Wall clock time and date at job start Tue Mar 31 2020 19:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.53005 * 109.46736 * 240.00462 * 2 1 3 5 5 N 1.46902 * 109.46590 * 184.99881 * 4 2 1 6 6 C 1.46898 * 111.00283 * 293.95038 * 5 4 2 7 7 C 1.46906 * 110.99573 * 169.99897 * 5 4 2 8 8 C 1.50706 * 109.46929 * 190.00042 * 7 5 4 9 9 O 1.21290 * 119.99857 * 359.97438 * 8 7 5 10 10 N 1.34768 * 119.99753 * 179.97438 * 8 7 5 11 11 C 1.37101 * 120.00038 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99491 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00069 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00225 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99807 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47135 * 90.00196 * 15 13 11 17 17 H 1.48497 * 109.46961 * 210.00097 * 15 13 11 18 18 H 1.48496 * 109.47067 * 329.99880 * 15 13 11 19 19 N 1.46499 * 109.46968 * 120.00396 * 2 1 3 20 20 C 1.34770 * 120.00144 * 274.99576 * 19 2 1 21 21 O 1.21286 * 120.00034 * 0.02562 * 20 19 2 22 22 C 1.50703 * 120.00224 * 180.02562 * 20 19 2 23 23 C 1.50696 * 109.46992 * 180.02562 * 22 20 19 24 24 C 1.39881 * 126.04089 * 269.69059 * 23 22 20 25 25 N 1.30837 * 108.20342 * 179.82013 * 24 23 22 26 26 N 1.40082 * 108.20325 * 0.43989 * 25 24 23 27 27 C 1.46507 * 126.03802 * 179.69646 * 26 25 24 28 28 C 1.34943 * 107.92890 * 359.71776 * 26 25 24 29 29 H 1.09006 * 109.46587 * 299.99622 * 1 2 3 30 30 H 1.08997 * 109.46857 * 59.99664 * 1 2 3 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47005 * 65.00188 * 4 2 1 33 33 H 1.09000 * 109.47130 * 304.99423 * 4 2 1 34 34 H 1.08997 * 109.47334 * 296.05250 * 6 5 4 35 35 H 1.09000 * 109.46674 * 56.05127 * 6 5 4 36 36 H 1.08995 * 109.47296 * 176.04950 * 6 5 4 37 37 H 1.08998 * 109.47121 * 309.99709 * 7 5 4 38 38 H 1.09000 * 109.47141 * 69.99907 * 7 5 4 39 39 H 0.97005 * 120.00524 * 0.02562 * 10 8 7 40 40 H 0.96994 * 120.00109 * 179.97438 * 14 13 11 41 41 H 0.96997 * 119.99986 * 95.00047 * 19 2 1 42 42 H 1.08997 * 109.47165 * 300.00173 * 22 20 19 43 43 H 1.08996 * 109.47166 * 60.00410 * 22 20 19 44 44 H 1.07996 * 125.89563 * 359.97438 * 24 23 22 45 45 H 1.09003 * 109.47251 * 270.02592 * 27 26 25 46 46 H 1.09003 * 109.46547 * 30.02491 * 27 26 25 47 47 H 1.09004 * 109.47411 * 150.02245 * 27 26 25 48 48 H 1.08008 * 126.13172 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5040 -0.8266 -1.1905 6 6 4.1311 0.4994 -1.2721 7 6 4.0107 -1.7143 -2.2457 8 6 5.4725 -1.9937 -2.0081 9 8 6.0367 -1.5013 -1.0540 10 7 6.1526 -2.7905 -2.8558 11 6 7.4825 -3.0443 -2.6400 12 1 7.9849 -2.6059 -1.7904 13 6 8.1839 -3.8655 -3.5143 14 7 7.5727 -4.3985 -4.5483 15 14 9.9962 -4.2107 -3.2206 16 1 10.1382 -5.4173 -2.3667 17 1 10.6731 -4.4426 -4.5218 18 1 10.6178 -3.0465 -2.5399 19 7 2.0184 -0.6907 1.1961 20 6 2.1472 -0.0185 2.3571 21 8 1.8584 1.1582 2.4118 22 6 2.6500 -0.7288 3.5874 23 6 2.7000 0.2393 4.7412 24 6 3.7916 1.0375 5.0990 25 7 3.4546 1.7450 6.1467 26 7 2.1395 1.4115 6.4953 27 6 1.3769 1.9688 7.6153 28 6 1.6991 0.4858 5.6177 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -0.1582 -2.1370 33 1 1.6054 -1.7198 -1.2953 34 1 3.9101 0.9468 -2.2411 35 1 3.7381 1.1364 -0.4797 36 1 5.2101 0.3988 -1.1559 37 1 3.4545 -2.6515 -2.2301 38 1 3.8857 -1.2336 -3.2160 39 1 5.7015 -3.1840 -3.6191 40 1 8.0624 -4.9715 -5.1588 41 1 2.2490 -1.6318 1.1525 42 1 1.9778 -1.5511 3.8324 43 1 3.6493 -1.1206 3.3978 44 1 4.7466 1.0668 4.5956 45 1 1.5398 1.3598 8.5046 46 1 1.7080 2.9893 7.8081 47 1 0.3156 1.9720 7.3665 48 1 0.7227 0.0239 5.6155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268726135.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:41 Heat of formation + Delta-G solvation = -12.324504 kcal Electronic energy + Delta-G solvation = -28911.124517 eV Core-core repulsion = 24809.117625 eV Total energy + Delta-G solvation = -4102.006892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13715 -40.69936 -40.13640 -38.23221 -36.04933 -35.41912 -34.50209 -33.22663 -32.93776 -31.68422 -29.45423 -29.04579 -27.96489 -26.72442 -26.53234 -23.99422 -22.34078 -22.00663 -21.23860 -20.91104 -20.82599 -19.80354 -18.13575 -17.76529 -17.63344 -16.95184 -16.62327 -16.51726 -16.20460 -16.09290 -15.94831 -15.57688 -15.29677 -15.09867 -15.01446 -14.55422 -14.23887 -14.08252 -13.91518 -13.61806 -13.48947 -13.40211 -13.28712 -13.16860 -13.07195 -12.85567 -12.69179 -12.63416 -12.56830 -12.40161 -12.35522 -12.11345 -11.65189 -11.52313 -11.41586 -10.74301 -10.32698 -10.22207 -9.94781 -9.83163 -9.28563 -9.16405 -8.42794 -5.90351 0.98783 1.39728 1.43472 1.55482 1.71283 1.79102 1.90772 2.12353 2.30745 2.57898 2.82561 3.24729 3.48125 3.66973 3.84736 4.01534 4.14995 4.20176 4.26345 4.32152 4.36464 4.41051 4.45192 4.49672 4.55077 4.57517 4.60691 4.63562 4.68744 4.74513 4.83338 4.85468 4.90110 4.92312 5.11852 5.21701 5.21888 5.34409 5.45207 5.68994 5.74131 5.91864 6.09683 6.19930 6.23291 6.66251 6.74687 6.83433 7.18559 7.52965 7.63218 8.19723 8.74514 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013448 B = 0.002291 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.602779 B =12221.120726 C =13832.843971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.148 3.852 3 H 0.057 0.943 4 C 0.047 3.953 5 N -0.525 5.525 6 C 0.032 3.968 7 C 0.058 3.942 8 C 0.442 3.558 9 O -0.613 6.613 10 N -0.576 5.576 11 C -0.327 4.327 12 H 0.077 0.923 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.989 3.011 16 H -0.271 1.271 17 H -0.273 1.273 18 H -0.275 1.275 19 N -0.702 5.702 20 C 0.513 3.487 21 O -0.588 6.588 22 C -0.054 4.054 23 C -0.235 4.235 24 C 0.042 3.958 25 N -0.340 5.340 26 N -0.382 5.382 27 C 0.094 3.906 28 C 0.070 3.930 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.027 0.973 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.118 0.882 38 H 0.065 0.935 39 H 0.396 0.604 40 H 0.276 0.724 41 H 0.412 0.588 42 H 0.129 0.871 43 H 0.105 0.895 44 H 0.180 0.820 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.113 0.887 48 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.237 4.443 14.212 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.075 0.925 4 C -0.081 4.081 5 N -0.249 5.249 6 C -0.117 4.117 7 C -0.073 4.073 8 C 0.230 3.770 9 O -0.499 6.499 10 N -0.214 5.214 11 C -0.457 4.457 12 H 0.095 0.905 13 C -0.213 4.213 14 N -0.562 5.562 15 Si 0.813 3.187 16 H -0.196 1.196 17 H -0.198 1.198 18 H -0.200 1.200 19 N -0.353 5.353 20 C 0.301 3.699 21 O -0.469 6.469 22 C -0.095 4.095 23 C -0.247 4.247 24 C -0.143 4.143 25 N -0.162 5.162 26 N -0.165 5.165 27 C -0.046 4.046 28 C -0.077 4.077 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.123 0.877 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.229 0.771 40 H 0.085 0.915 41 H 0.248 0.752 42 H 0.147 0.853 43 H 0.123 0.877 44 H 0.197 0.803 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.132 0.868 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -19.586 6.228 16.162 26.146 hybrid contribution 0.803 -0.738 -1.868 2.163 sum -18.783 5.489 14.294 24.233 Atomic orbital electron populations 1.22042 0.93340 1.03231 1.02265 1.20887 0.94513 0.96138 0.84210 0.92493 1.22580 0.86316 1.02602 0.96558 1.61499 1.05529 1.11265 1.46615 1.22331 1.00575 0.89557 0.99204 1.21774 0.92106 0.99468 0.93971 1.20829 0.89994 0.82142 0.84048 1.90478 1.71597 1.55017 1.32765 1.41935 1.09821 1.43863 1.25813 1.19607 0.86609 1.28397 1.11102 0.90478 1.25970 1.04153 0.96146 0.95077 1.69663 1.38755 1.33079 1.14702 0.84982 0.77336 0.78562 0.77798 1.19613 1.19770 1.20034 1.45825 1.66273 1.14626 1.08583 1.21102 0.76500 0.86891 0.85435 1.90654 1.52289 1.17982 1.85949 1.19911 1.04595 0.96848 0.88151 1.19710 0.95064 1.07506 1.02404 1.23983 1.00638 0.95013 0.94676 1.77244 0.95505 1.24826 1.18645 1.48767 1.10382 1.32193 1.25118 1.22176 0.95906 1.00437 0.86098 1.22773 1.00539 0.93335 0.91014 0.93589 0.90584 0.90473 0.92204 0.87693 0.95494 0.92023 0.92721 0.86376 0.91740 0.77055 0.91451 0.75182 0.85264 0.87713 0.80269 0.89192 0.89687 0.86830 0.77683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.48 71.98 0.68 -1.74 16 2 C 0.15 3.12 2.36 45.00 0.11 3.22 16 3 H 0.06 1.55 6.15 -2.39 -0.01 1.54 16 4 C 0.05 0.94 4.52 86.30 0.39 1.33 16 5 N -0.52 -15.27 4.22 -927.04 -3.92 -19.18 16 6 C 0.03 1.04 9.01 127.69 1.15 2.19 16 7 C 0.06 1.82 5.45 85.56 0.47 2.28 16 8 C 0.44 20.11 7.51 87.66 0.66 20.77 16 9 O -0.61 -32.69 13.88 -3.06 -0.04 -32.73 16 10 N -0.58 -28.67 5.29 -306.99 -1.62 -30.30 16 11 C -0.33 -18.29 9.68 84.04 0.81 -17.47 16 12 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 13 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 14 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 15 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 18 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 19 N -0.70 -14.96 4.80 -442.52 -2.12 -17.08 16 20 C 0.51 12.83 7.79 87.66 0.68 13.51 16 21 O -0.59 -19.74 15.70 -3.05 -0.05 -19.79 16 22 C -0.05 -1.04 6.19 29.10 0.18 -0.86 16 23 C -0.24 -5.47 4.59 -20.14 -0.09 -5.56 16 24 C 0.04 1.16 11.96 85.24 1.02 2.18 16 25 N -0.34 -9.66 12.58 -57.02 -0.72 -10.37 16 26 N -0.38 -8.09 4.01 -369.53 -1.48 -9.58 16 27 C 0.09 1.02 11.47 127.77 1.47 2.48 16 28 C 0.07 1.35 11.40 83.54 0.95 2.30 16 29 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 33 H 0.10 1.60 7.93 -2.39 -0.02 1.58 16 34 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 1.99 6.40 -2.39 -0.02 1.97 16 36 H 0.05 2.27 5.88 -2.39 -0.01 2.26 16 37 H 0.12 3.05 7.93 -2.39 -0.02 3.03 16 38 H 0.06 1.85 8.12 -2.39 -0.02 1.83 16 39 H 0.40 18.64 7.90 -92.70 -0.73 17.91 16 40 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 41 H 0.41 7.50 8.60 -92.71 -0.80 6.70 16 42 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.18 4.60 8.06 -2.91 -0.02 4.58 16 45 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.21 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -80.38 403.21 0.76 -79.62 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -0.54 Total: 39.00 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 8.94 Total: 24.35 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -9.58 Total: -135.26 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: -0.09 Total: -52.52 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -80.38 0.76 -79.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268726135.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.295 kcal (2) G-P(sol) polarization free energy of solvation -80.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds