Wall clock time and date at job start Tue Mar 31 2020 19:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47274 * 2 1 4 4 C 1.53006 * 109.47099 * 240.00514 * 2 1 3 5 5 N 1.46905 * 109.47177 * 185.18355 * 4 2 1 6 6 C 1.46898 * 110.99839 * 163.93755 * 5 4 2 7 7 C 1.46900 * 111.00102 * 287.89342 * 5 4 2 8 8 C 1.50694 * 109.46926 * 170.00032 * 7 5 4 9 9 O 1.21292 * 120.00361 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99783 * 179.97438 * 8 7 5 11 11 C 1.37097 * 120.00375 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99513 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00462 * 180.02562 * 11 10 8 14 14 N 1.31409 * 119.99737 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00045 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47053 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.46910 * 120.00031 * 15 13 11 18 18 H 1.48499 * 109.47037 * 239.99914 * 15 13 11 19 19 N 1.46499 * 109.47195 * 120.00510 * 2 1 3 20 20 C 1.34775 * 120.00186 * 274.60562 * 19 2 1 21 21 O 1.21284 * 119.99742 * 359.97438 * 20 19 2 22 22 C 1.50699 * 119.99996 * 180.02562 * 20 19 2 23 23 C 1.53001 * 109.47027 * 179.97438 * 22 20 19 24 24 N 1.46499 * 109.47217 * 179.97438 * 23 22 20 25 25 C 1.36881 * 126.39978 * 89.99820 * 24 23 22 26 26 C 1.34672 * 106.81888 * 179.97438 * 25 24 23 27 27 N 1.34127 * 108.01689 * 0.02562 * 26 25 24 28 28 C 1.30497 * 109.26186 * 359.71954 * 27 26 25 29 29 H 1.09000 * 109.46883 * 59.99465 * 1 2 3 30 30 H 1.09002 * 109.46958 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47216 * 299.99481 * 1 2 3 32 32 H 1.08997 * 109.47041 * 305.18429 * 4 2 1 33 33 H 1.08995 * 109.47030 * 65.18628 * 4 2 1 34 34 H 1.08995 * 109.47352 * 54.89315 * 6 5 4 35 35 H 1.08998 * 109.46947 * 174.89692 * 6 5 4 36 36 H 1.09009 * 109.46993 * 294.89318 * 6 5 4 37 37 H 1.08998 * 109.46566 * 289.99975 * 7 5 4 38 38 H 1.09000 * 109.47244 * 49.99805 * 7 5 4 39 39 H 0.97006 * 120.00096 * 359.97438 * 10 8 7 40 40 H 0.96996 * 119.99774 * 180.02562 * 14 13 11 41 41 H 0.97003 * 120.00281 * 94.60519 * 19 2 1 42 42 H 1.08993 * 109.47568 * 59.99752 * 22 20 19 43 43 H 1.09006 * 109.46803 * 299.99011 * 22 20 19 44 44 H 1.09002 * 109.47300 * 299.99848 * 23 22 20 45 45 H 1.09006 * 109.46891 * 59.99769 * 23 22 20 46 46 H 1.08001 * 126.58601 * 359.96430 * 25 24 23 47 47 H 1.07999 * 125.98719 * 179.97438 * 26 25 24 48 48 H 1.07997 * 125.64969 * 180.29404 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5037 -0.8305 -1.1885 6 6 3.9975 -1.8268 -2.1483 7 6 4.1389 0.4752 -1.4112 8 6 5.6103 0.3774 -1.1013 9 8 6.0834 -0.6763 -0.7307 10 7 6.4008 1.4607 -1.2358 11 6 7.7396 1.3716 -0.9544 12 1 8.1608 0.4335 -0.6244 13 6 8.5545 2.4886 -1.0926 14 7 8.0419 3.6302 -1.4935 15 14 10.3785 2.3674 -0.7083 16 1 10.7030 0.9834 -0.2789 17 1 11.1637 2.7064 -1.9223 18 1 10.7188 3.3161 0.3822 19 7 2.0183 -0.6907 1.1961 20 6 2.1546 -0.0166 2.3552 21 8 1.8734 1.1620 2.4078 22 6 2.6575 -0.7270 3.5854 23 6 2.7188 0.2585 4.7541 24 7 3.2071 -0.4322 5.9502 25 6 4.5133 -0.5559 6.3404 26 6 4.5120 -1.2599 7.4885 27 7 3.2397 -1.5583 7.7907 28 6 2.4521 -1.0610 6.8768 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6028 -1.7185 -1.2971 33 1 1.7545 -0.1564 -2.1368 34 1 3.6343 -1.5812 -3.1462 35 1 5.0875 -1.8233 -2.1472 36 1 3.6372 -2.8154 -1.8636 37 1 4.0056 0.7712 -2.4518 38 1 3.6791 1.2188 -0.7603 39 1 6.0226 2.3033 -1.5325 40 1 8.6108 4.4099 -1.5903 41 1 2.2436 -1.6333 1.1539 42 1 3.6539 -1.1248 3.3934 43 1 1.9813 -1.5449 3.8345 44 1 3.3951 1.0762 4.5048 45 1 1.7224 0.6567 4.9462 46 1 5.3786 -0.1643 5.8262 47 1 5.3828 -1.5364 8.0644 48 1 1.3752 -1.1411 6.8625 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268741839.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:01 Heat of formation + Delta-G solvation = -27.837721 kcal Electronic energy + Delta-G solvation = -29331.767442 eV Core-core repulsion = 25229.087846 eV Total energy + Delta-G solvation = -4102.679596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.94907 -40.97979 -40.28599 -38.33655 -36.20259 -35.75639 -35.47174 -33.28412 -32.55047 -30.97050 -30.22488 -29.59385 -27.96673 -26.61440 -25.76656 -23.72056 -22.25637 -22.22232 -21.69431 -21.33329 -20.83890 -19.85327 -18.78097 -17.96548 -17.48026 -17.30065 -16.77436 -16.61553 -16.49907 -16.18452 -15.84696 -15.41569 -15.36110 -15.20894 -15.03581 -14.83178 -14.61484 -14.25922 -14.17751 -13.95223 -13.70554 -13.45205 -13.39016 -13.31834 -13.08039 -12.91572 -12.80991 -12.67426 -12.45942 -12.37896 -12.34583 -12.12926 -11.69263 -11.45307 -11.05340 -10.93507 -10.56433 -10.27239 -10.01152 -9.96660 -9.46700 -9.21868 -8.47550 -5.96161 1.12422 1.35047 1.40347 1.54213 1.64776 1.75730 2.04649 2.22345 2.26587 2.41024 2.79361 3.19452 3.36928 3.65220 3.71233 3.80624 3.88101 3.88798 4.11757 4.16665 4.19400 4.32587 4.36147 4.42895 4.45807 4.50995 4.58342 4.62079 4.66068 4.72728 4.77218 4.80539 4.81966 4.85947 5.08370 5.21553 5.31825 5.34009 5.39980 5.59516 5.79882 5.86959 6.05759 6.20352 6.27759 6.59057 6.62103 7.12227 7.12791 7.30440 7.55714 8.10817 8.70245 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007303 B = 0.003391 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3833.055548 B = 8255.702130 C =11056.158179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.143 3.857 3 H 0.059 0.941 4 C 0.048 3.952 5 N -0.528 5.528 6 C 0.028 3.972 7 C 0.057 3.943 8 C 0.444 3.556 9 O -0.609 6.609 10 N -0.578 5.578 11 C -0.329 4.329 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.922 5.922 15 Si 0.991 3.009 16 H -0.271 1.271 17 H -0.271 1.271 18 H -0.273 1.273 19 N -0.696 5.696 20 C 0.518 3.482 21 O -0.586 6.586 22 C -0.145 4.145 23 C 0.126 3.874 24 N -0.457 5.457 25 C -0.061 4.061 26 C -0.051 4.051 27 N -0.535 5.535 28 C 0.181 3.819 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.393 0.607 40 H 0.277 0.723 41 H 0.413 0.587 42 H 0.096 0.904 43 H 0.126 0.874 44 H 0.085 0.915 45 H 0.115 0.885 46 H 0.184 0.816 47 H 0.180 0.820 48 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.371 -8.416 4.776 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 H 0.077 0.923 4 C -0.080 4.080 5 N -0.252 5.252 6 C -0.119 4.119 7 C -0.074 4.074 8 C 0.231 3.769 9 O -0.495 6.495 10 N -0.215 5.215 11 C -0.459 4.459 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.564 5.564 15 Si 0.815 3.185 16 H -0.196 1.196 17 H -0.196 1.196 18 H -0.198 1.198 19 N -0.346 5.346 20 C 0.304 3.696 21 O -0.467 6.467 22 C -0.186 4.186 23 C 0.004 3.996 24 N -0.139 5.139 25 C -0.194 4.194 26 C -0.198 4.198 27 N -0.254 5.254 28 C -0.101 4.101 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.226 0.774 40 H 0.086 0.914 41 H 0.249 0.751 42 H 0.115 0.885 43 H 0.144 0.856 44 H 0.104 0.896 45 H 0.133 0.867 46 H 0.201 0.799 47 H 0.197 0.803 48 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -17.339 -8.655 6.022 20.293 hybrid contribution 1.326 1.106 -1.598 2.352 sum -16.014 -7.549 4.424 18.248 Atomic orbital electron populations 1.22046 0.92960 1.03320 1.02594 1.21004 0.94781 0.96280 0.84151 0.92330 1.22580 0.86281 1.02761 0.96365 1.61513 1.05453 1.05837 1.52413 1.22408 1.01172 0.95720 0.92633 1.21713 0.91380 0.93412 1.00894 1.20702 0.89254 0.84043 0.82869 1.90457 1.76763 1.29924 1.52336 1.41982 1.08151 1.11405 1.59955 1.19677 0.84541 0.97702 1.43939 0.90178 1.26032 1.04528 0.94185 0.96622 1.69684 1.38249 1.01321 1.47108 0.84895 0.77040 0.78331 0.78243 1.19590 1.19614 1.19810 1.45750 1.65703 1.14477 1.08697 1.20586 0.76799 0.86752 0.85433 1.90707 1.52754 1.17313 1.85922 1.21883 1.04808 1.00028 0.91854 1.21568 1.02937 0.93811 0.81315 1.45693 1.06823 1.41314 1.20080 1.23117 0.87924 1.07857 1.00549 1.22611 0.95560 1.03833 0.97787 1.70267 1.02749 1.24559 1.27827 1.25646 1.00228 0.97308 0.86907 0.90325 0.90437 0.93372 0.87347 0.91833 0.94970 0.93066 0.89685 0.91737 0.89027 0.77368 0.91398 0.75114 0.88538 0.85572 0.89602 0.86677 0.79904 0.80332 0.74824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.49 71.98 0.68 -1.49 16 2 C 0.14 2.80 2.52 44.99 0.11 2.91 16 3 H 0.06 1.53 6.22 -2.39 -0.01 1.51 16 4 C 0.05 0.86 4.53 86.30 0.39 1.25 16 5 N -0.53 -14.42 4.17 -927.05 -3.87 -18.29 16 6 C 0.03 0.77 9.19 127.69 1.17 1.94 16 7 C 0.06 1.92 5.30 85.56 0.45 2.37 16 8 C 0.44 20.59 7.42 87.66 0.65 21.24 16 9 O -0.61 -32.03 13.96 -3.07 -0.04 -32.07 16 10 N -0.58 -29.59 5.29 -306.99 -1.62 -31.22 16 11 C -0.33 -18.57 9.68 84.04 0.81 -17.76 16 12 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 13 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 14 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 15 Si 0.99 42.92 29.55 68.60 2.03 44.94 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 N -0.70 -13.74 4.79 -442.53 -2.12 -15.86 16 20 C 0.52 11.85 7.80 87.66 0.68 12.54 16 21 O -0.59 -17.79 15.64 -3.04 -0.05 -17.83 16 22 C -0.15 -2.48 6.02 29.85 0.18 -2.30 16 23 C 0.13 2.28 5.44 86.38 0.47 2.75 16 24 N -0.46 -9.01 2.75 -529.05 -1.46 -10.47 16 25 C -0.06 -1.35 11.58 83.09 0.96 -0.39 16 26 C -0.05 -1.21 11.87 83.52 0.99 -0.22 16 27 N -0.54 -13.64 11.25 -200.31 -2.25 -15.89 16 28 C 0.18 3.54 12.56 180.26 2.26 5.81 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 1.39 7.99 -2.39 -0.02 1.37 16 33 H 0.06 1.01 8.05 -2.39 -0.02 1.00 16 34 H 0.03 0.74 8.13 -2.39 -0.02 0.73 16 35 H 0.05 1.87 5.79 -2.39 -0.01 1.86 16 36 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 38 H 0.09 3.01 6.50 -2.39 -0.02 3.00 16 39 H 0.39 19.50 7.90 -92.70 -0.73 18.77 16 40 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 41 H 0.41 6.75 8.61 -92.71 -0.80 5.96 16 42 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 43 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.09 1.87 8.10 -2.39 -0.02 1.85 16 45 H 0.12 1.77 8.10 -2.38 -0.02 1.76 16 46 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 47 H 0.18 3.52 8.06 -2.91 -0.02 3.50 16 48 H 0.24 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -76.04 402.68 0.65 -75.39 By element: Atomic # 1 Polarization: 43.35 SS G_CDS: -0.55 Total: 42.81 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 10.30 Total: 28.37 kcal Atomic # 7 Polarization: -130.57 SS G_CDS: -11.04 Total: -141.60 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -0.09 Total: -49.91 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -76.04 0.65 -75.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268741839.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.556 kcal (2) G-P(sol) polarization free energy of solvation -76.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds