Wall clock time and date at job start Tue Mar 31 2020 20:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46490 * 109.47586 * 2 1 4 4 C 1.35031 * 124.88964 * 124.99622 * 3 2 1 5 5 C 1.35366 * 107.23082 * 180.22152 * 4 3 2 6 6 C 1.41498 * 105.50351 * 359.63314 * 5 4 3 7 7 C 1.47716 * 126.51932 * 180.09604 * 6 5 4 8 8 O 1.21562 * 119.99797 * 352.95778 * 7 6 5 9 9 N 1.34776 * 119.99661 * 172.95453 * 7 6 5 10 10 C 1.46500 * 120.00466 * 3.70594 * 9 7 6 11 11 C 1.46503 * 119.99705 * 183.70828 * 9 7 6 12 12 C 1.52999 * 109.47413 * 89.99936 * 11 9 7 13 13 C 1.52994 * 109.47189 * 180.02562 * 12 11 9 14 14 N 1.46902 * 109.47284 * 180.02562 * 13 12 11 15 15 C 1.46900 * 111.00122 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.47011 * 179.97438 * 15 14 13 17 17 O 1.21293 * 119.99823 * 359.97438 * 16 15 14 18 18 N 1.34770 * 119.99820 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00144 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99327 * 359.97438 * 19 18 16 21 21 C 1.38943 * 120.00336 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00363 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99856 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47183 * 90.00595 * 23 21 19 25 25 H 1.48498 * 109.47319 * 210.00190 * 23 21 19 26 26 H 1.48499 * 109.47516 * 330.00045 * 23 21 19 27 27 N 1.28471 * 124.88192 * 304.97403 * 3 2 1 28 28 H 1.09002 * 109.46941 * 300.00643 * 1 2 3 29 29 H 1.08999 * 109.46777 * 59.99842 * 1 2 3 30 30 H 1.08994 * 109.47580 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46941 * 239.99357 * 2 1 3 32 32 H 1.09009 * 109.46906 * 120.00215 * 2 1 3 33 33 H 1.08002 * 126.38411 * 359.96033 * 4 3 2 34 34 H 1.07999 * 127.24813 * 179.75978 * 5 4 3 35 35 H 1.09001 * 109.47234 * 83.97543 * 10 9 7 36 36 H 1.08996 * 109.47294 * 203.98360 * 10 9 7 37 37 H 1.09009 * 109.46944 * 323.98175 * 10 9 7 38 38 H 1.09000 * 109.46859 * 210.00063 * 11 9 7 39 39 H 1.09005 * 109.46769 * 330.00143 * 11 9 7 40 40 H 1.09009 * 109.47056 * 300.00172 * 12 11 9 41 41 H 1.08996 * 109.47241 * 59.99802 * 12 11 9 42 42 H 1.09009 * 109.46938 * 299.99847 * 13 12 11 43 43 H 1.08996 * 109.47514 * 59.99573 * 13 12 11 44 44 H 1.00899 * 111.00162 * 56.03780 * 14 13 12 45 45 H 1.09000 * 109.47135 * 299.99542 * 15 14 13 46 46 H 1.08998 * 109.46805 * 59.99649 * 15 14 13 47 47 H 0.96996 * 120.00193 * 0.02562 * 18 16 15 48 48 H 0.97003 * 120.00414 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8748 1.8975 0.9073 5 6 3.0790 3.1934 0.5738 6 6 2.3012 3.4121 -0.5878 7 6 2.1863 4.6759 -1.3438 8 8 2.6935 5.6919 -0.9099 9 7 1.5193 4.7025 -2.5146 10 6 0.8393 3.4983 -2.9978 11 6 1.4743 5.9358 -3.3041 12 6 2.6590 5.9654 -4.2719 13 6 2.6124 7.2536 -5.0959 14 7 3.7495 7.2817 -6.0255 15 6 3.7370 8.5070 -6.8357 16 6 4.9158 8.5005 -7.7746 17 8 5.6904 7.5671 -7.7690 18 7 5.1098 9.5322 -8.6197 19 6 6.1825 9.5266 -9.4735 20 1 6.8722 8.6955 -9.4685 21 6 6.3829 10.5904 -10.3445 22 7 7.4107 10.5848 -11.1632 23 14 5.1903 12.0282 -10.3526 24 1 5.6489 13.0572 -9.3851 25 1 5.1357 12.6184 -11.7141 26 1 3.8382 11.5520 -9.9650 27 7 1.6938 2.2752 -0.8636 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.3118 1.3751 1.7456 34 1 3.7054 3.9092 1.0853 35 1 -0.1471 3.4291 -2.5391 36 1 0.7333 3.5509 -4.0814 37 1 1.4258 2.6186 -2.7324 38 1 0.5428 5.9718 -3.8689 39 1 1.5285 6.7963 -2.6372 40 1 3.5906 5.9293 -3.7070 41 1 2.6050 5.1049 -4.9387 42 1 1.6808 7.2900 -5.6608 43 1 2.6666 8.1138 -4.4288 44 1 3.7574 6.4608 -6.6121 45 1 2.8130 8.5519 -7.4123 46 1 3.7992 9.3762 -6.1809 47 1 4.4910 10.2791 -8.6234 48 1 7.5504 11.3274 -11.7715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268868562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:33 Heat of formation + Delta-G solvation = -4.160824 kcal Electronic energy + Delta-G solvation = -27839.904630 eV Core-core repulsion = 23738.251742 eV Total energy + Delta-G solvation = -4101.652888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.63696 -40.70429 -40.30179 -37.67514 -36.54852 -35.90946 -35.45948 -33.77722 -33.06396 -31.63397 -30.86445 -28.95743 -27.70546 -26.83777 -25.48936 -24.33384 -22.97457 -22.42905 -22.02779 -21.28838 -20.34938 -20.20681 -18.43668 -17.88541 -17.72484 -17.27250 -17.21123 -16.86792 -16.71148 -16.21089 -15.74186 -15.64883 -15.29355 -15.11266 -14.90156 -14.79204 -14.56320 -14.34756 -14.14340 -14.06088 -13.92377 -13.46111 -13.31520 -13.28960 -12.99239 -12.95906 -12.91843 -12.73651 -12.45335 -12.40659 -12.22580 -11.97279 -11.69440 -11.59423 -11.52101 -11.18599 -10.46284 -10.25674 -10.21249 -10.07735 -9.67307 -9.31444 -8.41811 -6.03145 0.52474 1.19900 1.30413 1.36359 1.45013 1.54013 1.94449 2.01555 2.23210 2.33329 2.74232 3.14370 3.27125 3.42672 3.76944 3.97315 3.99386 4.07879 4.09796 4.16363 4.23686 4.31421 4.39469 4.39922 4.43080 4.52398 4.56363 4.63546 4.68859 4.73537 4.78121 4.81520 4.82945 4.90397 5.01531 5.15505 5.19838 5.25889 5.37321 5.52290 5.58612 5.90075 5.93180 6.06385 6.27732 6.39497 6.59382 6.84967 6.87061 7.12075 7.38722 7.95580 8.75926 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027908 B = 0.001544 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.058630 B =18129.391581 C =18225.402954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 N -0.280 5.280 4 C 0.002 3.998 5 C -0.211 4.211 6 C -0.050 4.050 7 C 0.591 3.409 8 O -0.576 6.576 9 N -0.603 5.603 10 C 0.078 3.922 11 C 0.120 3.880 12 C -0.122 4.122 13 C 0.069 3.931 14 N -0.695 5.695 15 C 0.063 3.937 16 C 0.447 3.553 17 O -0.617 6.617 18 N -0.590 5.590 19 C -0.332 4.332 20 H 0.053 0.947 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.967 3.033 24 H -0.258 1.258 25 H -0.273 1.273 26 H -0.230 1.230 27 N -0.258 5.258 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.138 0.862 33 H 0.224 0.776 34 H 0.156 0.844 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.344 0.656 45 H 0.082 0.918 46 H 0.112 0.888 47 H 0.391 0.609 48 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.657 -21.129 25.906 40.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.069 5.069 4 C -0.141 4.141 5 C -0.239 4.239 6 C -0.208 4.208 7 C 0.379 3.621 8 O -0.454 6.454 9 N -0.334 5.334 10 C -0.065 4.065 11 C -0.003 4.003 12 C -0.161 4.161 13 C -0.060 4.060 14 N -0.328 5.328 15 C -0.069 4.069 16 C 0.235 3.765 17 O -0.501 6.501 18 N -0.231 5.231 19 C -0.461 4.461 20 H 0.072 0.928 21 C -0.213 4.213 22 N -0.575 5.575 23 Si 0.786 3.214 24 H -0.183 1.183 25 H -0.198 1.198 26 H -0.153 1.153 27 N -0.096 5.096 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.156 0.844 33 H 0.241 0.759 34 H 0.173 0.827 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.130 0.870 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.163 0.837 45 H 0.100 0.900 46 H 0.130 0.870 47 H 0.226 0.774 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.131 -21.517 25.670 40.706 hybrid contribution 0.195 1.127 -0.549 1.269 sum -22.936 -20.390 25.121 39.659 Atomic orbital electron populations 1.22053 0.92973 1.04529 1.02607 1.22475 0.96801 0.74751 1.07142 1.46285 1.31396 1.11370 1.17831 1.23436 0.97702 0.94258 0.98702 1.21978 1.05555 0.97856 0.98482 1.21852 1.05054 0.93237 1.00610 1.17410 0.77792 0.86230 0.80704 1.90760 1.49669 1.35055 1.69925 1.47804 1.51559 1.13998 1.20041 1.22209 0.97507 0.86325 1.00425 1.21521 0.99177 0.86280 0.93289 1.21776 0.98476 0.97994 0.97816 1.21892 0.91318 0.98288 0.94531 1.60005 1.45912 1.04024 1.22831 1.21631 0.94662 0.95744 0.94890 1.21035 0.89108 0.83008 0.83394 1.90541 1.49833 1.37693 1.72058 1.42015 1.25554 1.20531 1.35028 1.19021 1.04341 1.06926 1.15833 0.92841 1.26134 0.99180 1.01306 0.94690 1.69806 1.30530 1.33858 1.23273 0.85341 0.79301 0.77611 0.79103 1.18259 1.19847 1.15301 1.73576 1.22398 0.97894 1.15749 0.92706 0.92505 0.87906 0.87798 0.84371 0.75908 0.82679 0.91744 0.89514 0.89393 0.86965 0.90789 0.94065 0.91274 0.92363 0.90516 0.83717 0.90002 0.86992 0.77371 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.46 10.02 71.98 0.72 0.26 16 2 C 0.11 0.24 7.12 86.38 0.61 0.86 16 3 N -0.28 -3.21 3.41 -347.96 -1.19 -4.40 16 4 C 0.00 0.02 11.40 83.54 0.95 0.97 16 5 C -0.21 -4.12 10.81 22.41 0.24 -3.88 16 6 C -0.05 -1.17 6.81 42.46 0.29 -0.88 16 7 C 0.59 16.45 7.68 86.75 0.67 17.12 16 8 O -0.58 -20.23 16.49 -3.91 -0.06 -20.29 16 9 N -0.60 -13.10 2.87 -850.33 -2.44 -15.54 16 10 C 0.08 1.18 9.62 127.77 1.23 2.41 16 11 C 0.12 2.35 5.41 86.38 0.47 2.82 16 12 C -0.12 -2.81 5.80 30.59 0.18 -2.63 16 13 C 0.07 1.57 5.69 86.30 0.49 2.06 16 14 N -0.69 -22.28 6.13 -517.92 -3.17 -25.45 16 15 C 0.06 2.03 6.17 85.56 0.53 2.56 16 16 C 0.45 21.10 7.82 87.66 0.69 21.79 16 17 O -0.62 -35.85 15.78 -3.07 -0.05 -35.90 16 18 N -0.59 -28.73 5.09 -306.99 -1.56 -30.29 16 19 C -0.33 -20.01 10.16 84.04 0.85 -19.16 16 20 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 21 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 22 N -0.93 -57.30 13.96 21.66 0.30 -56.99 16 23 Si 0.97 39.48 27.73 68.60 1.90 41.38 16 24 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.23 -7.85 6.52 99.48 0.65 -7.21 16 27 N -0.26 -4.61 8.21 -48.17 -0.40 -5.01 16 28 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.06 0.38 8.08 -2.39 -0.02 0.36 16 30 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.14 -0.61 8.04 -2.38 -0.02 -0.63 16 33 H 0.22 0.31 8.06 -2.91 -0.02 0.29 16 34 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.98 8.03 -2.39 -0.02 0.96 16 37 H 0.09 1.48 5.38 -2.38 -0.01 1.47 16 38 H 0.11 1.44 8.07 -2.39 -0.02 1.42 16 39 H 0.07 1.68 7.37 -2.38 -0.02 1.67 16 40 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.34 11.53 8.43 -89.69 -0.76 10.78 16 45 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 47 H 0.39 15.66 5.76 -92.71 -0.53 15.12 16 48 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -92.07 402.80 1.35 -90.72 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: -0.37 Total: 37.84 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 8.38 Total: 23.94 kcal Atomic # 7 Polarization: -129.23 SS G_CDS: -8.46 Total: -137.69 kcal Atomic # 8 Polarization: -56.08 SS G_CDS: -0.11 Total: -56.20 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.90 Total: 41.38 kcal Total: -92.07 1.35 -90.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268868562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.557 kcal (2) G-P(sol) polarization free energy of solvation -92.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds