Wall clock time and date at job start Tue Mar 31 2020 19:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47274 * 2 1 4 4 C 1.53006 * 109.47099 * 240.00514 * 2 1 3 5 5 N 1.46905 * 109.47177 * 185.18355 * 4 2 1 6 6 C 1.46898 * 110.99839 * 163.93755 * 5 4 2 7 7 C 1.46900 * 111.00102 * 287.89342 * 5 4 2 8 8 C 1.50694 * 109.46926 * 170.00032 * 7 5 4 9 9 O 1.21292 * 120.00361 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99783 * 179.97438 * 8 7 5 11 11 C 1.37097 * 120.00375 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99513 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00462 * 180.02562 * 11 10 8 14 14 N 1.31409 * 119.99737 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47053 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.46910 * 120.00031 * 15 13 11 18 18 H 1.48499 * 109.47037 * 239.99914 * 15 13 11 19 19 N 1.46499 * 109.47195 * 120.00510 * 2 1 3 20 20 C 1.34775 * 120.00186 * 274.60562 * 19 2 1 21 21 O 1.21284 * 119.99742 * 359.97438 * 20 19 2 22 22 C 1.50699 * 119.99996 * 180.02562 * 20 19 2 23 23 C 1.53001 * 109.47027 * 179.97438 * 22 20 19 24 24 N 1.46499 * 109.47217 * 179.97438 * 23 22 20 25 25 C 1.36881 * 126.39978 * 89.99820 * 24 23 22 26 26 C 1.34672 * 106.81888 * 179.97438 * 25 24 23 27 27 N 1.34127 * 108.01689 * 0.02562 * 26 25 24 28 28 C 1.30497 * 109.26186 * 359.71954 * 27 26 25 29 29 H 1.09000 * 109.46883 * 59.99465 * 1 2 3 30 30 H 1.09002 * 109.46958 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47216 * 299.99481 * 1 2 3 32 32 H 1.08997 * 109.47041 * 305.18429 * 4 2 1 33 33 H 1.08995 * 109.47030 * 65.18628 * 4 2 1 34 34 H 1.08995 * 109.47352 * 54.89315 * 6 5 4 35 35 H 1.08998 * 109.46947 * 174.89692 * 6 5 4 36 36 H 1.09009 * 109.46993 * 294.89318 * 6 5 4 37 37 H 1.08998 * 109.46566 * 289.99975 * 7 5 4 38 38 H 1.09000 * 109.47244 * 49.99805 * 7 5 4 39 39 H 0.97006 * 120.00096 * 359.97438 * 10 8 7 40 40 H 0.96996 * 119.99774 * 180.02562 * 14 13 11 41 41 H 0.97003 * 120.00281 * 94.60519 * 19 2 1 42 42 H 1.08993 * 109.47568 * 59.99752 * 22 20 19 43 43 H 1.09006 * 109.46803 * 299.99011 * 22 20 19 44 44 H 1.09002 * 109.47300 * 299.99848 * 23 22 20 45 45 H 1.09006 * 109.46891 * 59.99769 * 23 22 20 46 46 H 1.08001 * 126.58601 * 359.96430 * 25 24 23 47 47 H 1.07999 * 125.98719 * 179.97438 * 26 25 24 48 48 H 1.07997 * 125.64969 * 180.29404 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5037 -0.8305 -1.1885 6 6 3.9975 -1.8268 -2.1483 7 6 4.1389 0.4752 -1.4112 8 6 5.6103 0.3774 -1.1013 9 8 6.0834 -0.6763 -0.7307 10 7 6.4008 1.4607 -1.2358 11 6 7.7396 1.3716 -0.9544 12 1 8.1608 0.4335 -0.6244 13 6 8.5545 2.4886 -1.0926 14 7 8.0419 3.6302 -1.4935 15 14 10.3785 2.3674 -0.7083 16 1 10.7030 0.9834 -0.2789 17 1 11.1637 2.7064 -1.9223 18 1 10.7188 3.3161 0.3822 19 7 2.0183 -0.6907 1.1961 20 6 2.1546 -0.0166 2.3552 21 8 1.8734 1.1620 2.4078 22 6 2.6575 -0.7270 3.5854 23 6 2.7188 0.2585 4.7541 24 7 3.2071 -0.4322 5.9502 25 6 4.5133 -0.5559 6.3404 26 6 4.5120 -1.2599 7.4885 27 7 3.2397 -1.5583 7.7907 28 6 2.4521 -1.0610 6.8768 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6028 -1.7185 -1.2971 33 1 1.7545 -0.1564 -2.1368 34 1 3.6343 -1.5812 -3.1462 35 1 5.0875 -1.8233 -2.1472 36 1 3.6372 -2.8154 -1.8636 37 1 4.0056 0.7712 -2.4518 38 1 3.6791 1.2188 -0.7603 39 1 6.0226 2.3033 -1.5325 40 1 8.6108 4.4099 -1.5903 41 1 2.2436 -1.6333 1.1539 42 1 3.6539 -1.1248 3.3934 43 1 1.9813 -1.5449 3.8345 44 1 3.3951 1.0762 4.5048 45 1 1.7224 0.6567 4.9462 46 1 5.3786 -0.1643 5.8262 47 1 5.3828 -1.5364 8.0644 48 1 1.3752 -1.1411 6.8625 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268741839.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:02 Heat of formation + Delta-G solvation = -3.707117 kcal Electronic energy + Delta-G solvation = -29330.721060 eV Core-core repulsion = 25229.087846 eV Total energy + Delta-G solvation = -4101.633214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.11452 -39.99919 -38.69087 -37.06667 -35.06857 -34.65586 -33.81752 -31.67056 -31.28279 -30.14046 -29.39066 -28.11264 -27.04067 -24.97215 -24.71976 -22.59422 -21.40910 -21.27390 -20.77801 -20.40829 -19.16411 -17.94709 -17.87768 -16.75785 -16.38855 -16.17180 -15.80897 -15.31957 -15.23045 -14.77087 -14.53054 -14.37615 -14.08571 -13.97305 -13.80362 -13.68361 -13.59115 -13.31300 -13.22583 -12.91558 -12.60307 -12.47702 -12.22445 -12.11714 -11.89509 -11.60075 -11.53383 -11.50821 -11.27156 -11.08427 -10.71220 -10.37389 -10.26094 -10.13106 -10.01991 -9.67951 -9.52179 -9.07228 -8.61331 -8.50548 -8.03847 -7.95054 -6.45084 -3.86149 1.95281 2.53178 2.60433 3.09589 3.13389 3.23560 3.24546 3.30974 3.85219 3.91425 4.19019 4.43615 4.47713 4.58362 4.61503 4.69232 4.91218 4.98980 5.04192 5.11489 5.15465 5.22796 5.23522 5.33712 5.41600 5.47001 5.51239 5.55150 5.60858 5.64621 5.65584 5.84533 5.89951 5.94116 6.01220 6.17232 6.23037 6.40779 6.48203 6.64560 7.06444 7.15261 7.25575 7.48453 7.51752 7.97276 8.02496 8.18187 8.57560 9.14426 9.50647 10.01818 10.72636 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007303 B = 0.003391 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3833.055548 B = 8255.702130 C =11056.158179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.089 0.911 4 C 0.042 3.958 5 N -0.516 5.516 6 C 0.024 3.976 7 C 0.043 3.957 8 C 0.444 3.556 9 O -0.579 6.579 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.900 5.900 15 Si 0.928 3.072 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.281 1.281 19 N -0.701 5.701 20 C 0.523 3.477 21 O -0.548 6.548 22 C -0.157 4.157 23 C 0.121 3.879 24 N -0.458 5.458 25 C -0.050 4.050 26 C -0.035 4.035 27 N -0.499 5.499 28 C 0.176 3.824 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.014 0.986 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.404 0.596 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.176 0.824 47 H 0.169 0.831 48 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.735 -7.536 5.319 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.107 0.893 4 C -0.086 4.086 5 N -0.239 5.239 6 C -0.124 4.124 7 C -0.089 4.089 8 C 0.230 3.770 9 O -0.463 6.463 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.542 5.542 15 Si 0.755 3.245 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.207 1.207 19 N -0.351 5.351 20 C 0.308 3.692 21 O -0.426 6.426 22 C -0.198 4.198 23 C -0.002 4.002 24 N -0.140 5.140 25 C -0.183 4.183 26 C -0.182 4.182 27 N -0.217 5.217 28 C -0.106 4.106 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.239 0.761 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.193 0.807 47 H 0.186 0.814 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -15.684 -7.754 6.589 18.696 hybrid contribution 0.890 0.888 -1.748 2.153 sum -14.794 -6.865 4.841 17.013 Atomic orbital electron populations 1.22144 0.95071 1.02062 1.02681 1.20981 0.93225 0.97839 0.84010 0.89329 1.22492 0.89243 1.00831 0.96081 1.61563 1.03050 1.07367 1.51948 1.22517 1.03921 0.94461 0.91516 1.21918 0.95543 0.91491 0.99905 1.19680 0.87083 0.85284 0.84966 1.90479 1.75401 1.28901 1.51568 1.41886 1.08488 1.10670 1.58936 1.19727 0.82922 0.98036 1.42184 0.87892 1.25265 1.00625 0.94783 0.97231 1.69618 1.36794 1.00880 1.46860 0.85817 0.82038 0.78580 0.78019 1.19214 1.20742 1.20707 1.45719 1.66370 1.14123 1.08935 1.20173 0.77356 0.87132 0.84532 1.90723 1.50944 1.15664 1.85279 1.21968 1.04864 0.99755 0.93198 1.21609 1.02771 0.94296 0.81505 1.45638 1.07058 1.41419 1.19925 1.22897 0.87160 1.07750 1.00461 1.22304 0.95224 1.03475 0.97229 1.70273 1.02038 1.22986 1.26390 1.24976 0.98987 0.98758 0.87884 0.91603 0.92449 0.91875 0.90260 0.93340 0.96756 0.88628 0.92138 0.93489 0.89546 0.77537 0.91885 0.76090 0.87644 0.88375 0.87875 0.88040 0.80706 0.81423 0.78128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.49 37.16 0.35 -1.03 16 2 C 0.14 1.56 2.52 -67.93 -0.17 1.39 16 3 H 0.09 1.19 6.22 -51.93 -0.32 0.86 16 4 C 0.04 0.45 4.53 -3.82 -0.02 0.43 16 5 N -0.52 -7.52 4.17 -244.37 -1.02 -8.54 16 6 C 0.02 0.34 9.19 60.06 0.55 0.89 16 7 C 0.04 0.73 5.30 -4.98 -0.03 0.70 16 8 C 0.44 10.12 7.42 -10.99 -0.08 10.04 16 9 O -0.58 -14.84 13.96 5.55 0.08 -14.76 16 10 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 11 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 12 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 13 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 14 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 15 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 N -0.70 -7.51 4.79 -53.81 -0.26 -7.77 16 20 C 0.52 6.20 7.80 -10.99 -0.09 6.12 16 21 O -0.55 -8.32 15.64 5.55 0.09 -8.23 16 22 C -0.16 -1.44 6.02 -27.88 -0.17 -1.61 16 23 C 0.12 1.14 5.44 -4.04 -0.02 1.12 16 24 N -0.46 -4.72 2.75 -118.57 -0.33 -5.05 16 25 C -0.05 -0.55 11.58 -16.56 -0.19 -0.74 16 26 C -0.03 -0.41 11.87 -17.81 -0.21 -0.63 16 27 N -0.50 -6.51 11.25 -14.67 -0.16 -6.68 16 28 C 0.18 1.85 12.56 -90.37 -1.14 0.72 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.70 7.99 -51.93 -0.42 0.28 16 33 H 0.05 0.48 8.05 -51.93 -0.42 0.06 16 34 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 35 H 0.10 1.75 5.79 -51.93 -0.30 1.45 16 36 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 37 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 38 H 0.09 1.44 6.50 -51.93 -0.34 1.10 16 39 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 41 H 0.40 3.78 8.61 -40.82 -0.35 3.43 16 42 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 45 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 46 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 47 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 48 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 402.68 15.07 6.07 6.07 Total: -1.00 -34.11 402.68 -8.81 -42.92 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -7.47 Total: 14.41 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -1.45 Total: 9.57 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -1.10 Total: -65.77 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.16 Total: -23.00 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.11 -8.81 -42.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268741839.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.215 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds