Wall clock time and date at job start Tue Mar 31 2020 20:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.47237 * 2 1 4 4 N 1.28441 * 125.18532 * 274.71451 * 3 2 1 5 5 C 1.30867 * 110.92359 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.06910 * 180.02562 * 5 4 3 7 7 C 1.39676 * 107.85947 * 359.77136 * 5 4 3 8 8 C 1.36594 * 125.18847 * 94.73155 * 3 2 1 9 9 C 1.47166 * 126.88873 * 359.94797 * 8 3 2 10 10 O 1.21633 * 119.99741 * 5.31629 * 9 8 3 11 11 N 1.34773 * 120.00348 * 185.31309 * 9 8 3 12 12 C 1.46498 * 120.00431 * 174.91125 * 11 9 8 13 13 H 1.09000 * 109.46455 * 35.27310 * 12 11 9 14 14 C 1.53005 * 109.47087 * 275.28009 * 12 11 9 15 15 C 1.52991 * 109.47489 * 155.27511 * 12 11 9 16 16 N 1.46894 * 109.47346 * 305.00337 * 15 12 11 17 17 C 1.46903 * 111.00118 * 179.97438 * 16 15 12 18 18 C 1.50703 * 109.47082 * 179.97438 * 17 16 15 19 19 O 1.21292 * 120.00014 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99911 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99803 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00156 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00246 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99515 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00257 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47365 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47063 * 120.00307 * 25 23 21 28 28 H 1.48497 * 109.47075 * 239.99965 * 25 23 21 29 29 H 1.09005 * 109.47153 * 299.99578 * 1 2 3 30 30 H 1.08996 * 109.47264 * 59.99829 * 1 2 3 31 31 H 1.08998 * 109.47067 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47355 * 240.00249 * 2 1 3 33 33 H 1.09003 * 109.47170 * 119.99800 * 2 1 3 34 34 H 1.09000 * 109.47711 * 89.97408 * 6 5 4 35 35 H 1.09002 * 109.47227 * 209.97201 * 6 5 4 36 36 H 1.08994 * 109.47340 * 329.96802 * 6 5 4 37 37 H 1.08006 * 127.32045 * 180.23742 * 7 5 4 38 38 H 0.97001 * 119.99627 * 355.19005 * 11 9 8 39 39 H 1.08999 * 109.46792 * 299.99569 * 14 12 11 40 40 H 1.09004 * 109.47211 * 59.99170 * 14 12 11 41 41 H 1.09001 * 109.47302 * 179.97438 * 14 12 11 42 42 H 1.09003 * 109.47088 * 65.00205 * 15 12 11 43 43 H 1.09000 * 109.47325 * 184.99840 * 15 12 11 44 44 H 1.00897 * 110.99761 * 303.95456 * 16 15 12 45 45 H 1.09003 * 109.47041 * 299.99891 * 17 16 15 46 46 H 1.08998 * 109.47283 * 60.00082 * 17 16 15 47 47 H 0.97001 * 120.00395 * 0.02562 * 20 18 17 48 48 H 0.97003 * 120.00056 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1837 2.1078 -1.0462 5 6 2.6320 3.2946 -0.7249 6 6 2.9438 4.4147 -1.6836 7 6 2.7646 3.3407 0.6648 8 6 2.3676 2.0927 1.1125 9 6 2.3245 1.6276 2.5081 10 8 2.0400 0.4711 2.7551 11 7 2.6002 2.4830 3.5124 12 6 2.4493 2.0517 4.9043 13 1 2.7273 1.0014 4.9912 14 6 0.9933 2.2315 5.3389 15 6 3.3572 2.8956 5.8011 16 7 4.7395 2.8177 5.3103 17 6 5.6418 3.6183 6.1488 18 6 7.0476 3.5136 5.6161 19 8 7.2755 2.8388 4.6344 20 7 8.0515 4.1706 6.2301 21 6 9.3303 4.0757 5.7452 22 1 9.5332 3.4748 4.8710 23 6 10.3656 4.7527 6.3784 24 7 10.1187 5.4834 7.4424 25 14 12.1081 4.6228 5.7182 26 1 12.1195 3.7452 4.5204 27 1 12.5983 5.9742 5.3458 28 1 12.9917 4.0464 6.7632 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0535 5.0262 -1.8300 35 1 3.7444 5.0309 -1.2744 36 1 3.2592 3.9973 -2.6398 37 1 3.1063 4.1727 1.2627 38 1 2.8948 3.3856 3.3135 39 1 0.7153 3.2818 5.2518 40 1 0.3465 1.6302 4.6999 41 1 0.8809 1.9102 6.3744 42 1 3.0231 3.9330 5.7828 43 1 3.3123 2.5174 6.8223 44 1 5.0506 1.8594 5.2566 45 1 5.3234 4.6607 6.1325 46 1 5.6128 3.2455 7.1726 47 1 7.8693 4.7106 7.0150 48 1 10.8414 5.9557 7.8848 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268664000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:07 Heat of formation + Delta-G solvation = -3.383022 kcal Electronic energy + Delta-G solvation = -28946.517280 eV Core-core repulsion = 24844.898120 eV Total energy + Delta-G solvation = -4101.619160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.64170 -39.66766 -38.31496 -36.73650 -35.07597 -34.28401 -33.68418 -31.98310 -31.41369 -31.21930 -30.07265 -27.64318 -27.59618 -25.12848 -24.19162 -23.33753 -22.91694 -21.61830 -20.67199 -19.64698 -19.21389 -17.94190 -17.78034 -16.75205 -16.45102 -16.08761 -15.69341 -15.14145 -14.95888 -14.80993 -14.58712 -14.41126 -14.15451 -13.99861 -13.78776 -13.52710 -13.37202 -13.28391 -13.02013 -12.66202 -12.61795 -12.51933 -12.42445 -12.18281 -12.06857 -11.85102 -11.59320 -11.51468 -11.48856 -11.07170 -11.01830 -10.75466 -10.35360 -10.23959 -10.07460 -9.53576 -9.32422 -9.02911 -8.94100 -8.50946 -8.13697 -7.97942 -6.43576 -3.84246 1.19493 2.24845 2.46674 3.10067 3.15309 3.17092 3.26161 3.33597 3.88537 4.01806 4.25132 4.31615 4.49169 4.71328 4.73208 4.77441 4.94071 5.01660 5.05385 5.06734 5.18593 5.24403 5.28457 5.37357 5.39985 5.46610 5.49757 5.52511 5.53021 5.54465 5.73764 5.74920 5.77435 5.82269 5.90996 5.92528 5.98025 6.22762 6.36025 6.44816 6.67853 7.10169 7.39331 7.53974 7.55353 7.97980 8.04753 8.09114 8.59301 9.16490 9.52415 10.03782 10.74204 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.002425 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.273657 B =11544.385285 C =12975.380771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.108 3.892 3 N -0.255 5.255 4 N -0.279 5.279 5 C 0.020 3.980 6 C -0.066 4.066 7 C -0.181 4.181 8 C -0.034 4.034 9 C 0.596 3.404 10 O -0.550 6.550 11 N -0.690 5.690 12 C 0.147 3.853 13 H 0.090 0.910 14 C -0.161 4.161 15 C 0.048 3.952 16 N -0.667 5.667 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.161 0.839 38 H 0.409 0.591 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.351 0.649 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.246 -3.443 -8.075 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.011 4.011 3 N -0.043 5.043 4 N -0.113 5.113 5 C -0.136 4.136 6 C -0.125 4.125 7 C -0.210 4.210 8 C -0.162 4.162 9 C 0.381 3.619 10 O -0.429 6.429 11 N -0.340 5.340 12 C 0.042 3.958 13 H 0.108 0.892 14 C -0.220 4.220 15 C -0.083 4.083 16 N -0.300 5.300 17 C -0.082 4.082 18 C 0.225 3.775 19 O -0.465 6.465 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.140 0.860 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.179 0.821 38 H 0.245 0.755 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.171 0.829 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.608 -4.931 -9.790 24.229 hybrid contribution 1.298 0.741 1.713 2.274 sum -20.309 -4.190 -8.076 22.254 Atomic orbital electron populations 1.22069 0.93689 1.03337 1.02880 1.22245 0.95979 0.76721 1.06178 1.45713 1.44555 1.12154 1.01857 1.73088 1.19691 1.04706 1.13775 1.21998 1.03830 0.93826 0.93916 1.20083 1.01966 0.93505 0.96928 1.22166 1.06887 0.96894 0.95063 1.21364 1.10989 0.93893 0.89944 1.16853 0.76822 0.85110 0.83070 1.90735 1.50192 1.17364 1.84564 1.45489 1.67102 1.16419 1.05004 1.21010 0.94763 1.00122 0.79947 0.89190 1.22154 0.95691 1.02361 1.01818 1.22314 0.89403 1.00541 0.96008 1.60058 0.99995 1.17522 1.52422 1.21680 0.92892 0.99148 0.94472 1.19802 0.85856 0.85087 0.86742 1.90541 1.83901 1.44180 1.27927 1.41869 1.06961 1.43390 1.27851 1.19749 0.82716 1.28096 1.12208 0.87892 1.25264 1.00364 0.96333 0.96018 1.69620 1.33732 1.31246 1.19738 0.85804 0.81611 0.78099 0.78877 1.19206 1.20717 1.20771 0.91911 0.91885 0.90171 0.88634 0.86005 0.91000 0.90326 0.91107 0.82117 0.75466 0.92120 0.91996 0.91331 0.90301 0.93658 0.82912 0.89539 0.93814 0.77485 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.11 1.13 6.70 -4.04 -0.03 1.10 16 3 N -0.26 -3.32 3.35 -57.14 -0.19 -3.51 16 4 N -0.28 -3.75 11.90 33.64 0.40 -3.35 16 5 C 0.02 0.25 7.22 -82.47 -0.60 -0.35 16 6 C -0.07 -0.58 10.45 36.00 0.38 -0.21 16 7 C -0.18 -2.19 10.44 -38.98 -0.41 -2.59 16 8 C -0.03 -0.45 6.96 -82.06 -0.57 -1.02 16 9 C 0.60 7.97 7.76 -12.64 -0.10 7.87 16 10 O -0.55 -8.31 14.22 5.25 0.07 -8.24 16 11 N -0.69 -7.82 4.79 -54.97 -0.26 -8.09 16 12 C 0.15 1.52 2.85 -67.93 -0.19 1.32 16 13 H 0.09 1.08 7.52 -51.93 -0.39 0.69 16 14 C -0.16 -1.35 9.48 37.16 0.35 -0.99 16 15 C 0.05 0.50 5.24 -3.83 -0.02 0.48 16 16 N -0.67 -9.83 5.85 -115.06 -0.67 -10.50 16 17 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 18 C 0.44 10.11 7.82 -10.99 -0.09 10.03 16 19 O -0.58 -15.61 15.78 5.55 0.09 -15.52 16 20 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 21 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 22 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 23 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 24 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 25 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.12 1.39 5.96 -51.93 -0.31 1.08 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.16 1.58 7.58 -52.48 -0.40 1.18 16 38 H 0.41 4.29 7.63 -40.82 -0.31 3.98 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.35 5.73 8.43 -39.29 -0.33 5.40 16 45 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 406.07 15.07 6.12 6.12 Total: -1.00 -33.78 406.07 -7.46 -41.24 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -7.49 Total: 16.07 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -1.16 Total: 7.52 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: -0.06 Total: -63.15 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: 0.16 Total: -23.76 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.78 -7.46 -41.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268664000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.852 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds