Wall clock time and date at job start Tue Mar 31 2020 20:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.46787 * 2 1 4 4 N 1.28445 * 125.18772 * 274.71740 * 3 2 1 5 5 C 1.30862 * 110.92811 * 180.02562 * 4 3 2 6 6 C 1.39678 * 107.85790 * 359.76424 * 5 4 3 7 7 C 1.36600 * 125.19392 * 94.76801 * 3 2 1 8 8 C 1.47158 * 126.88053 * 359.93457 * 7 3 2 9 9 O 1.21625 * 120.00288 * 349.66408 * 8 7 3 10 10 N 1.34778 * 119.99832 * 169.93547 * 8 7 3 11 11 C 1.46504 * 120.00104 * 359.96385 * 10 8 7 12 12 C 1.46501 * 119.99986 * 179.97438 * 10 8 7 13 13 H 1.08993 * 109.47316 * 359.97438 * 12 10 8 14 14 C 1.53009 * 109.46881 * 239.99859 * 12 10 8 15 15 C 1.52996 * 109.47300 * 120.00271 * 12 10 8 16 16 N 1.46904 * 109.47056 * 304.99711 * 15 12 10 17 17 C 1.46896 * 111.00051 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.46973 * 179.97438 * 17 16 15 19 19 O 1.21293 * 119.99964 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00063 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00126 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99676 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99862 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99554 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00029 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47014 * 89.99970 * 25 23 21 27 27 H 1.48498 * 109.46870 * 210.00069 * 25 23 21 28 28 H 1.48503 * 109.47242 * 329.99735 * 25 23 21 29 29 H 1.09005 * 109.46774 * 295.01402 * 1 2 3 30 30 H 1.09001 * 109.47218 * 55.01250 * 1 2 3 31 31 H 1.08994 * 109.46745 * 175.01476 * 1 2 3 32 32 H 1.08999 * 109.47073 * 240.00194 * 2 1 3 33 33 H 1.08994 * 109.47053 * 119.99268 * 2 1 3 34 34 H 1.07999 * 126.06856 * 180.02562 * 5 4 3 35 35 H 1.07998 * 127.31690 * 180.27572 * 6 5 4 36 36 H 1.08997 * 109.47251 * 83.21420 * 11 10 8 37 37 H 1.08998 * 109.46977 * 203.22433 * 11 10 8 38 38 H 1.09003 * 109.46914 * 323.22230 * 11 10 8 39 39 H 1.09003 * 109.46941 * 300.00092 * 14 12 10 40 40 H 1.09000 * 109.46524 * 60.00033 * 14 12 10 41 41 H 1.08997 * 109.47098 * 179.97438 * 14 12 10 42 42 H 1.08996 * 109.47241 * 64.99635 * 15 12 10 43 43 H 1.09001 * 109.47219 * 184.99621 * 15 12 10 44 44 H 1.00898 * 110.99695 * 56.04731 * 16 15 12 45 45 H 1.08999 * 109.47119 * 299.99905 * 17 16 15 46 46 H 1.09007 * 109.47151 * 60.00092 * 17 16 15 47 47 H 0.97002 * 120.00150 * 0.02562 * 20 18 17 48 48 H 0.96997 * 119.99338 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1836 2.1079 -1.0462 5 6 2.6318 3.2947 -0.7250 6 6 2.7643 3.3408 0.6647 7 6 2.3682 2.0926 1.1124 8 6 2.3257 1.6273 2.5079 9 8 1.7764 0.5774 2.7824 10 7 2.8907 2.3671 3.4824 11 6 3.5479 3.6343 3.1525 12 6 2.8480 1.9041 4.8717 13 1 2.3222 0.9507 4.9209 14 6 2.1138 2.9358 5.7307 15 6 4.2749 1.7279 5.3947 16 7 5.0167 0.8290 4.5004 17 6 6.3941 0.6355 4.9726 18 6 7.1220 -0.2906 4.0326 19 8 6.5497 -0.7443 3.0642 20 7 8.4092 -0.6138 4.2673 21 6 9.0716 -1.4559 3.4118 22 1 8.5619 -1.8598 2.5496 23 6 10.3985 -1.7895 3.6542 24 7 11.0332 -2.5970 2.8344 25 14 11.2797 -1.0913 5.1460 26 1 11.0977 -2.0061 6.3014 27 1 12.7276 -0.9541 4.8463 28 1 10.7141 0.2416 5.4761 29 1 -0.3633 0.4346 0.9313 30 1 -0.3634 0.5893 -0.8419 31 1 -0.3632 -1.0237 -0.0893 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 2.8551 4.0974 -1.4121 35 1 3.1054 4.1730 1.2626 36 1 2.8010 4.4256 3.0906 37 1 4.2740 3.8796 3.9276 38 1 4.0578 3.5402 2.1937 39 1 2.6393 3.8895 5.6815 40 1 1.0972 3.0614 5.3580 41 1 2.0816 2.5912 6.7642 42 1 4.7717 2.6974 5.4290 43 1 4.2444 1.2996 6.3966 44 1 5.0042 1.1719 3.5515 45 1 6.9059 1.5974 5.0044 46 1 6.3779 0.1994 5.9715 47 1 8.8671 -0.2507 5.0416 48 1 11.9593 -2.8302 3.0038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270948710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:32 Heat of formation + Delta-G solvation = 39.229668 kcal Electronic energy + Delta-G solvation = -30022.840920 eV Core-core repulsion = 25923.069584 eV Total energy + Delta-G solvation = -4099.771335 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.66693 -40.00098 -38.45002 -37.02858 -35.10017 -34.35441 -33.84888 -32.51619 -31.64394 -30.25482 -29.89899 -27.78290 -27.43669 -25.10709 -24.29936 -23.50669 -22.95732 -21.98369 -20.38468 -19.47074 -19.31271 -18.34007 -17.51560 -16.96225 -16.51066 -16.05901 -15.92027 -15.48415 -15.13070 -14.87872 -14.81623 -14.44927 -14.20592 -14.04760 -14.01353 -13.34229 -13.27409 -13.23784 -13.02450 -12.82597 -12.72199 -12.57126 -12.28989 -12.22482 -11.93640 -11.89240 -11.77278 -11.59725 -11.36535 -11.19831 -11.05194 -10.70003 -10.60099 -10.03407 -9.97527 -9.57165 -9.30285 -9.10883 -8.92060 -8.55103 -8.18998 -8.12720 -6.30739 -3.82147 1.20373 2.21351 2.54472 2.89413 3.01457 3.06457 3.12453 3.14370 3.74277 3.99832 4.10181 4.25747 4.44456 4.73755 4.78665 4.81493 4.86718 4.90445 5.00060 5.02560 5.06224 5.18511 5.18915 5.21778 5.30424 5.33484 5.42263 5.46847 5.50301 5.56502 5.56822 5.61348 5.73034 5.77462 5.81086 5.89782 5.92128 5.97604 6.30865 6.40877 6.66635 7.06923 7.09861 7.54702 7.58852 7.91352 8.05332 8.14961 8.60326 8.95508 9.42687 9.83421 10.82506 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.002992 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.350789 B = 9357.455439 C =10545.528916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.110 3.890 3 N -0.250 5.250 4 N -0.277 5.277 5 C -0.008 4.008 6 C -0.211 4.211 7 C -0.030 4.030 8 C 0.595 3.405 9 O -0.528 6.528 10 N -0.594 5.594 11 C 0.052 3.948 12 C 0.140 3.860 13 H 0.113 0.887 14 C -0.158 4.158 15 C 0.049 3.951 16 N -0.664 5.664 17 C 0.048 3.952 18 C 0.449 3.551 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.881 3.119 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.185 0.815 35 H 0.176 0.824 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.030 0.970 43 H 0.085 0.915 44 H 0.349 0.651 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.406 16.814 3.272 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.010 4.010 3 N -0.038 5.038 4 N -0.110 5.110 5 C -0.183 4.183 6 C -0.240 4.240 7 C -0.159 4.159 8 C 0.382 3.618 9 O -0.404 6.404 10 N -0.328 5.328 11 C -0.090 4.090 12 C 0.037 3.963 13 H 0.131 0.869 14 C -0.217 4.217 15 C -0.082 4.082 16 N -0.297 5.297 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.444 6.444 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.136 0.864 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.202 0.798 35 H 0.193 0.807 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.103 0.897 44 H 0.169 0.831 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.486 14.413 2.085 24.327 hybrid contribution 1.756 1.959 1.567 3.062 sum -17.731 16.372 3.652 24.408 Atomic orbital electron populations 1.22060 0.93485 1.03397 1.02906 1.22232 0.96077 0.76420 1.06265 1.45858 1.43702 1.12357 1.01854 1.73187 1.18806 1.05061 1.13956 1.23601 1.04327 0.95246 0.95168 1.22970 1.07653 0.97565 0.95787 1.21344 1.10474 0.94151 0.89914 1.16872 0.78544 0.83374 0.83009 1.90790 1.44291 1.22457 1.82893 1.47441 1.56145 1.22115 1.07085 1.22553 0.97826 0.85272 1.03373 1.21234 0.96373 0.99701 0.78996 0.86878 1.22106 1.00650 0.98928 1.00005 1.22362 0.93261 0.94756 0.97793 1.59976 1.13015 1.50631 1.06084 1.21714 0.89094 0.98214 0.99432 1.19714 0.82510 0.86113 0.88183 1.90579 1.66577 1.56407 1.30844 1.42200 1.10755 1.44437 1.25660 1.19431 0.94608 1.21977 1.07317 0.86351 1.25041 0.96337 0.96992 0.97818 1.69627 1.11687 1.34273 1.36574 0.86658 0.80261 0.79257 0.83109 1.19597 1.20202 1.19569 0.91643 0.92014 0.90105 0.88376 0.86266 0.79839 0.80727 0.91817 0.90744 0.88923 0.92256 0.91992 0.90991 0.95171 0.89674 0.83052 0.93929 0.89399 0.79726 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 10.24 37.16 0.38 -1.24 16 2 C 0.11 1.35 6.56 -4.04 -0.03 1.32 16 3 N -0.25 -3.45 3.35 -57.14 -0.19 -3.64 16 4 N -0.28 -3.77 11.90 30.59 0.36 -3.40 16 5 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 6 C -0.21 -2.23 8.85 -38.99 -0.35 -2.57 16 7 C -0.03 -0.40 6.79 -82.06 -0.56 -0.96 16 8 C 0.59 8.27 7.63 -12.64 -0.10 8.17 16 9 O -0.53 -8.73 14.09 5.26 0.07 -8.65 16 10 N -0.59 -6.48 1.83 -175.30 -0.32 -6.80 16 11 C 0.05 0.40 7.72 59.85 0.46 0.86 16 12 C 0.14 1.46 2.94 -67.93 -0.20 1.26 16 13 H 0.11 1.47 6.90 -51.93 -0.36 1.12 16 14 C -0.16 -1.14 9.19 37.16 0.34 -0.80 16 15 C 0.05 0.53 5.00 -3.82 -0.02 0.51 16 16 N -0.66 -10.53 6.12 -115.06 -0.70 -11.24 16 17 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 18 C 0.45 10.40 7.82 -10.99 -0.09 10.32 16 19 O -0.56 -15.60 15.78 5.55 0.09 -15.51 16 20 N -0.59 -14.24 5.09 -10.96 -0.06 -14.29 16 21 C -0.30 -8.74 10.16 -14.93 -0.15 -8.89 16 22 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.99 13.96 55.50 0.77 -25.22 16 25 Si 0.88 19.43 27.74 -169.99 -4.71 14.72 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.12 1.67 6.30 -51.93 -0.33 1.34 16 34 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.18 1.25 4.65 -52.49 -0.24 1.00 16 36 H 0.06 0.36 7.60 -51.93 -0.39 -0.04 16 37 H 0.07 0.49 6.54 -51.93 -0.34 0.15 16 38 H 0.09 0.75 4.97 -51.93 -0.26 0.49 16 39 H 0.06 0.36 7.67 -51.93 -0.40 -0.04 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.03 0.28 6.87 -51.93 -0.36 -0.08 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.35 6.03 7.56 -39.29 -0.30 5.74 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.37 7.77 5.76 -40.82 -0.24 7.54 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -36.69 389.03 -6.45 -43.14 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -6.99 Total: 15.54 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -0.63 Total: 9.50 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -0.13 Total: -64.60 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.16 Total: -24.16 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.69 -6.45 -43.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270948710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.373 kcal (2) G-P(sol) polarization free energy of solvation -36.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds