Wall clock time and date at job start Tue Mar 31 2020 20:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46490 * 109.47586 * 2 1 4 4 C 1.35031 * 124.88964 * 124.99622 * 3 2 1 5 5 C 1.35366 * 107.23082 * 180.22152 * 4 3 2 6 6 C 1.41498 * 105.50351 * 359.63314 * 5 4 3 7 7 C 1.47716 * 126.51932 * 180.09604 * 6 5 4 8 8 O 1.21562 * 119.99797 * 352.95778 * 7 6 5 9 9 N 1.34776 * 119.99661 * 172.95453 * 7 6 5 10 10 C 1.46500 * 120.00466 * 3.70594 * 9 7 6 11 11 C 1.46503 * 119.99705 * 183.70828 * 9 7 6 12 12 C 1.52999 * 109.47413 * 89.99936 * 11 9 7 13 13 C 1.52994 * 109.47189 * 180.02562 * 12 11 9 14 14 N 1.46902 * 109.47284 * 180.02562 * 13 12 11 15 15 C 1.46900 * 111.00122 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.47011 * 179.97438 * 15 14 13 17 17 O 1.21293 * 119.99823 * 359.97438 * 16 15 14 18 18 N 1.34770 * 119.99820 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00144 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99327 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00336 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00363 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99856 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47183 * 90.00595 * 23 21 19 25 25 H 1.48498 * 109.47319 * 210.00190 * 23 21 19 26 26 H 1.48499 * 109.47516 * 330.00045 * 23 21 19 27 27 N 1.28471 * 124.88192 * 304.97403 * 3 2 1 28 28 H 1.09002 * 109.46941 * 300.00643 * 1 2 3 29 29 H 1.08999 * 109.46777 * 59.99842 * 1 2 3 30 30 H 1.08994 * 109.47580 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46941 * 239.99357 * 2 1 3 32 32 H 1.09009 * 109.46906 * 120.00215 * 2 1 3 33 33 H 1.08002 * 126.38411 * 359.96033 * 4 3 2 34 34 H 1.07999 * 127.24813 * 179.75978 * 5 4 3 35 35 H 1.09001 * 109.47234 * 83.97543 * 10 9 7 36 36 H 1.08996 * 109.47294 * 203.98360 * 10 9 7 37 37 H 1.09009 * 109.46944 * 323.98175 * 10 9 7 38 38 H 1.09000 * 109.46859 * 210.00063 * 11 9 7 39 39 H 1.09005 * 109.46769 * 330.00143 * 11 9 7 40 40 H 1.09009 * 109.47056 * 300.00172 * 12 11 9 41 41 H 1.08996 * 109.47241 * 59.99802 * 12 11 9 42 42 H 1.09009 * 109.46938 * 299.99847 * 13 12 11 43 43 H 1.08996 * 109.47514 * 59.99573 * 13 12 11 44 44 H 1.00899 * 111.00162 * 56.03780 * 14 13 12 45 45 H 1.09000 * 109.47135 * 299.99542 * 15 14 13 46 46 H 1.08998 * 109.46805 * 59.99649 * 15 14 13 47 47 H 0.96996 * 120.00193 * 0.02562 * 18 16 15 48 48 H 0.97003 * 120.00414 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8748 1.8975 0.9073 5 6 3.0790 3.1934 0.5738 6 6 2.3012 3.4121 -0.5878 7 6 2.1863 4.6759 -1.3438 8 8 2.6935 5.6919 -0.9099 9 7 1.5193 4.7025 -2.5146 10 6 0.8393 3.4983 -2.9978 11 6 1.4743 5.9358 -3.3041 12 6 2.6590 5.9654 -4.2719 13 6 2.6124 7.2536 -5.0959 14 7 3.7495 7.2817 -6.0255 15 6 3.7370 8.5070 -6.8357 16 6 4.9158 8.5005 -7.7746 17 8 5.6904 7.5671 -7.7690 18 7 5.1098 9.5322 -8.6197 19 6 6.1825 9.5266 -9.4735 20 1 6.8722 8.6955 -9.4685 21 6 6.3829 10.5904 -10.3445 22 7 7.4107 10.5848 -11.1632 23 14 5.1903 12.0282 -10.3526 24 1 5.6489 13.0572 -9.3851 25 1 5.1357 12.6184 -11.7141 26 1 3.8382 11.5520 -9.9650 27 7 1.6938 2.2752 -0.8636 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.3118 1.3751 1.7456 34 1 3.7054 3.9092 1.0853 35 1 -0.1471 3.4291 -2.5391 36 1 0.7333 3.5509 -4.0814 37 1 1.4258 2.6186 -2.7324 38 1 0.5428 5.9718 -3.8689 39 1 1.5285 6.7963 -2.6372 40 1 3.5906 5.9293 -3.7070 41 1 2.6050 5.1049 -4.9387 42 1 1.6808 7.2900 -5.6608 43 1 2.6666 8.1138 -4.4288 44 1 3.7574 6.4608 -6.6121 45 1 2.8130 8.5519 -7.4123 46 1 3.7992 9.3762 -6.1809 47 1 4.4910 10.2791 -8.6234 48 1 7.5504 11.3274 -11.7715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268868562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:34 Heat of formation + Delta-G solvation = 25.878159 kcal Electronic energy + Delta-G solvation = -27838.602042 eV Core-core repulsion = 23738.251742 eV Total energy + Delta-G solvation = -4100.350300 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.04012 -39.78512 -38.43407 -36.55660 -35.41541 -35.05966 -33.88195 -32.12239 -31.59040 -30.97028 -30.32167 -27.69813 -26.82625 -25.61390 -24.35326 -23.25561 -22.19986 -21.67869 -21.33288 -19.55509 -19.30209 -18.27103 -17.81989 -17.03097 -16.61633 -16.45163 -15.85987 -15.67659 -15.44941 -14.96130 -14.87092 -14.47768 -14.18561 -14.08412 -13.96268 -13.69069 -13.34677 -13.19597 -13.08834 -12.93072 -12.84657 -12.74614 -12.53511 -12.29133 -12.04118 -12.01290 -11.76368 -11.70221 -11.38728 -11.11985 -10.91530 -10.71545 -10.55693 -10.23730 -9.93400 -9.61094 -9.52717 -9.42170 -8.84208 -8.52549 -8.14258 -8.05540 -6.26844 -3.78093 1.27815 1.80936 1.99391 2.78196 3.06138 3.10876 3.18356 3.20576 3.79868 3.81132 4.13640 4.18219 4.24115 4.27798 4.37528 4.50979 4.69429 4.86737 4.91236 4.97203 4.98406 5.11472 5.14021 5.23441 5.25909 5.30875 5.37275 5.41107 5.43026 5.46321 5.53361 5.64011 5.70066 5.71274 5.87823 5.98834 6.02637 6.11039 6.20432 6.36074 6.45238 7.12264 7.19162 7.51776 7.62965 7.66739 8.00398 8.19369 8.64800 8.99644 9.47229 9.88259 10.86394 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027908 B = 0.001544 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.058630 B =18129.391581 C =18225.402954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.286 5.286 4 C -0.018 4.018 5 C -0.178 4.178 6 C -0.014 4.014 7 C 0.601 3.399 8 O -0.528 6.528 9 N -0.604 5.604 10 C 0.077 3.923 11 C 0.117 3.883 12 C -0.132 4.132 13 C 0.064 3.936 14 N -0.669 5.669 15 C 0.048 3.952 16 C 0.451 3.549 17 O -0.564 6.564 18 N -0.592 5.592 19 C -0.305 4.305 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.883 5.883 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 N -0.257 5.257 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.181 0.819 34 H 0.162 0.838 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.026 0.974 43 H 0.073 0.927 44 H 0.349 0.651 45 H 0.044 0.956 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.926 -20.818 24.815 38.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.004 4.004 3 N -0.075 5.075 4 C -0.161 4.161 5 C -0.206 4.206 6 C -0.174 4.174 7 C 0.387 3.613 8 O -0.403 6.403 9 N -0.337 5.337 10 C -0.067 4.067 11 C -0.005 4.005 12 C -0.171 4.171 13 C -0.066 4.066 14 N -0.302 5.302 15 C -0.084 4.084 16 C 0.236 3.764 17 O -0.446 6.446 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 N -0.093 5.093 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.198 0.802 34 H 0.180 0.820 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.092 0.908 44 H 0.169 0.831 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.347 -21.174 24.581 37.774 hybrid contribution -1.034 1.264 -0.244 1.651 sum -20.380 -19.910 24.337 37.471 Atomic orbital electron populations 1.22074 0.93038 1.03453 1.03937 1.22017 0.96721 0.76793 1.04871 1.45779 1.32334 1.10505 1.18835 1.22889 0.99224 0.95405 0.98577 1.21795 1.04543 0.96101 0.98138 1.21936 1.02956 0.93064 0.99416 1.16987 0.78203 0.85965 0.80105 1.90811 1.47519 1.33374 1.68565 1.47660 1.52300 1.13000 1.20731 1.22096 0.97551 0.87669 0.99341 1.21499 0.98500 0.86785 0.93751 1.21902 0.99496 0.97730 0.97981 1.21859 0.91504 0.98125 0.95150 1.60021 1.43149 1.04511 1.22487 1.21705 0.96766 0.94459 0.95514 1.19742 0.88270 0.84552 0.83811 1.90564 1.47495 1.35792 1.70740 1.42203 1.26245 1.19325 1.35359 1.19441 1.03042 1.07691 1.13160 0.86309 1.25030 0.96950 0.97893 0.96298 1.69623 1.28023 1.32244 1.22381 0.86663 0.80893 0.83115 0.78653 1.19589 1.20234 1.19536 1.73633 1.22522 0.98129 1.15045 0.91857 0.90738 0.90188 0.88780 0.87875 0.80164 0.82002 0.92771 0.91379 0.88815 0.90398 0.89397 0.90331 0.91856 0.95547 0.90817 0.83124 0.93818 0.89422 0.79686 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.42 10.02 37.16 0.37 -0.04 16 2 C 0.12 0.30 7.12 -4.05 -0.03 0.27 16 3 N -0.29 -1.89 3.41 -61.33 -0.21 -2.10 16 4 C -0.02 -0.12 11.40 -17.17 -0.20 -0.31 16 5 C -0.18 -1.69 10.81 -39.36 -0.43 -2.12 16 6 C -0.01 -0.16 6.81 -82.76 -0.56 -0.72 16 7 C 0.60 7.92 7.68 -12.39 -0.10 7.82 16 8 O -0.53 -8.61 16.49 5.31 0.09 -8.52 16 9 N -0.60 -6.57 2.87 -182.74 -0.53 -7.10 16 10 C 0.08 0.62 9.62 59.85 0.58 1.20 16 11 C 0.12 1.21 5.41 -4.04 -0.02 1.18 16 12 C -0.13 -1.56 5.80 -26.73 -0.16 -1.72 16 13 C 0.06 0.80 5.69 -3.83 -0.02 0.78 16 14 N -0.67 -11.16 6.13 -115.06 -0.70 -11.86 16 15 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 16 C 0.45 10.66 7.82 -10.99 -0.09 10.57 16 17 O -0.56 -15.76 15.78 5.55 0.09 -15.67 16 18 N -0.59 -14.55 5.09 -10.96 -0.06 -14.61 16 19 C -0.30 -8.84 10.16 -14.93 -0.15 -9.00 16 20 H 0.12 3.93 7.39 -52.49 -0.39 3.55 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -26.24 13.96 55.50 0.77 -25.46 16 23 Si 0.88 19.77 27.73 -169.99 -4.71 15.06 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 27 N -0.26 -2.35 8.21 33.42 0.27 -2.08 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 30 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.10 0.00 8.04 -51.92 -0.42 -0.42 16 33 H 0.18 0.46 8.06 -52.49 -0.42 0.04 16 34 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.46 8.03 -51.93 -0.42 0.04 16 37 H 0.09 0.81 5.38 -51.92 -0.28 0.53 16 38 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 39 H 0.09 1.00 7.37 -51.93 -0.38 0.62 16 40 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.03 0.29 8.14 -51.92 -0.42 -0.13 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.35 5.95 8.43 -39.29 -0.33 5.61 16 45 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.37 7.98 5.76 -40.82 -0.24 7.75 16 48 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 402.80 15.07 6.07 6.07 Total: -1.00 -37.96 402.80 -7.37 -45.33 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -7.53 Total: 11.16 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -0.92 Total: 9.79 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -0.45 Total: -63.21 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.18 Total: -24.19 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.71 Total: 15.06 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.96 -7.37 -45.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268868562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.212 kcal (2) G-P(sol) polarization free energy of solvation -37.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds