1.00312 0.94313 1.19611 0.99669 0.95787 0.91443 1.20209 0.97772 1.09543 0.96618 1.23995 0.97771 0.96104 0.94817 1.77359 1.05161 1.23037 1.06484 1.46307 1.16789 1.42730 1.13226 0.71980 1.22389 0.97901 0.97771 0.91190 0.91462 0.92152 0.92191 0.94662 0.90986 0.82950 0.94108 0.89849 0.77540 0.91945 0.91758 0.91537 0.91503 0.89685 0.88562 0.89968 0.90933 0.79692 0.80878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.17 37.16 0.34 -0.94 16 2 C 0.14 1.54 2.88 -67.93 -0.20 1.34 16 3 H 0.10 1.33 6.90 -51.93 -0.36 0.97 16 4 C 0.05 0.58 4.98 -3.82 -0.02 0.56 16 5 N -0.66 -10.87 5.85 -115.06 -0.67 -11.54 16 6 C 0.05 0.92 6.17 -4.97 -0.03 0.88 16 7 C 0.44 10.57 7.82 -10.98 -0.09 10.49 16 8 O -0.58 -16.02 15.78 5.55 0.09 -15.94 16 9 N -0.57 -14.53 5.29 -10.96 -0.06 -14.58 16 10 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 11 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 12 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 13 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 14 Si 0.93 21.37 29.55 -169.99 -5.02 16.34 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 N -0.59 -6.84 2.48 -173.93 -0.43 -7.27 16 19 C 0.08 0.70 9.40 59.85 0.56 1.27 16 20 C 0.52 6.99 7.67 -10.99 -0.08 6.90 16 21 O -0.55 -9.24 15.31 5.55 0.09 -9.16 16 22 C -0.13 -1.36 4.23 -27.88 -0.12 -1.48 16 23 C -0.03 -0.28 4.99 -27.88 -0.14 -0.42 16 24 C -0.23 -2.34 5.35 -105.05 -0.56 -2.90 16 25 C 0.06 0.69 11.96 -17.36 -0.21 0.48 16 26 N -0.30 -3.56 12.70 30.63 0.39 -3.17 16 27 N -0.48 -4.07 7.36 30.45 0.22 -3.84 16 28 H 0.44 2.20 8.96 -182.61 -1.64 0.56 16 29 C 0.05 0.43 11.90 -17.22 -0.21 0.23 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.42 6.66 -51.93 -0.35 0.07 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.79 7.84 -51.93 -0.41 0.39 16 35 H 0.35 6.47 8.43 -39.29 -0.33 6.14 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.39 9.60 7.90 -40.82 -0.32 9.27 16 39 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.46 6.43 -51.93 -0.33 0.13 16 42 H 0.07 0.46 6.44 -51.93 -0.33 0.13 16 43 H 0.08 0.67 7.40 -51.93 -0.38 0.29 16 44 H 0.10 1.07 8.11 -51.93 -0.42 0.64 16 45 H 0.08 1.07 8.10 -51.93 -0.42 0.64 16 46 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 47 H 0.19 1.95 8.06 -52.49 -0.42 1.52 16 48 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 402.11 15.07 6.06 6.06 Total: -1.00 -35.99 402.11 -8.21 -44.20 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -8.61 Total: 14.66 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -0.99 Total: 8.35 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: 0.17 Total: -64.52 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: 0.17 Total: -25.09 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.99 -8.21 -44.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268090774.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.416 kcal (2) G-P(sol) polarization free energy of solvation -35.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds