Wall clock time and date at job start Tue Mar 31 2020 20:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46508 * 109.47237 * 2 1 4 4 N 1.28441 * 125.18532 * 274.71451 * 3 2 1 5 5 C 1.30867 * 110.92359 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.06910 * 180.02562 * 5 4 3 7 7 C 1.39676 * 107.85947 * 359.77136 * 5 4 3 8 8 C 1.36594 * 125.18847 * 94.73155 * 3 2 1 9 9 C 1.47166 * 126.88873 * 359.94797 * 8 3 2 10 10 O 1.21633 * 119.99741 * 5.31629 * 9 8 3 11 11 N 1.34773 * 120.00348 * 185.31309 * 9 8 3 12 12 C 1.46498 * 120.00431 * 174.91125 * 11 9 8 13 13 H 1.09000 * 109.46455 * 35.27310 * 12 11 9 14 14 C 1.53005 * 109.47087 * 275.28009 * 12 11 9 15 15 C 1.52991 * 109.47489 * 155.27511 * 12 11 9 16 16 N 1.46894 * 109.47346 * 305.00337 * 15 12 11 17 17 C 1.46903 * 111.00118 * 179.97438 * 16 15 12 18 18 C 1.50703 * 109.47082 * 179.97438 * 17 16 15 19 19 O 1.21292 * 120.00014 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99911 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99803 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00156 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00246 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99515 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00257 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47365 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47063 * 120.00307 * 25 23 21 28 28 H 1.48497 * 109.47075 * 239.99965 * 25 23 21 29 29 H 1.09005 * 109.47153 * 299.99578 * 1 2 3 30 30 H 1.08996 * 109.47264 * 59.99829 * 1 2 3 31 31 H 1.08998 * 109.47067 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47355 * 240.00249 * 2 1 3 33 33 H 1.09003 * 109.47170 * 119.99800 * 2 1 3 34 34 H 1.09000 * 109.47711 * 89.97408 * 6 5 4 35 35 H 1.09002 * 109.47227 * 209.97201 * 6 5 4 36 36 H 1.08994 * 109.47340 * 329.96802 * 6 5 4 37 37 H 1.08006 * 127.32045 * 180.23742 * 7 5 4 38 38 H 0.97001 * 119.99627 * 355.19005 * 11 9 8 39 39 H 1.08999 * 109.46792 * 299.99569 * 14 12 11 40 40 H 1.09004 * 109.47211 * 59.99170 * 14 12 11 41 41 H 1.09001 * 109.47302 * 179.97438 * 14 12 11 42 42 H 1.09003 * 109.47088 * 65.00205 * 15 12 11 43 43 H 1.09000 * 109.47325 * 184.99840 * 15 12 11 44 44 H 1.00897 * 110.99761 * 303.95456 * 16 15 12 45 45 H 1.09003 * 109.47041 * 299.99891 * 17 16 15 46 46 H 1.08998 * 109.47283 * 60.00082 * 17 16 15 47 47 H 0.97001 * 120.00395 * 0.02562 * 20 18 17 48 48 H 0.97003 * 120.00056 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1837 2.1078 -1.0462 5 6 2.6320 3.2946 -0.7249 6 6 2.9438 4.4147 -1.6836 7 6 2.7646 3.3407 0.6648 8 6 2.3676 2.0927 1.1125 9 6 2.3245 1.6276 2.5081 10 8 2.0400 0.4711 2.7551 11 7 2.6002 2.4830 3.5124 12 6 2.4493 2.0517 4.9043 13 1 2.7273 1.0014 4.9912 14 6 0.9933 2.2315 5.3389 15 6 3.3572 2.8956 5.8011 16 7 4.7395 2.8177 5.3103 17 6 5.6418 3.6183 6.1488 18 6 7.0476 3.5136 5.6161 19 8 7.2755 2.8388 4.6344 20 7 8.0515 4.1706 6.2301 21 6 9.3303 4.0757 5.7452 22 1 9.5332 3.4748 4.8710 23 6 10.3656 4.7527 6.3784 24 7 10.1187 5.4834 7.4424 25 14 12.1081 4.6228 5.7182 26 1 12.1195 3.7452 4.5204 27 1 12.5983 5.9742 5.3458 28 1 12.9917 4.0464 6.7632 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0535 5.0262 -1.8300 35 1 3.7444 5.0309 -1.2744 36 1 3.2592 3.9973 -2.6398 37 1 3.1063 4.1727 1.2627 38 1 2.8948 3.3856 3.3135 39 1 0.7153 3.2818 5.2518 40 1 0.3465 1.6302 4.6999 41 1 0.8809 1.9102 6.3744 42 1 3.0231 3.9330 5.7828 43 1 3.3123 2.5174 6.8223 44 1 5.0506 1.8594 5.2566 45 1 5.3234 4.6607 6.1325 46 1 5.6128 3.2455 7.1726 47 1 7.8693 4.7106 7.0150 48 1 10.8414 5.9557 7.8848 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268664000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:06 Heat of formation + Delta-G solvation = -29.197666 kcal Electronic energy + Delta-G solvation = -28947.636687 eV Core-core repulsion = 24844.898120 eV Total energy + Delta-G solvation = -4102.738567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.57428 -40.67316 -40.08235 -37.82367 -36.10583 -35.84420 -35.07244 -33.26478 -32.90271 -32.19493 -30.99833 -28.94400 -28.37351 -26.71306 -25.24677 -24.48617 -23.83888 -22.51998 -21.61820 -21.03614 -20.52359 -19.88557 -18.75298 -17.90927 -17.60735 -17.26527 -16.90115 -16.47274 -16.27723 -16.07273 -15.76116 -15.62411 -15.39335 -15.10743 -14.99281 -14.61600 -14.56733 -14.10693 -14.04628 -13.83799 -13.56356 -13.41037 -13.27400 -13.14322 -13.07305 -12.98345 -12.93717 -12.79547 -12.71948 -12.39917 -12.30681 -12.12261 -11.85221 -11.68646 -11.50508 -11.09697 -10.36248 -10.28955 -9.99946 -9.95428 -9.83500 -9.32656 -8.46384 -5.94428 0.21548 1.36435 1.36943 1.42012 1.54368 1.55713 2.07771 2.14630 2.22120 2.29546 2.91216 3.21461 3.46204 3.50275 3.60564 3.82984 3.96188 3.98767 4.11625 4.18826 4.28928 4.33887 4.38554 4.42517 4.54740 4.61847 4.64211 4.67519 4.68668 4.74737 4.78437 4.80006 4.89050 5.01089 5.04753 5.07016 5.14805 5.28823 5.41884 5.47634 5.58472 5.78825 5.88525 6.10626 6.33104 6.44932 6.61656 7.03699 7.12502 7.14367 7.58525 8.14445 8.71150 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.002425 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.273657 B =11544.385285 C =12975.380771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.102 3.898 3 N -0.263 5.263 4 N -0.298 5.298 5 C 0.010 3.990 6 C -0.064 4.064 7 C -0.184 4.184 8 C -0.054 4.054 9 C 0.592 3.408 10 O -0.574 6.574 11 N -0.682 5.682 12 C 0.147 3.853 13 H 0.070 0.930 14 C -0.152 4.152 15 C 0.054 3.946 16 N -0.680 5.680 17 C 0.067 3.933 18 C 0.437 3.563 19 O -0.625 6.625 20 N -0.574 5.574 21 C -0.331 4.331 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.276 1.276 27 H -0.270 1.270 28 H -0.271 1.271 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.180 0.820 38 H 0.414 0.586 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.065 0.935 44 H 0.339 0.661 45 H 0.112 0.888 46 H 0.068 0.932 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.005 -2.242 -7.393 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 N -0.051 5.051 4 N -0.132 5.132 5 C -0.146 4.146 6 C -0.123 4.123 7 C -0.213 4.213 8 C -0.182 4.182 9 C 0.377 3.623 10 O -0.455 6.455 11 N -0.332 5.332 12 C 0.043 3.957 13 H 0.088 0.912 14 C -0.211 4.211 15 C -0.075 4.075 16 N -0.312 5.312 17 C -0.065 4.065 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.211 5.211 21 C -0.461 4.461 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.200 1.200 27 H -0.195 1.195 28 H -0.196 1.196 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.198 0.802 38 H 0.251 0.749 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.118 0.882 43 H 0.083 0.917 44 H 0.157 0.843 45 H 0.130 0.870 46 H 0.086 0.914 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.394 -3.697 -9.073 24.443 hybrid contribution 1.493 0.346 1.494 2.140 sum -20.901 -3.351 -7.579 22.484 Atomic orbital electron populations 1.22002 0.92227 1.04627 1.02053 1.22393 0.97190 0.75972 1.06129 1.45972 1.44605 1.12759 1.01744 1.73069 1.20508 1.05431 1.14222 1.22607 1.03129 0.94186 0.94677 1.20198 1.03114 0.92718 0.96239 1.22485 1.06389 0.97014 0.95381 1.21571 1.11867 0.94675 0.90089 1.16977 0.76744 0.85010 0.83521 1.90715 1.51552 1.18353 1.84930 1.45513 1.66219 1.16296 1.05158 1.21079 0.96216 0.99056 0.79388 0.91193 1.22075 0.93520 1.03083 1.02416 1.22396 0.86603 1.01882 0.96667 1.60061 1.01630 1.16540 1.52972 1.21543 0.88704 1.01066 0.95236 1.20990 0.87988 0.82987 0.85606 1.90513 1.85168 1.45589 1.29860 1.41933 1.06724 1.44186 1.28303 1.19653 0.84727 1.29291 1.12425 0.90630 1.25990 1.03559 0.95576 0.96085 1.69669 1.35000 1.31260 1.20113 0.84916 0.77262 0.78323 0.78124 1.20029 1.19515 1.19647 0.93298 0.91933 0.87831 0.87366 0.87272 0.89351 0.89180 0.90954 0.80228 0.74878 0.90656 0.93469 0.89562 0.88193 0.91662 0.84273 0.87036 0.91443 0.76897 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 10.24 71.98 0.74 -1.84 16 2 C 0.10 2.19 6.70 86.38 0.58 2.76 16 3 N -0.26 -6.96 3.35 -334.68 -1.12 -8.08 16 4 N -0.30 -8.03 11.90 -47.49 -0.57 -8.60 16 5 C 0.01 0.24 7.22 43.05 0.31 0.55 16 6 C -0.06 -1.05 10.45 71.23 0.74 -0.30 16 7 C -0.18 -4.35 10.44 22.66 0.24 -4.12 16 8 C -0.05 -1.44 6.96 40.79 0.28 -1.15 16 9 C 0.59 16.04 7.76 86.59 0.67 16.71 16 10 O -0.57 -17.93 14.22 -4.14 -0.06 -17.99 16 11 N -0.68 -14.98 4.79 -446.06 -2.14 -17.12 16 12 C 0.15 2.84 2.85 44.99 0.13 2.97 16 13 H 0.07 1.66 7.52 -2.39 -0.02 1.64 16 14 C -0.15 -2.22 9.48 71.98 0.68 -1.54 16 15 C 0.05 0.96 5.24 86.30 0.45 1.42 16 16 N -0.68 -18.93 5.85 -517.95 -3.03 -21.96 16 17 C 0.07 2.05 6.17 85.56 0.53 2.58 16 18 C 0.44 20.04 7.82 87.66 0.69 20.73 16 19 O -0.62 -34.22 15.78 -3.07 -0.05 -34.27 16 20 N -0.57 -28.73 5.29 -306.98 -1.62 -30.36 16 21 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 24 N -0.92 -48.93 13.05 21.67 0.28 -48.65 16 25 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 26 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.11 2.62 5.96 -2.39 -0.01 2.60 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.18 3.32 7.58 -2.91 -0.02 3.30 16 38 H 0.41 8.17 7.63 -92.71 -0.71 7.46 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.34 10.91 8.43 -89.70 -0.76 10.16 16 45 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 46 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.40 18.71 7.90 -92.71 -0.73 17.97 16 48 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -74.64 406.07 -0.15 -74.79 By element: Atomic # 1 Polarization: 47.86 SS G_CDS: -1.19 Total: 46.67 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 7.32 Total: 20.72 kcal Atomic # 7 Polarization: -126.56 SS G_CDS: -8.19 Total: -134.76 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -0.11 Total: -52.26 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -74.64 -0.15 -74.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268664000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.589 kcal (2) G-P(sol) polarization free energy of solvation -74.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds