Wall clock time and date at job start Tue Mar 31 2020 20:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47216 * 2 1 4 4 C 1.53005 * 109.47210 * 120.00434 * 2 1 3 5 5 N 1.46897 * 109.46989 * 174.99944 * 4 2 1 6 6 C 1.46904 * 110.99692 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.46880 * 180.02562 * 6 5 4 8 8 O 1.21290 * 120.00408 * 359.97438 * 7 6 5 9 9 N 1.34786 * 119.99839 * 179.97438 * 7 6 5 10 10 C 1.37095 * 119.99839 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00170 * 359.97438 * 10 9 7 12 12 C 1.38954 * 119.99952 * 180.02562 * 10 9 7 13 13 N 1.31415 * 119.99817 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99961 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47450 * 89.99735 * 14 12 10 16 16 H 1.48504 * 109.46935 * 209.99757 * 14 12 10 17 17 H 1.48498 * 109.47528 * 329.99390 * 14 12 10 18 18 N 1.46504 * 109.46878 * 239.99930 * 2 1 3 19 19 C 1.46500 * 120.00028 * 300.00124 * 18 2 1 20 20 C 1.34776 * 120.00102 * 120.00071 * 18 2 1 21 21 O 1.21284 * 119.99993 * 0.02562 * 20 18 2 22 22 C 1.50698 * 120.00297 * 179.97438 * 20 18 2 23 23 C 1.52998 * 109.47192 * 180.02562 * 22 20 18 24 24 C 1.50698 * 109.47192 * 179.97438 * 23 22 20 25 25 C 1.39874 * 126.04031 * 269.99886 * 24 23 22 26 26 N 1.30836 * 108.20052 * 179.73886 * 25 24 23 27 27 N 1.40084 * 108.20904 * 0.40640 * 26 25 24 28 28 H 0.97001 * 126.04219 * 179.85882 * 27 26 25 29 29 C 1.34947 * 107.92164 * 359.58781 * 27 26 25 30 30 H 1.09003 * 109.46985 * 299.99910 * 1 2 3 31 31 H 1.08998 * 109.47226 * 60.00194 * 1 2 3 32 32 H 1.09002 * 109.47308 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46555 * 294.99936 * 4 2 1 34 34 H 1.08998 * 109.47168 * 54.99563 * 4 2 1 35 35 H 1.00896 * 111.00578 * 56.04509 * 5 4 2 36 36 H 1.09004 * 109.47018 * 299.99374 * 6 5 4 37 37 H 1.08990 * 109.47445 * 59.99488 * 6 5 4 38 38 H 0.96996 * 119.99832 * 359.97438 * 9 7 6 39 39 H 0.96994 * 119.99538 * 179.97438 * 13 12 10 40 40 H 1.09007 * 109.47081 * 269.99884 * 19 18 2 41 41 H 1.08997 * 109.47304 * 30.00160 * 19 18 2 42 42 H 1.09003 * 109.47358 * 150.00368 * 19 18 2 43 43 H 1.08994 * 109.46963 * 59.99584 * 22 20 18 44 44 H 1.09004 * 109.46771 * 299.99960 * 22 20 18 45 45 H 1.09007 * 109.47384 * 60.00098 * 23 22 20 46 46 H 1.09002 * 109.46954 * 300.00115 * 23 22 20 47 47 H 1.08001 * 125.89534 * 0.02562 * 25 24 23 48 48 H 1.08007 * 126.12498 * 180.26712 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5040 -0.8268 1.1903 6 6 4.0304 -1.5150 2.3766 7 6 5.5317 -1.6035 2.2812 8 8 6.1067 -1.1393 1.3193 9 7 6.2356 -2.1984 3.2646 10 6 7.6014 -2.2794 3.1775 11 1 8.1133 -1.8668 2.3207 12 6 8.3271 -2.8932 4.1912 13 7 7.7042 -3.3956 5.2335 14 14 10.1880 -3.0028 4.0728 15 1 10.7958 -1.8035 4.7033 16 1 10.6577 -4.2235 4.7763 17 1 10.5903 -3.0689 2.6449 18 7 2.0183 -0.6906 -1.1962 19 6 1.6643 -2.0932 -1.4280 20 6 2.7931 -0.0357 -2.0834 21 8 3.0866 1.1253 -1.8913 22 6 3.2959 -0.7463 -3.3136 23 6 4.1463 0.2152 -4.1462 24 6 4.6496 -0.4955 -5.3760 25 6 5.8476 -1.2098 -5.4814 26 7 5.9337 -1.6863 -6.6968 27 7 4.7961 -1.2819 -7.4072 28 1 4.5974 -1.4908 -8.3334 29 6 4.0224 -0.5555 -6.5736 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7516 -0.1584 2.1369 34 1 1.6054 -1.7199 1.2951 35 1 3.9280 0.0824 1.0823 36 1 3.7559 -0.9572 3.2720 37 1 3.6096 -2.5189 2.4308 38 1 5.7759 -2.5693 4.0340 39 1 8.2107 -3.8244 5.9409 40 1 2.4157 -2.7378 -0.9717 41 1 0.6903 -2.3002 -0.9847 42 1 1.6237 -2.2853 -2.5002 43 1 2.4484 -1.0892 -3.9069 44 1 3.9016 -1.6024 -3.0165 45 1 4.9940 0.5578 -3.5525 46 1 3.5409 1.0717 -4.4431 47 1 6.5736 -1.3482 -4.6939 48 1 3.0726 -0.1033 -6.8183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268090774.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:53 Heat of formation + Delta-G solvation = -26.604338 kcal Electronic energy + Delta-G solvation = -28947.329630 eV Core-core repulsion = 24844.703518 eV Total energy + Delta-G solvation = -4102.626112 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.08568 -40.91716 -40.10438 -37.93131 -36.13715 -35.49860 -34.90423 -33.27725 -32.64905 -32.16264 -29.86261 -28.94050 -27.64548 -26.67052 -25.48021 -24.45715 -22.91723 -22.07405 -21.09568 -20.80013 -19.96986 -19.73968 -18.78021 -17.95800 -17.86168 -17.11511 -16.77192 -16.49938 -16.37002 -15.97563 -15.52250 -15.41297 -15.22704 -15.17175 -14.93434 -14.61862 -14.34933 -14.09365 -13.86372 -13.59052 -13.51538 -13.37997 -13.19672 -13.11583 -13.03673 -12.82920 -12.75944 -12.67165 -12.48060 -12.40625 -12.12417 -11.99535 -11.70633 -11.51105 -11.44978 -10.65153 -10.57561 -10.35014 -10.01388 -9.45851 -9.38643 -9.26476 -8.47078 -5.95453 1.00402 1.37224 1.40901 1.53803 1.77684 1.85377 2.05841 2.11576 2.27216 2.30064 2.93977 3.20195 3.52380 3.70262 3.89483 4.03230 4.08473 4.21731 4.27807 4.31962 4.35024 4.39576 4.43621 4.52013 4.56748 4.65298 4.67720 4.70943 4.75048 4.80942 4.87811 4.89615 4.94629 5.10902 5.15906 5.30529 5.33921 5.39679 5.40656 5.68861 5.76286 5.90480 6.12712 6.33521 6.50081 6.60340 6.60777 6.74089 7.12989 7.40089 7.56471 8.12750 8.70448 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008379 B = 0.002825 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.058731 B = 9909.286619 C =12715.288690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.135 3.865 3 H 0.070 0.930 4 C 0.051 3.949 5 N -0.675 5.675 6 C 0.068 3.932 7 C 0.437 3.563 8 O -0.623 6.623 9 N -0.574 5.574 10 C -0.333 4.333 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.991 3.009 15 H -0.271 1.271 16 H -0.269 1.269 17 H -0.274 1.274 18 N -0.594 5.594 19 C 0.076 3.924 20 C 0.510 3.490 21 O -0.592 6.592 22 C -0.121 4.121 23 C -0.016 4.016 24 C -0.251 4.251 25 C 0.041 3.959 26 N -0.334 5.334 27 N -0.471 5.471 28 H 0.452 0.548 29 C 0.081 3.919 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.335 0.665 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.120 0.880 44 H 0.087 0.913 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.179 0.821 48 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.330 2.002 -17.639 26.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.030 3.970 3 H 0.088 0.912 4 C -0.078 4.078 5 N -0.306 5.306 6 C -0.065 4.065 7 C 0.224 3.776 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.462 4.462 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.815 3.185 15 H -0.197 1.197 16 H -0.193 1.193 17 H -0.199 1.199 18 N -0.325 5.325 19 C -0.066 4.066 20 C 0.300 3.700 21 O -0.474 6.474 22 C -0.160 4.160 23 C -0.055 4.055 24 C -0.262 4.262 25 C -0.145 4.145 26 N -0.157 5.157 27 N -0.180 5.180 28 H 0.299 0.701 29 C -0.068 4.068 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.152 0.848 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.138 0.862 44 H 0.106 0.894 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.196 0.804 48 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -19.040 1.518 -19.190 27.075 hybrid contribution 0.558 0.750 1.589 1.843 sum -18.482 2.268 -17.601 25.623 Atomic orbital electron populations 1.22004 0.91820 1.03661 1.03038 1.21095 0.95506 0.96433 0.83920 0.91173 1.22472 0.86740 1.01824 0.96807 1.60043 1.05645 1.25951 1.39009 1.21522 0.90377 1.01603 0.92965 1.20947 0.90672 0.82419 0.83548 1.90511 1.72817 1.52913 1.34636 1.41925 1.06817 1.51860 1.20516 1.19633 0.83115 1.36908 1.06569 0.90614 1.26012 1.04824 0.95819 0.94543 1.69667 1.38223 1.38591 1.09637 0.84957 0.76978 0.78238 0.78350 1.19696 1.19332 1.19890 1.47700 1.50041 1.13148 1.21614 1.21911 1.01579 0.80009 1.03080 1.21166 0.76979 0.86472 0.85366 1.90643 1.59056 1.19478 1.78182 1.21645 1.01554 0.99350 0.93486 1.19424 0.98490 0.96147 0.91462 1.20171 0.97997 1.10643 0.97427 1.24068 0.98575 0.96868 0.94944 1.77288 1.07134 1.24444 1.06854 1.46343 1.15796 1.41935 1.13939 0.70113 1.22939 0.98437 0.95700 0.89721 0.90280 0.92213 0.90298 0.93176 0.89056 0.84767 0.91932 0.87486 0.76963 0.91286 0.93571 0.88964 0.89323 0.86221 0.89444 0.93427 0.90475 0.80400 0.76617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.17 71.98 0.66 -1.30 16 2 C 0.13 2.87 2.88 44.99 0.13 3.00 16 3 H 0.07 1.93 6.90 -2.39 -0.02 1.91 16 4 C 0.05 1.13 4.98 86.31 0.43 1.56 16 5 N -0.68 -21.98 5.85 -517.93 -3.03 -25.02 16 6 C 0.07 2.34 6.17 85.56 0.53 2.87 16 7 C 0.44 21.36 7.82 87.65 0.69 22.05 16 8 O -0.62 -35.95 15.78 -3.06 -0.05 -35.99 16 9 N -0.57 -30.05 5.29 -306.98 -1.62 -31.68 16 10 C -0.33 -19.34 9.68 84.04 0.81 -18.53 16 11 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 13 N -0.92 -50.22 13.05 21.66 0.28 -49.94 16 14 Si 0.99 43.88 29.55 68.60 2.03 45.91 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 16 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 18 N -0.59 -13.05 2.48 -822.58 -2.04 -15.09 16 19 C 0.08 1.16 9.40 127.77 1.20 2.36 16 20 C 0.51 13.80 7.67 87.66 0.67 14.48 16 21 O -0.59 -21.08 15.31 -3.04 -0.05 -21.13 16 22 C -0.12 -2.47 4.23 29.85 0.13 -2.35 16 23 C -0.02 -0.36 4.99 29.85 0.15 -0.21 16 24 C -0.25 -5.02 5.35 -20.14 -0.11 -5.13 16 25 C 0.04 0.99 11.96 85.24 1.02 2.01 16 26 N -0.33 -7.98 12.70 -57.02 -0.72 -8.70 16 27 N -0.47 -7.11 7.36 -57.59 -0.42 -7.53 16 28 H 0.45 3.54 8.96 -213.33 -1.91 1.63 16 29 C 0.08 1.08 11.90 83.54 0.99 2.07 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.77 6.66 -2.39 -0.02 0.76 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.70 7.84 -2.39 -0.02 1.68 16 35 H 0.33 12.77 8.43 -89.70 -0.76 12.02 16 36 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.40 19.58 7.90 -92.71 -0.73 18.85 16 39 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 40 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.09 0.93 6.43 -2.39 -0.02 0.92 16 42 H 0.09 0.96 6.44 -2.39 -0.02 0.94 16 43 H 0.12 1.58 7.40 -2.39 -0.02 1.56 16 44 H 0.09 1.97 8.11 -2.39 -0.02 1.95 16 45 H 0.05 1.36 8.10 -2.38 -0.02 1.35 16 46 H 0.08 1.61 8.10 -2.39 -0.02 1.59 16 47 H 0.18 4.24 8.06 -2.91 -0.02 4.21 16 48 H 0.22 0.93 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -82.22 402.11 -0.25 -82.47 By element: Atomic # 1 Polarization: 46.42 SS G_CDS: -2.39 Total: 44.03 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 7.77 Total: 22.67 kcal Atomic # 7 Polarization: -130.40 SS G_CDS: -7.56 Total: -137.96 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -0.09 Total: -57.12 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -82.22 -0.25 -82.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268090774.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.870 kcal (2) G-P(sol) polarization free energy of solvation -82.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds