Wall clock time and date at job start Tue Mar 31 2020 20:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46930 * 2 1 4 4 C 1.34258 * 125.75105 * 125.00174 * 3 2 1 5 5 C 1.38043 * 107.42059 * 179.97438 * 4 3 2 6 6 C 1.47423 * 126.41969 * 179.97438 * 5 4 3 7 7 O 1.21598 * 120.00119 * 353.85134 * 6 5 4 8 8 N 1.34784 * 119.99980 * 173.84306 * 6 5 4 9 9 C 1.46495 * 119.99869 * 1.99368 * 8 6 5 10 10 C 1.46499 * 119.99669 * 181.99531 * 8 6 5 11 11 C 1.52997 * 109.47476 * 90.00197 * 10 8 6 12 12 C 1.53000 * 109.47365 * 179.97438 * 11 10 8 13 13 N 1.46901 * 109.47092 * 180.02562 * 12 11 10 14 14 C 1.46894 * 110.99829 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.47059 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99662 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99872 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99928 * 180.02562 * 17 15 14 19 19 H 1.08007 * 119.99551 * 0.02562 * 18 17 15 20 20 C 1.38946 * 119.99792 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00396 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99710 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47035 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46813 * 120.00057 * 22 20 18 25 25 H 1.48497 * 109.47088 * 240.00047 * 22 20 18 26 26 C 1.41298 * 107.16476 * 359.97438 * 5 4 3 27 27 N 1.30446 * 108.02460 * 359.71965 * 26 5 4 28 28 H 1.08994 * 109.47023 * 300.00148 * 1 2 3 29 29 H 1.09005 * 109.46642 * 59.99957 * 1 2 3 30 30 H 1.08998 * 109.46955 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47299 * 119.99852 * 2 1 3 32 32 H 1.08999 * 109.47481 * 240.00407 * 2 1 3 33 33 H 1.08008 * 126.29422 * 359.97438 * 4 3 2 34 34 H 1.09003 * 109.46946 * 60.16113 * 9 8 6 35 35 H 1.09005 * 109.46998 * 180.15956 * 9 8 6 36 36 H 1.08999 * 109.47519 * 300.15846 * 9 8 6 37 37 H 1.08998 * 109.46893 * 210.00166 * 10 8 6 38 38 H 1.09000 * 109.47550 * 329.99616 * 10 8 6 39 39 H 1.08998 * 109.47035 * 299.99883 * 11 10 8 40 40 H 1.09009 * 109.46907 * 59.99715 * 11 10 8 41 41 H 1.09002 * 109.47032 * 299.99603 * 12 11 10 42 42 H 1.08998 * 109.46716 * 59.99956 * 12 11 10 43 43 H 1.00896 * 111.00188 * 56.03985 * 13 12 11 44 44 H 1.09003 * 109.47129 * 299.99444 * 14 13 12 45 45 H 1.09004 * 109.47453 * 59.99663 * 14 13 12 46 46 H 0.96998 * 120.00048 * 0.02562 * 17 15 14 47 47 H 0.97001 * 119.99713 * 180.02562 * 21 20 18 48 48 H 1.08001 * 125.98738 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8690 1.9125 0.8925 5 6 3.0714 3.2308 0.5366 6 6 3.9326 4.2033 1.2337 7 8 4.4610 3.9023 2.2866 8 7 4.1343 5.4261 0.7039 9 6 3.4631 5.8043 -0.5422 10 6 5.0247 6.3770 1.3741 11 6 6.4510 6.1961 0.8508 12 6 7.3808 7.1896 1.5503 13 7 8.7501 7.0163 1.0473 14 6 9.6729 7.9555 1.6986 15 6 11.0646 7.7480 1.1589 16 8 11.2675 6.9013 0.3145 17 7 12.0835 8.5039 1.6139 18 6 13.3495 8.3155 1.1225 19 1 13.5301 7.5616 0.3705 20 6 14.3997 9.0952 1.5912 21 7 14.1797 10.0128 2.5057 22 14 16.1248 8.8380 0.9222 23 1 16.1062 7.7518 -0.0903 24 1 16.6033 10.0942 0.2911 25 1 17.0360 8.4640 2.0335 26 6 2.2986 3.4735 -0.6212 27 7 1.6826 2.3672 -0.9345 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.3134 1.4023 1.7344 34 1 2.3832 5.7550 -0.4026 35 1 3.7483 6.8205 -0.8146 36 1 3.7585 5.1188 -1.3365 37 1 4.6894 7.3940 1.1708 38 1 5.0064 6.1964 2.4489 39 1 6.7863 5.1791 1.0540 40 1 6.4693 6.3768 -0.2241 41 1 7.0453 8.2065 1.3466 42 1 7.3625 7.0093 2.6251 43 1 8.7819 7.1148 0.0437 44 1 9.3532 8.9778 1.4967 45 1 9.6708 7.7799 2.7744 46 1 11.9210 9.1812 2.2889 47 1 14.9129 10.5574 2.8326 48 1 2.2329 4.4098 -1.1556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268785033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:31 Heat of formation + Delta-G solvation = 20.534582 kcal Electronic energy + Delta-G solvation = -27586.523653 eV Core-core repulsion = 23485.941638 eV Total energy + Delta-G solvation = -4100.582015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.82454 -39.62999 -38.24888 -36.48349 -35.52568 -34.91896 -33.83589 -32.04887 -31.15075 -30.97349 -29.87853 -27.79799 -26.79408 -25.20962 -24.34427 -23.44051 -22.18345 -21.40056 -21.10456 -19.69495 -19.15477 -17.83711 -17.72459 -16.65495 -16.49119 -16.12042 -15.90838 -15.63830 -15.45405 -14.92547 -14.60518 -14.50433 -14.22674 -14.17573 -13.86170 -13.53221 -13.48431 -13.32602 -13.25652 -12.96293 -12.71499 -12.59590 -12.10447 -12.05852 -11.96552 -11.73624 -11.61463 -11.44505 -11.36316 -11.24550 -11.02842 -10.67397 -10.31338 -10.18848 -9.99895 -9.97775 -9.48177 -9.09949 -8.83291 -8.40100 -7.98325 -7.91002 -6.38019 -3.78621 1.19376 1.84878 1.90541 2.77837 3.19199 3.23458 3.29414 3.37070 3.90267 3.95976 4.15252 4.32246 4.36532 4.38957 4.44477 4.52924 4.61398 4.75352 4.90659 4.95606 4.98049 5.05182 5.13310 5.20044 5.21185 5.24390 5.29027 5.31828 5.37521 5.47404 5.51715 5.56974 5.75287 5.85537 6.00318 6.05030 6.14396 6.20516 6.33074 6.40192 6.42790 7.12897 7.20117 7.30894 7.59087 7.74844 8.07401 8.10965 8.65846 9.22067 9.58900 10.10675 10.79917 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026869 B = 0.001466 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.845948 B =19101.469116 C =19537.150838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.124 3.876 3 N -0.361 5.361 4 C 0.129 3.871 5 C -0.293 4.293 6 C 0.595 3.405 7 O -0.544 6.544 8 N -0.612 5.612 9 C 0.070 3.930 10 C 0.119 3.881 11 C -0.132 4.132 12 C 0.063 3.937 13 N -0.670 5.670 14 C 0.051 3.949 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.058 3.942 27 N -0.298 5.298 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.188 0.812 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.348 0.652 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.270 0.730 48 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.002 -12.375 -3.835 33.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.004 3.996 3 N -0.140 5.140 4 C -0.023 4.023 5 C -0.307 4.307 6 C 0.384 3.616 7 O -0.422 6.422 8 N -0.345 5.345 9 C -0.073 4.073 10 C -0.004 4.004 11 C -0.171 4.171 12 C -0.067 4.067 13 N -0.302 5.302 14 C -0.082 4.082 15 C 0.227 3.773 16 O -0.467 6.467 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.129 4.129 27 N -0.118 5.118 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.205 0.795 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.091 0.909 43 H 0.167 0.833 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -31.168 -14.216 -4.164 34.509 hybrid contribution 1.151 1.634 0.237 2.012 sum -30.017 -12.582 -3.927 32.784 Atomic orbital electron populations 1.22055 0.93343 1.03183 1.03744 1.21856 0.96462 0.76874 1.04426 1.48691 1.34305 1.10761 1.20247 1.23010 0.91331 0.93629 0.94334 1.20216 1.11625 0.95434 1.03473 1.17247 0.79677 0.80804 0.83840 1.90790 1.51012 1.77629 1.22773 1.47546 1.47027 1.14452 1.25455 1.22285 0.96987 1.01870 0.86208 1.21488 0.88849 0.91474 0.98539 1.21907 0.93531 1.01525 1.00098 1.21859 0.88369 0.96326 1.00133 1.60015 1.04818 1.54253 1.11110 1.21669 0.92639 0.93914 0.99939 1.19845 0.85949 0.85139 0.86379 1.90519 1.84374 1.36446 1.35360 1.41871 1.07183 1.33356 1.37770 1.19766 0.83256 1.18628 1.21146 0.87886 1.25253 1.00226 0.95908 0.96579 1.69623 1.33332 1.22078 1.29361 0.85805 0.81618 0.78239 0.78707 1.19226 1.20808 1.20755 1.25206 0.94257 0.98040 0.95350 1.77164 1.24192 0.97156 1.13273 0.91951 0.90932 0.90390 0.88149 0.89184 0.79529 0.91465 0.90174 0.91349 0.90506 0.89489 0.90424 0.91952 0.95616 0.90914 0.83297 0.93930 0.89579 0.77458 0.91970 0.77654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.60 10.09 37.16 0.38 -0.23 16 2 C 0.12 0.50 7.21 -4.04 -0.03 0.48 16 3 N -0.36 -2.78 3.65 -60.80 -0.22 -3.01 16 4 C 0.13 1.10 11.25 -16.56 -0.19 0.91 16 5 C -0.29 -2.90 6.04 -105.07 -0.63 -3.54 16 6 C 0.59 7.08 7.67 -12.52 -0.10 6.99 16 7 O -0.54 -8.43 16.47 5.28 0.09 -8.34 16 8 N -0.61 -5.79 2.87 -182.86 -0.53 -6.32 16 9 C 0.07 0.39 8.55 59.84 0.51 0.90 16 10 C 0.12 1.15 5.39 -4.04 -0.02 1.13 16 11 C -0.13 -1.53 5.80 -26.73 -0.16 -1.68 16 12 C 0.06 0.81 5.69 -3.82 -0.02 0.79 16 13 N -0.67 -11.48 6.12 -115.06 -0.70 -12.18 16 14 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 15 C 0.44 10.79 7.82 -10.98 -0.09 10.70 16 16 O -0.58 -16.37 15.78 5.55 0.09 -16.29 16 17 N -0.56 -14.69 5.29 -10.96 -0.06 -14.75 16 18 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 19 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 22 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 C 0.06 0.48 9.91 -16.98 -0.17 0.31 16 27 N -0.30 -2.75 12.34 30.86 0.38 -2.37 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.10 0.18 8.06 -51.93 -0.42 -0.24 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.19 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.07 0.27 6.31 -51.93 -0.33 -0.05 16 35 H 0.08 0.33 7.80 -51.93 -0.40 -0.07 16 36 H 0.07 0.36 6.64 -51.93 -0.34 0.01 16 37 H 0.08 0.56 7.92 -51.93 -0.41 0.14 16 38 H 0.09 0.97 7.39 -51.93 -0.38 0.58 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.35 6.05 8.43 -39.29 -0.33 5.72 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 46 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.21 1.08 4.17 -52.49 -0.22 0.86 16 LS Contribution 402.79 15.07 6.07 6.07 Total: -1.00 -37.27 402.79 -7.29 -44.56 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -7.33 Total: 10.94 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -0.78 Total: 9.52 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.40 Total: -62.81 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: 0.17 Total: -24.63 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.27 -7.29 -44.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268785033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.094 kcal (2) G-P(sol) polarization free energy of solvation -37.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds