Wall clock time and date at job start Tue Mar 31 2020 19:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.53005 * 109.46736 * 240.00462 * 2 1 3 5 5 N 1.46902 * 109.46590 * 184.99881 * 4 2 1 6 6 C 1.46898 * 111.00283 * 293.95038 * 5 4 2 7 7 C 1.46906 * 110.99573 * 169.99897 * 5 4 2 8 8 C 1.50706 * 109.46929 * 190.00042 * 7 5 4 9 9 O 1.21290 * 119.99857 * 359.97438 * 8 7 5 10 10 N 1.34768 * 119.99753 * 179.97438 * 8 7 5 11 11 C 1.37101 * 120.00038 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99491 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00069 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00225 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99807 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47135 * 90.00196 * 15 13 11 17 17 H 1.48497 * 109.46961 * 210.00097 * 15 13 11 18 18 H 1.48496 * 109.47067 * 329.99880 * 15 13 11 19 19 N 1.46499 * 109.46968 * 120.00396 * 2 1 3 20 20 C 1.34770 * 120.00144 * 274.99576 * 19 2 1 21 21 O 1.21286 * 120.00034 * 0.02562 * 20 19 2 22 22 C 1.50703 * 120.00224 * 180.02562 * 20 19 2 23 23 C 1.50696 * 109.46992 * 180.02562 * 22 20 19 24 24 C 1.39881 * 126.04089 * 269.69059 * 23 22 20 25 25 N 1.30837 * 108.20342 * 179.82013 * 24 23 22 26 26 N 1.40082 * 108.20325 * 0.43989 * 25 24 23 27 27 C 1.46507 * 126.03802 * 179.69646 * 26 25 24 28 28 C 1.34943 * 107.92890 * 359.71776 * 26 25 24 29 29 H 1.09006 * 109.46587 * 299.99622 * 1 2 3 30 30 H 1.08997 * 109.46857 * 59.99664 * 1 2 3 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47005 * 65.00188 * 4 2 1 33 33 H 1.09000 * 109.47130 * 304.99423 * 4 2 1 34 34 H 1.08997 * 109.47334 * 296.05250 * 6 5 4 35 35 H 1.09000 * 109.46674 * 56.05127 * 6 5 4 36 36 H 1.08995 * 109.47296 * 176.04950 * 6 5 4 37 37 H 1.08998 * 109.47121 * 309.99709 * 7 5 4 38 38 H 1.09000 * 109.47141 * 69.99907 * 7 5 4 39 39 H 0.97005 * 120.00524 * 0.02562 * 10 8 7 40 40 H 0.96994 * 120.00109 * 179.97438 * 14 13 11 41 41 H 0.96997 * 119.99986 * 95.00047 * 19 2 1 42 42 H 1.08997 * 109.47165 * 300.00173 * 22 20 19 43 43 H 1.08996 * 109.47166 * 60.00410 * 22 20 19 44 44 H 1.07996 * 125.89563 * 359.97438 * 24 23 22 45 45 H 1.09003 * 109.47251 * 270.02592 * 27 26 25 46 46 H 1.09003 * 109.46547 * 30.02491 * 27 26 25 47 47 H 1.09004 * 109.47411 * 150.02245 * 27 26 25 48 48 H 1.08008 * 126.13172 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5040 -0.8266 -1.1905 6 6 4.1311 0.4994 -1.2721 7 6 4.0107 -1.7143 -2.2457 8 6 5.4725 -1.9937 -2.0081 9 8 6.0367 -1.5013 -1.0540 10 7 6.1526 -2.7905 -2.8558 11 6 7.4825 -3.0443 -2.6400 12 1 7.9849 -2.6059 -1.7904 13 6 8.1839 -3.8655 -3.5143 14 7 7.5727 -4.3985 -4.5483 15 14 9.9962 -4.2107 -3.2206 16 1 10.1382 -5.4173 -2.3667 17 1 10.6731 -4.4426 -4.5218 18 1 10.6178 -3.0465 -2.5399 19 7 2.0184 -0.6907 1.1961 20 6 2.1472 -0.0185 2.3571 21 8 1.8584 1.1582 2.4118 22 6 2.6500 -0.7288 3.5874 23 6 2.7000 0.2393 4.7412 24 6 3.7916 1.0375 5.0990 25 7 3.4546 1.7450 6.1467 26 7 2.1395 1.4115 6.4953 27 6 1.3769 1.9688 7.6153 28 6 1.6991 0.4858 5.6177 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -0.1582 -2.1370 33 1 1.6054 -1.7198 -1.2953 34 1 3.9101 0.9468 -2.2411 35 1 3.7381 1.1364 -0.4797 36 1 5.2101 0.3988 -1.1559 37 1 3.4545 -2.6515 -2.2301 38 1 3.8857 -1.2336 -3.2160 39 1 5.7015 -3.1840 -3.6191 40 1 8.0624 -4.9715 -5.1588 41 1 2.2490 -1.6318 1.1525 42 1 1.9778 -1.5511 3.8324 43 1 3.6493 -1.1206 3.3978 44 1 4.7466 1.0668 4.5956 45 1 1.5398 1.3598 8.5046 46 1 1.7080 2.9893 7.8081 47 1 0.3156 1.9720 7.3665 48 1 0.7227 0.0239 5.6155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268726135.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:42 Heat of formation + Delta-G solvation = 15.274186 kcal Electronic energy + Delta-G solvation = -28909.927748 eV Core-core repulsion = 24809.117625 eV Total energy + Delta-G solvation = -4100.810123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.30037 -39.63075 -38.54273 -36.92780 -34.63532 -33.75659 -33.72110 -32.06257 -31.24053 -30.77303 -28.32896 -27.98294 -26.88085 -25.89354 -24.78689 -22.76302 -21.34453 -21.18728 -20.28831 -19.93775 -19.13964 -17.83617 -17.12919 -16.92488 -16.18736 -15.92851 -15.46266 -15.35014 -14.92632 -14.77073 -14.62230 -14.47691 -13.99791 -13.74445 -13.64930 -13.42614 -13.35304 -13.14001 -12.88341 -12.72688 -12.57156 -12.45545 -12.09424 -12.00715 -11.78932 -11.72594 -11.48612 -11.34251 -11.22475 -10.91148 -10.66968 -10.65623 -10.39229 -10.21469 -9.70171 -9.47792 -9.47160 -8.87865 -8.47171 -8.42533 -7.97577 -7.84973 -6.41509 -3.82148 1.80450 2.41386 2.68718 2.87332 3.18029 3.26799 3.32565 3.47848 3.91065 3.97826 4.24943 4.34702 4.67808 4.78431 4.86400 4.94746 5.02071 5.04818 5.11151 5.12250 5.21491 5.24556 5.29458 5.32753 5.45473 5.53953 5.61824 5.67641 5.70601 5.73086 5.76339 5.95464 5.99663 6.01267 6.03461 6.11466 6.28591 6.57787 6.60887 6.67275 6.89345 7.26016 7.37404 7.55562 7.62297 7.74559 8.06962 8.46705 8.62364 9.18804 9.55132 10.07088 10.76229 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013448 B = 0.002291 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.602779 B =12221.120726 C =13832.843971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.148 3.852 3 H 0.086 0.914 4 C 0.042 3.958 5 N -0.513 5.513 6 C 0.021 3.979 7 C 0.045 3.955 8 C 0.444 3.556 9 O -0.576 6.576 10 N -0.565 5.565 11 C -0.297 4.297 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.929 3.071 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 N -0.708 5.708 20 C 0.516 3.484 21 O -0.545 6.545 22 C -0.062 4.062 23 C -0.213 4.213 24 C 0.066 3.934 25 N -0.301 5.301 26 N -0.380 5.380 27 C 0.104 3.896 28 C 0.064 3.936 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.013 0.987 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.391 0.609 40 H 0.271 0.729 41 H 0.404 0.596 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.183 0.817 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.907 5.833 14.388 23.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.104 0.896 4 C -0.087 4.087 5 N -0.237 5.237 6 C -0.127 4.127 7 C -0.086 4.086 8 C 0.230 3.770 9 O -0.460 6.460 10 N -0.202 5.202 11 C -0.427 4.427 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.756 3.244 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.194 1.194 19 N -0.360 5.360 20 C 0.302 3.698 21 O -0.422 6.422 22 C -0.103 4.103 23 C -0.225 4.225 24 C -0.120 4.120 25 N -0.122 5.122 26 N -0.162 5.162 27 C -0.037 4.037 28 C -0.082 4.082 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.032 0.968 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.224 0.776 40 H 0.081 0.919 41 H 0.239 0.761 42 H 0.113 0.887 43 H 0.123 0.877 44 H 0.200 0.800 45 H 0.091 0.909 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.233 7.640 16.352 24.955 hybrid contribution 0.158 -1.237 -1.983 2.343 sum -17.075 6.402 14.369 23.217 Atomic orbital electron populations 1.22144 0.95392 1.02031 1.02366 1.20889 0.93042 0.97653 0.84186 0.89633 1.22496 0.89283 1.00797 0.96099 1.61580 1.03088 1.12218 1.46815 1.22567 1.03123 0.88542 0.98442 1.21890 0.96374 0.97534 0.92849 1.19727 0.87676 0.84123 0.85500 1.90488 1.69972 1.54180 1.31334 1.41872 1.10386 1.42892 1.25058 1.19686 0.84941 1.27058 1.10998 0.87931 1.25254 1.00465 0.96773 0.95510 1.69609 1.37420 1.32966 1.14400 0.85867 0.82022 0.78942 0.77522 1.20409 1.20995 1.19438 1.45815 1.66943 1.14344 1.08848 1.20644 0.77267 0.87364 0.84520 1.90675 1.50201 1.16089 1.85237 1.19902 1.03963 0.96603 0.89862 1.19440 0.94994 1.06798 1.01300 1.23795 0.99820 0.94203 0.94223 1.77342 0.93427 1.23623 1.17809 1.48364 1.11120 1.32386 1.24375 1.21801 0.94904 1.00396 0.86643 1.22180 0.99639 0.94225 0.92144 0.92036 0.91898 0.92412 0.93755 0.90333 0.96812 0.92104 0.88557 0.89476 0.93550 0.77550 0.91919 0.76097 0.88714 0.87655 0.80040 0.90946 0.89433 0.89692 0.81343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 2 C 0.15 1.69 2.36 -67.92 -0.16 1.53 16 3 H 0.09 1.18 6.15 -51.93 -0.32 0.86 16 4 C 0.04 0.49 4.52 -3.82 -0.02 0.47 16 5 N -0.51 -7.90 4.22 -244.37 -1.03 -8.93 16 6 C 0.02 0.35 9.01 60.06 0.54 0.89 16 7 C 0.04 0.75 5.45 -4.97 -0.03 0.73 16 8 C 0.44 10.09 7.51 -10.99 -0.08 10.01 16 9 O -0.58 -14.95 13.88 5.55 0.08 -14.87 16 10 N -0.57 -13.96 5.29 -10.96 -0.06 -14.01 16 11 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 12 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 14 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 15 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 N -0.71 -8.07 4.80 -53.80 -0.26 -8.33 16 20 C 0.52 6.59 7.79 -10.99 -0.09 6.51 16 21 O -0.54 -9.03 15.70 5.55 0.09 -8.94 16 22 C -0.06 -0.63 6.19 -29.04 -0.18 -0.81 16 23 C -0.21 -2.51 4.59 -105.05 -0.48 -2.99 16 24 C 0.07 0.86 11.96 -17.36 -0.21 0.66 16 25 N -0.30 -4.14 12.58 30.63 0.39 -3.75 16 26 N -0.38 -4.17 4.01 -68.15 -0.27 -4.44 16 27 C 0.10 0.65 11.47 59.85 0.69 1.33 16 28 C 0.06 0.66 11.40 -17.22 -0.20 0.47 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 34 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.06 0.96 6.40 -51.93 -0.33 0.63 16 36 H 0.10 1.93 5.88 -51.93 -0.31 1.63 16 37 H 0.09 1.29 7.93 -51.93 -0.41 0.88 16 38 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 39 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.40 4.13 8.60 -40.82 -0.35 3.78 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 403.21 15.07 6.08 6.08 Total: -1.00 -35.55 403.21 -6.85 -42.40 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -7.46 Total: 12.67 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -0.10 Total: 9.81 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -0.51 Total: -63.00 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.16 Total: -23.82 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.55 -6.85 -42.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268726135.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.679 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds