Wall clock time and date at job start Tue Mar 31 2020 19:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47014 * 2 1 4 4 C 1.53004 * 109.46824 * 119.99950 * 2 1 3 5 5 N 1.46898 * 109.46619 * 175.00030 * 4 2 1 6 6 C 1.46901 * 111.00443 * 66.04574 * 5 4 2 7 7 C 1.46906 * 110.99820 * 189.99887 * 5 4 2 8 8 C 1.50696 * 109.47351 * 169.99890 * 7 5 4 9 9 O 1.21297 * 120.00140 * 0.02562 * 8 7 5 10 10 N 1.34775 * 120.00393 * 180.02562 * 8 7 5 11 11 C 1.37096 * 120.00184 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00243 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99747 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00149 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99786 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47265 * 59.99782 * 15 13 11 17 17 H 1.48503 * 109.47225 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47079 * 299.99726 * 15 13 11 19 19 N 1.46498 * 109.46856 * 239.99647 * 2 1 3 20 20 C 1.34779 * 119.99858 * 85.00184 * 19 2 1 21 21 O 1.21283 * 119.99988 * 0.02562 * 20 19 2 22 22 C 1.50697 * 119.99862 * 179.97438 * 20 19 2 23 23 C 1.50697 * 109.46993 * 180.02562 * 22 20 19 24 24 C 1.39870 * 126.04008 * 269.69135 * 23 22 20 25 25 N 1.30842 * 108.20392 * 179.81855 * 24 23 22 26 26 N 1.40088 * 108.20236 * 0.43903 * 25 24 23 27 27 C 1.46500 * 126.03638 * 179.69940 * 26 25 24 28 28 C 1.34943 * 107.92455 * 359.71989 * 26 25 24 29 29 H 1.09004 * 109.47084 * 300.00498 * 1 2 3 30 30 H 1.09001 * 109.47418 * 59.99879 * 1 2 3 31 31 H 1.08999 * 109.47517 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47270 * 54.99895 * 4 2 1 33 33 H 1.08999 * 109.47017 * 294.99773 * 4 2 1 34 34 H 1.09002 * 109.47401 * 183.95136 * 6 5 4 35 35 H 1.09001 * 109.46874 * 63.95149 * 6 5 4 36 36 H 1.09004 * 109.46970 * 303.95282 * 6 5 4 37 37 H 1.08997 * 109.46995 * 289.99871 * 7 5 4 38 38 H 1.09001 * 109.46848 * 49.99877 * 7 5 4 39 39 H 0.96996 * 119.99654 * 0.02562 * 10 8 7 40 40 H 0.97004 * 119.99438 * 179.97438 * 14 13 11 41 41 H 0.97001 * 120.00166 * 265.00059 * 19 2 1 42 42 H 1.09008 * 109.47489 * 299.99972 * 22 20 19 43 43 H 1.08999 * 109.47461 * 60.00441 * 22 20 19 44 44 H 1.07996 * 125.89856 * 359.97438 * 24 23 22 45 45 H 1.09001 * 109.46926 * 270.02441 * 27 26 25 46 46 H 1.08999 * 109.46886 * 30.02434 * 27 26 25 47 47 H 1.09001 * 109.47023 * 150.02315 * 27 26 25 48 48 H 1.08010 * 126.12562 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5040 -0.8267 1.1904 6 6 4.1310 0.4993 1.2720 7 6 4.0107 -1.7144 2.2455 8 6 5.4723 -1.9938 2.0080 9 8 6.0367 -1.5014 1.0538 10 7 6.1526 -2.7907 2.8556 11 6 7.4822 -3.0453 2.6391 12 1 7.9845 -2.6076 1.7891 13 6 8.1834 -3.8674 3.5128 14 7 7.5722 -4.4004 4.5468 15 14 9.9953 -4.2137 3.2182 16 1 10.7533 -2.9369 3.2406 17 1 10.5071 -5.1126 4.2838 18 1 10.1657 -4.8675 1.8958 19 7 2.0183 -0.6907 -1.1961 20 6 2.1470 -0.0184 -2.3571 21 8 1.8590 1.1585 -2.4115 22 6 2.6498 -0.7287 -3.5874 23 6 2.7010 0.2397 -4.7409 24 6 1.6689 0.4910 -5.6508 25 7 2.0854 1.3926 -6.5026 26 7 3.4013 1.7366 -6.1672 27 6 4.2441 2.7074 -6.8696 28 6 3.7556 1.0155 -5.0830 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6053 -1.7197 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 5.2101 0.3987 1.1557 35 1 3.9101 0.9467 2.2411 36 1 3.7380 1.1364 0.4796 37 1 3.8857 -1.2337 3.2158 38 1 3.4544 -2.6516 2.2300 39 1 5.7013 -3.1847 3.6184 40 1 8.0617 -4.9746 5.1565 41 1 2.2489 -1.6319 -1.1525 42 1 3.6492 -1.1206 -3.3979 43 1 1.9776 -1.5509 -3.8325 44 1 0.6953 0.0236 -5.6490 45 1 4.8041 2.2008 -7.6556 46 1 3.6162 3.4809 -7.3117 47 1 4.9391 3.1629 -6.1641 48 1 4.7101 1.0510 -4.5787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268726136.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:43 Heat of formation + Delta-G solvation = -12.196272 kcal Electronic energy + Delta-G solvation = -28955.103668 eV Core-core repulsion = 24853.102336 eV Total energy + Delta-G solvation = -4102.001332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.14007 -40.69974 -40.13435 -38.23178 -36.04755 -35.41672 -34.50859 -33.22431 -32.93365 -31.68089 -29.45194 -29.07094 -27.96396 -26.72629 -26.53584 -23.99387 -22.34138 -22.00795 -21.24277 -20.90853 -20.83076 -19.80048 -18.13747 -17.75149 -17.63401 -16.99214 -16.62074 -16.51419 -16.21416 -16.09618 -15.90960 -15.57442 -15.30346 -15.05650 -15.00424 -14.65940 -14.23809 -14.06757 -13.88373 -13.61295 -13.50975 -13.42942 -13.31661 -13.12395 -13.03483 -12.85224 -12.77064 -12.62447 -12.54914 -12.41365 -12.34994 -12.11123 -11.66099 -11.53612 -11.40868 -10.74487 -10.33418 -10.21911 -9.94864 -9.83352 -9.29373 -9.16445 -8.42436 -5.90147 0.96984 1.41758 1.43672 1.53845 1.69695 1.79900 1.90750 2.12490 2.30803 2.57603 2.82438 3.25144 3.48448 3.66788 3.84645 4.00437 4.12573 4.21110 4.26432 4.31745 4.37551 4.40996 4.43093 4.46982 4.56110 4.57611 4.60696 4.63553 4.65985 4.74676 4.82533 4.85357 4.88737 4.91752 5.11426 5.21535 5.22723 5.34253 5.45077 5.72628 5.74434 5.91890 6.09846 6.14514 6.23026 6.66377 6.74848 6.83223 7.18493 7.52752 7.63334 8.19541 8.74686 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011865 B = 0.002398 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.337328 B =11673.373521 C =13450.640692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.149 3.851 3 H 0.058 0.942 4 C 0.047 3.953 5 N -0.524 5.524 6 C 0.032 3.968 7 C 0.057 3.943 8 C 0.443 3.557 9 O -0.612 6.612 10 N -0.577 5.577 11 C -0.328 4.328 12 H 0.078 0.922 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.989 3.011 16 H -0.274 1.274 17 H -0.273 1.273 18 H -0.271 1.271 19 N -0.702 5.702 20 C 0.513 3.487 21 O -0.588 6.588 22 C -0.055 4.055 23 C -0.232 4.232 24 C 0.052 3.948 25 N -0.337 5.337 26 N -0.383 5.383 27 C 0.094 3.906 28 C 0.059 3.941 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.026 0.974 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.117 0.883 39 H 0.395 0.605 40 H 0.276 0.724 41 H 0.412 0.588 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.198 0.802 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.105 0.895 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.450 6.195 -12.478 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.043 3.957 3 H 0.077 0.923 4 C -0.080 4.080 5 N -0.249 5.249 6 C -0.117 4.117 7 C -0.074 4.074 8 C 0.230 3.770 9 O -0.498 6.498 10 N -0.215 5.215 11 C -0.458 4.458 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.563 5.563 15 Si 0.813 3.187 16 H -0.199 1.199 17 H -0.197 1.197 18 H -0.197 1.197 19 N -0.353 5.353 20 C 0.301 3.699 21 O -0.469 6.469 22 C -0.095 4.095 23 C -0.244 4.244 24 C -0.134 4.134 25 N -0.159 5.159 26 N -0.166 5.166 27 C -0.046 4.046 28 C -0.088 4.088 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.135 0.865 39 H 0.229 0.771 40 H 0.086 0.914 41 H 0.248 0.752 42 H 0.127 0.873 43 H 0.144 0.856 44 H 0.215 0.785 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.123 0.877 48 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -13.275 7.852 -14.550 21.203 hybrid contribution 1.011 -0.691 1.943 2.297 sum -12.264 7.162 -12.607 18.990 Atomic orbital electron populations 1.22051 0.93541 1.03193 1.02230 1.20875 0.94378 0.96196 0.84216 0.92338 1.22570 0.86382 1.02562 0.96522 1.61500 1.05459 1.11314 1.46580 1.22338 1.00599 0.89503 0.99211 1.21774 0.92161 0.99457 0.93983 1.20804 0.89941 0.82161 0.84046 1.90470 1.71571 1.55047 1.32722 1.41937 1.09845 1.43834 1.25836 1.19580 0.86626 1.28443 1.11141 0.90364 1.25976 1.04159 0.96117 0.95074 1.69663 1.38831 1.33021 1.14743 0.85048 0.77346 0.78225 0.78088 1.19940 1.19729 1.19652 1.45828 1.66273 1.14635 1.08583 1.21096 0.76543 0.86898 0.85373 1.90655 1.52276 1.18033 1.85901 1.19918 1.04662 0.96867 0.88087 1.19704 0.95015 1.07309 1.02382 1.24076 1.00459 0.95839 0.92978 1.77219 0.93762 1.19159 1.25736 1.48712 1.10713 1.33503 1.23626 1.22142 0.93540 0.90720 0.98223 1.22715 1.01353 0.94165 0.90557 0.90539 0.93730 0.90552 0.87791 0.92201 0.92608 0.95570 0.91941 0.91767 0.86470 0.77084 0.91449 0.75174 0.87336 0.85591 0.78523 0.89257 0.89185 0.87654 0.79434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.48 71.98 0.68 -1.86 16 2 C 0.15 3.13 2.36 44.99 0.11 3.24 16 3 H 0.06 1.57 6.15 -2.39 -0.01 1.56 16 4 C 0.05 0.93 4.52 86.30 0.39 1.32 16 5 N -0.52 -14.92 4.22 -927.04 -3.92 -18.84 16 6 C 0.03 1.01 9.01 127.69 1.15 2.16 16 7 C 0.06 1.77 5.45 85.55 0.47 2.24 16 8 C 0.44 19.80 7.51 87.66 0.66 20.46 16 9 O -0.61 -31.96 13.88 -3.08 -0.04 -32.00 16 10 N -0.58 -28.34 5.29 -306.99 -1.62 -29.97 16 11 C -0.33 -18.08 9.68 84.04 0.81 -17.27 16 12 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 13 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 14 N -0.92 -48.71 13.05 21.66 0.28 -48.43 16 15 Si 0.99 42.14 29.55 68.60 2.03 44.16 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 N -0.70 -14.94 4.80 -442.53 -2.12 -17.07 16 20 C 0.51 12.80 7.79 87.66 0.68 13.49 16 21 O -0.59 -19.70 15.70 -3.04 -0.05 -19.75 16 22 C -0.05 -1.05 6.18 29.10 0.18 -0.87 16 23 C -0.23 -5.39 4.59 -20.14 -0.09 -5.48 16 24 C 0.05 1.24 11.96 85.24 1.02 2.25 16 25 N -0.34 -8.98 12.58 -57.02 -0.72 -9.70 16 26 N -0.38 -8.71 4.01 -369.56 -1.48 -10.19 16 27 C 0.09 1.26 11.47 127.77 1.47 2.72 16 28 C 0.06 1.34 11.40 83.54 0.95 2.29 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.59 7.93 -2.39 -0.02 1.57 16 33 H 0.06 1.06 8.12 -2.39 -0.02 1.04 16 34 H 0.06 2.24 5.88 -2.39 -0.01 2.23 16 35 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 1.94 6.40 -2.38 -0.02 1.92 16 37 H 0.06 1.81 8.12 -2.39 -0.02 1.79 16 38 H 0.12 2.99 7.93 -2.39 -0.02 2.97 16 39 H 0.40 18.46 7.90 -92.71 -0.73 17.73 16 40 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.41 7.49 8.60 -92.71 -0.80 6.70 16 42 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.20 3.53 8.06 -2.91 -0.02 3.51 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.19 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -77.79 403.21 0.76 -77.04 By element: Atomic # 1 Polarization: 40.84 SS G_CDS: -0.54 Total: 40.30 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: 8.94 Total: 24.44 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -9.58 Total: -134.19 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -0.09 Total: -51.75 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -77.79 0.76 -77.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268726136.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.841 kcal (2) G-P(sol) polarization free energy of solvation -77.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds