Wall clock time and date at job start Tue Mar 31 2020 20:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.46930 * 2 1 4 4 C 1.34258 * 125.75105 * 125.00174 * 3 2 1 5 5 C 1.38043 * 107.42059 * 179.97438 * 4 3 2 6 6 C 1.47423 * 126.41969 * 179.97438 * 5 4 3 7 7 O 1.21598 * 120.00119 * 353.85134 * 6 5 4 8 8 N 1.34784 * 119.99980 * 173.84306 * 6 5 4 9 9 C 1.46495 * 119.99869 * 1.99368 * 8 6 5 10 10 C 1.46499 * 119.99669 * 181.99531 * 8 6 5 11 11 C 1.52997 * 109.47476 * 90.00197 * 10 8 6 12 12 C 1.53000 * 109.47365 * 179.97438 * 11 10 8 13 13 N 1.46901 * 109.47092 * 180.02562 * 12 11 10 14 14 C 1.46894 * 110.99829 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.47059 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99662 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99872 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99928 * 180.02562 * 17 15 14 19 19 H 1.08007 * 119.99551 * 0.02562 * 18 17 15 20 20 C 1.38946 * 119.99792 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00396 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99710 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47035 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46813 * 120.00057 * 22 20 18 25 25 H 1.48497 * 109.47088 * 240.00047 * 22 20 18 26 26 C 1.41298 * 107.16476 * 359.97438 * 5 4 3 27 27 N 1.30446 * 108.02460 * 359.71965 * 26 5 4 28 28 H 1.08994 * 109.47023 * 300.00148 * 1 2 3 29 29 H 1.09005 * 109.46642 * 59.99957 * 1 2 3 30 30 H 1.08998 * 109.46955 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47299 * 119.99852 * 2 1 3 32 32 H 1.08999 * 109.47481 * 240.00407 * 2 1 3 33 33 H 1.08008 * 126.29422 * 359.97438 * 4 3 2 34 34 H 1.09003 * 109.46946 * 60.16113 * 9 8 6 35 35 H 1.09005 * 109.46998 * 180.15956 * 9 8 6 36 36 H 1.08999 * 109.47519 * 300.15846 * 9 8 6 37 37 H 1.08998 * 109.46893 * 210.00166 * 10 8 6 38 38 H 1.09000 * 109.47550 * 329.99616 * 10 8 6 39 39 H 1.08998 * 109.47035 * 299.99883 * 11 10 8 40 40 H 1.09009 * 109.46907 * 59.99715 * 11 10 8 41 41 H 1.09002 * 109.47032 * 299.99603 * 12 11 10 42 42 H 1.08998 * 109.46716 * 59.99956 * 12 11 10 43 43 H 1.00896 * 111.00188 * 56.03985 * 13 12 11 44 44 H 1.09003 * 109.47129 * 299.99444 * 14 13 12 45 45 H 1.09004 * 109.47453 * 59.99663 * 14 13 12 46 46 H 0.96998 * 120.00048 * 0.02562 * 17 15 14 47 47 H 0.97001 * 119.99713 * 180.02562 * 21 20 18 48 48 H 1.08001 * 125.98738 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8690 1.9125 0.8925 5 6 3.0714 3.2308 0.5366 6 6 3.9326 4.2033 1.2337 7 8 4.4610 3.9023 2.2866 8 7 4.1343 5.4261 0.7039 9 6 3.4631 5.8043 -0.5422 10 6 5.0247 6.3770 1.3741 11 6 6.4510 6.1961 0.8508 12 6 7.3808 7.1896 1.5503 13 7 8.7501 7.0163 1.0473 14 6 9.6729 7.9555 1.6986 15 6 11.0646 7.7480 1.1589 16 8 11.2675 6.9013 0.3145 17 7 12.0835 8.5039 1.6139 18 6 13.3495 8.3155 1.1225 19 1 13.5301 7.5616 0.3705 20 6 14.3997 9.0952 1.5912 21 7 14.1797 10.0128 2.5057 22 14 16.1248 8.8380 0.9222 23 1 16.1062 7.7518 -0.0903 24 1 16.6033 10.0942 0.2911 25 1 17.0360 8.4640 2.0335 26 6 2.2986 3.4735 -0.6212 27 7 1.6826 2.3672 -0.9345 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.3134 1.4023 1.7344 34 1 2.3832 5.7550 -0.4026 35 1 3.7483 6.8205 -0.8146 36 1 3.7585 5.1188 -1.3365 37 1 4.6894 7.3940 1.1708 38 1 5.0064 6.1964 2.4489 39 1 6.7863 5.1791 1.0540 40 1 6.4693 6.3768 -0.2241 41 1 7.0453 8.2065 1.3466 42 1 7.3625 7.0093 2.6251 43 1 8.7819 7.1148 0.0437 44 1 9.3532 8.9778 1.4967 45 1 9.6708 7.7799 2.7744 46 1 11.9210 9.1812 2.2889 47 1 14.9129 10.5574 2.8326 48 1 2.2329 4.4098 -1.1556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268785033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:31 Heat of formation + Delta-G solvation = -8.021061 kcal Electronic energy + Delta-G solvation = -27587.761919 eV Core-core repulsion = 23485.941638 eV Total energy + Delta-G solvation = -4101.820281 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.45530 -40.44546 -40.13787 -37.58653 -36.55030 -35.88219 -35.42154 -33.34551 -32.93791 -31.57002 -30.57713 -28.79851 -27.82926 -26.58842 -25.29290 -24.45951 -23.03395 -22.29947 -21.67551 -21.06143 -20.40384 -19.89964 -18.34722 -17.88793 -17.33329 -17.15354 -16.89340 -16.75475 -16.48679 -16.16433 -15.90136 -15.61079 -15.45431 -15.13023 -15.01235 -14.72481 -14.50945 -14.19706 -14.03677 -13.91601 -13.55010 -13.39816 -13.28242 -13.04884 -12.99119 -12.88123 -12.77155 -12.48822 -12.41240 -12.38494 -12.36497 -12.11151 -11.86775 -11.62458 -11.51426 -10.86106 -10.59817 -10.36073 -10.01688 -9.83106 -9.52966 -9.29482 -8.46827 -5.95762 0.51567 1.18313 1.36795 1.40595 1.41970 1.56459 2.04686 2.07473 2.29829 2.44619 2.96422 3.20396 3.44965 3.55324 3.78006 3.85754 4.01104 4.06367 4.07409 4.17150 4.29133 4.33700 4.35152 4.40613 4.42012 4.47470 4.53116 4.60139 4.67133 4.67482 4.69480 4.78411 4.83858 4.86678 4.93190 5.19366 5.21417 5.26217 5.41060 5.43253 5.64567 5.86880 5.90668 6.12915 6.41925 6.44214 6.54857 6.60226 7.12484 7.24553 7.55851 8.11425 8.70833 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026869 B = 0.001466 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.845948 B =19101.469116 C =19537.150838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 N -0.358 5.358 4 C 0.126 3.874 5 C -0.318 4.318 6 C 0.587 3.413 7 O -0.594 6.594 8 N -0.610 5.610 9 C 0.060 3.940 10 C 0.123 3.877 11 C -0.120 4.120 12 C 0.067 3.933 13 N -0.691 5.691 14 C 0.066 3.934 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.274 1.274 24 H -0.269 1.269 25 H -0.271 1.271 26 C 0.065 3.935 27 N -0.322 5.322 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.201 0.799 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.068 0.932 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.344 0.656 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.136 -11.674 -4.289 34.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.005 4.005 3 N -0.136 5.136 4 C -0.027 4.027 5 C -0.333 4.333 6 C 0.378 3.622 7 O -0.476 6.476 8 N -0.341 5.341 9 C -0.081 4.081 10 C 0.000 4.000 11 C -0.159 4.159 12 C -0.063 4.063 13 N -0.324 5.324 14 C -0.066 4.066 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.465 4.465 19 H 0.096 0.904 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.199 1.199 24 H -0.194 1.194 25 H -0.196 1.196 26 C -0.121 4.121 27 N -0.142 5.142 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.144 0.856 32 H 0.117 0.883 33 H 0.217 0.783 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.130 0.870 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.163 0.837 44 H 0.089 0.911 45 H 0.119 0.881 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -32.354 -13.487 -4.632 35.358 hybrid contribution 1.439 1.368 0.363 2.018 sum -30.915 -12.119 -4.270 33.479 Atomic orbital electron populations 1.22010 0.92982 1.04267 1.02433 1.22238 0.96773 0.75378 1.06139 1.49004 1.33597 1.11602 1.19420 1.23308 0.91125 0.93634 0.94636 1.20255 1.12635 0.95790 1.04573 1.17622 0.79469 0.81696 0.83425 1.90750 1.53169 1.78718 1.24943 1.47656 1.46483 1.13630 1.26342 1.22564 0.97841 1.03189 0.84509 1.21459 0.87854 0.93200 0.97512 1.21777 0.94476 0.99042 1.00611 1.21911 0.86246 0.98137 0.99958 1.60003 1.06907 1.54485 1.10958 1.21527 0.89009 0.95798 1.00300 1.20929 0.87854 0.83623 0.85242 1.90485 1.85523 1.38002 1.37167 1.41930 1.07037 1.33913 1.38075 1.19719 0.85145 1.19488 1.22182 0.90425 1.26038 1.03538 0.95134 0.96437 1.69678 1.34740 1.22131 1.29514 0.84866 0.76926 0.78324 0.78164 1.19884 1.19397 1.19615 1.25597 0.93125 0.98751 0.94637 1.77126 1.25005 0.97812 1.14240 0.92807 0.92576 0.88109 0.85619 0.88337 0.78264 0.89630 0.87977 0.90873 0.87003 0.91320 0.94104 0.91025 0.92709 0.91048 0.83692 0.91050 0.88102 0.76904 0.91258 0.75202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 10.09 71.98 0.73 -0.26 16 2 C 0.11 0.78 7.21 86.38 0.62 1.40 16 3 N -0.36 -5.26 3.65 -346.29 -1.26 -6.52 16 4 C 0.13 2.14 11.25 84.28 0.95 3.09 16 5 C -0.32 -6.25 6.04 -20.15 -0.12 -6.38 16 6 C 0.59 14.17 7.67 86.66 0.66 14.83 16 7 O -0.59 -19.26 16.47 -4.02 -0.07 -19.33 16 8 N -0.61 -10.91 2.87 -850.68 -2.44 -13.36 16 9 C 0.06 0.53 8.55 127.77 1.09 1.62 16 10 C 0.12 2.21 5.39 86.38 0.47 2.67 16 11 C -0.12 -2.69 5.80 30.59 0.18 -2.51 16 12 C 0.07 1.60 5.69 86.30 0.49 2.09 16 13 N -0.69 -23.12 6.12 -517.93 -3.17 -26.29 16 14 C 0.07 2.35 6.17 85.56 0.53 2.88 16 15 C 0.44 21.51 7.82 87.66 0.69 22.20 16 16 O -0.63 -36.02 15.78 -3.05 -0.05 -36.06 16 17 N -0.57 -30.12 5.29 -306.98 -1.62 -31.75 16 18 C -0.34 -19.52 9.68 84.04 0.81 -18.70 16 19 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 21 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 22 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 C 0.07 1.01 9.91 85.65 0.85 1.86 16 27 N -0.32 -5.69 12.34 -56.27 -0.69 -6.38 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.13 0.21 8.06 -2.39 -0.02 0.19 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.20 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.09 0.46 6.31 -2.39 -0.02 0.45 16 35 H 0.10 0.48 7.80 -2.38 -0.02 0.46 16 36 H 0.07 0.60 6.64 -2.39 -0.02 0.59 16 37 H 0.11 1.24 7.92 -2.39 -0.02 1.22 16 38 H 0.07 1.52 7.39 -2.39 -0.02 1.50 16 39 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.34 11.82 8.43 -89.70 -0.76 11.06 16 44 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 46 H 0.40 19.73 7.90 -92.71 -0.73 18.99 16 47 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 48 H 0.23 1.96 4.17 -2.91 -0.01 1.95 16 Total: -1.00 -83.34 402.79 0.92 -82.42 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: -0.49 Total: 36.97 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 8.41 Total: 24.61 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -8.91 Total: -134.19 kcal Atomic # 8 Polarization: -55.28 SS G_CDS: -0.11 Total: -55.39 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -83.34 0.92 -82.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268785033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.399 kcal (2) G-P(sol) polarization free energy of solvation -83.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds