Wall clock time and date at job start Tue Mar 31 2020 20:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.46787 * 2 1 4 4 N 1.28445 * 125.18772 * 274.71740 * 3 2 1 5 5 C 1.30862 * 110.92811 * 180.02562 * 4 3 2 6 6 C 1.39678 * 107.85790 * 359.76424 * 5 4 3 7 7 C 1.36600 * 125.19392 * 94.76801 * 3 2 1 8 8 C 1.47158 * 126.88053 * 359.93457 * 7 3 2 9 9 O 1.21625 * 120.00288 * 349.66408 * 8 7 3 10 10 N 1.34778 * 119.99832 * 169.93547 * 8 7 3 11 11 C 1.46504 * 120.00104 * 359.96385 * 10 8 7 12 12 C 1.46501 * 119.99986 * 179.97438 * 10 8 7 13 13 H 1.08993 * 109.47316 * 359.97438 * 12 10 8 14 14 C 1.53009 * 109.46881 * 239.99859 * 12 10 8 15 15 C 1.52996 * 109.47300 * 120.00271 * 12 10 8 16 16 N 1.46904 * 109.47056 * 304.99711 * 15 12 10 17 17 C 1.46896 * 111.00051 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.46973 * 179.97438 * 17 16 15 19 19 O 1.21293 * 119.99964 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00063 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00126 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99676 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99862 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99554 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00029 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47014 * 89.99970 * 25 23 21 27 27 H 1.48498 * 109.46870 * 210.00069 * 25 23 21 28 28 H 1.48503 * 109.47242 * 329.99735 * 25 23 21 29 29 H 1.09005 * 109.46774 * 295.01402 * 1 2 3 30 30 H 1.09001 * 109.47218 * 55.01250 * 1 2 3 31 31 H 1.08994 * 109.46745 * 175.01476 * 1 2 3 32 32 H 1.08999 * 109.47073 * 240.00194 * 2 1 3 33 33 H 1.08994 * 109.47053 * 119.99268 * 2 1 3 34 34 H 1.07999 * 126.06856 * 180.02562 * 5 4 3 35 35 H 1.07998 * 127.31690 * 180.27572 * 6 5 4 36 36 H 1.08997 * 109.47251 * 83.21420 * 11 10 8 37 37 H 1.08998 * 109.46977 * 203.22433 * 11 10 8 38 38 H 1.09003 * 109.46914 * 323.22230 * 11 10 8 39 39 H 1.09003 * 109.46941 * 300.00092 * 14 12 10 40 40 H 1.09000 * 109.46524 * 60.00033 * 14 12 10 41 41 H 1.08997 * 109.47098 * 179.97438 * 14 12 10 42 42 H 1.08996 * 109.47241 * 64.99635 * 15 12 10 43 43 H 1.09001 * 109.47219 * 184.99621 * 15 12 10 44 44 H 1.00898 * 110.99695 * 56.04731 * 16 15 12 45 45 H 1.08999 * 109.47119 * 299.99905 * 17 16 15 46 46 H 1.09007 * 109.47151 * 60.00092 * 17 16 15 47 47 H 0.97002 * 120.00150 * 0.02562 * 20 18 17 48 48 H 0.96997 * 119.99338 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1836 2.1079 -1.0462 5 6 2.6318 3.2947 -0.7250 6 6 2.7643 3.3408 0.6647 7 6 2.3682 2.0926 1.1124 8 6 2.3257 1.6273 2.5079 9 8 1.7764 0.5774 2.7824 10 7 2.8907 2.3671 3.4824 11 6 3.5479 3.6343 3.1525 12 6 2.8480 1.9041 4.8717 13 1 2.3222 0.9507 4.9209 14 6 2.1138 2.9358 5.7307 15 6 4.2749 1.7279 5.3947 16 7 5.0167 0.8290 4.5004 17 6 6.3941 0.6355 4.9726 18 6 7.1220 -0.2906 4.0326 19 8 6.5497 -0.7443 3.0642 20 7 8.4092 -0.6138 4.2673 21 6 9.0716 -1.4559 3.4118 22 1 8.5619 -1.8598 2.5496 23 6 10.3985 -1.7895 3.6542 24 7 11.0332 -2.5970 2.8344 25 14 11.2797 -1.0913 5.1460 26 1 11.0977 -2.0061 6.3014 27 1 12.7276 -0.9541 4.8463 28 1 10.7141 0.2416 5.4761 29 1 -0.3633 0.4346 0.9313 30 1 -0.3634 0.5893 -0.8419 31 1 -0.3632 -1.0237 -0.0893 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 2.8551 4.0974 -1.4121 35 1 3.1054 4.1730 1.2626 36 1 2.8010 4.4256 3.0906 37 1 4.2740 3.8796 3.9276 38 1 4.0578 3.5402 2.1937 39 1 2.6393 3.8895 5.6815 40 1 1.0972 3.0614 5.3580 41 1 2.0816 2.5912 6.7642 42 1 4.7717 2.6974 5.4290 43 1 4.2444 1.2996 6.3966 44 1 5.0042 1.1719 3.5515 45 1 6.9059 1.5974 5.0044 46 1 6.3779 0.1994 5.9715 47 1 8.8671 -0.2507 5.0416 48 1 11.9593 -2.8302 3.0038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270948710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:31 Heat of formation + Delta-G solvation = 9.918201 kcal Electronic energy + Delta-G solvation = -30024.111960 eV Core-core repulsion = 25923.069584 eV Total energy + Delta-G solvation = -4101.042376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.58401 -40.94733 -40.25776 -38.07268 -36.31178 -35.83498 -35.23407 -33.79058 -33.40612 -31.12518 -30.79269 -29.11259 -28.15649 -26.63539 -25.26914 -24.63694 -24.09253 -22.86441 -21.42124 -21.16041 -20.39321 -20.17481 -18.43721 -17.91687 -17.88247 -17.30892 -17.01186 -16.76009 -16.49191 -16.15129 -15.77182 -15.59400 -15.49014 -15.24949 -14.93010 -14.88674 -14.46844 -14.25629 -14.08259 -14.05174 -13.93848 -13.64811 -13.29048 -13.15565 -13.08396 -13.00318 -12.82800 -12.62988 -12.47257 -12.42753 -12.29479 -11.98500 -11.86384 -11.56630 -11.53514 -11.05228 -10.49358 -10.28122 -10.27208 -9.98917 -9.72069 -9.27194 -8.43107 -6.04775 0.25503 1.28809 1.32451 1.35492 1.44333 1.67573 1.93561 2.02904 2.17410 2.22225 2.70981 3.12986 3.30584 3.43398 3.54021 3.92648 3.96071 4.05697 4.12316 4.17715 4.18914 4.21286 4.26407 4.32144 4.41376 4.49933 4.54627 4.64797 4.66312 4.72173 4.73716 4.78612 4.82685 4.84240 4.93651 5.03296 5.13034 5.30646 5.50403 5.53327 5.60488 5.74759 5.88368 6.05166 6.20938 6.33510 6.57988 6.86002 6.97632 7.12188 7.37341 7.95159 8.74888 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.002992 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.350789 B = 9357.455439 C =10545.528916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.106 3.894 3 N -0.268 5.268 4 N -0.306 5.306 5 C -0.010 4.010 6 C -0.194 4.194 7 C -0.059 4.059 8 C 0.583 3.417 9 O -0.571 6.571 10 N -0.587 5.587 11 C 0.043 3.957 12 C 0.138 3.862 13 H 0.077 0.923 14 C -0.147 4.147 15 C 0.052 3.948 16 N -0.692 5.692 17 C 0.064 3.936 18 C 0.444 3.556 19 O -0.619 6.619 20 N -0.588 5.588 21 C -0.331 4.331 22 H 0.050 0.950 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.969 3.031 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.228 1.228 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.219 0.781 35 H 0.212 0.788 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.337 0.663 45 H 0.082 0.918 46 H 0.117 0.883 47 H 0.391 0.609 48 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.676 21.034 6.628 28.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 N -0.057 5.057 4 N -0.138 5.138 5 C -0.186 4.186 6 C -0.222 4.222 7 C -0.187 4.187 8 C 0.371 3.629 9 O -0.451 6.451 10 N -0.319 5.319 11 C -0.098 4.098 12 C 0.035 3.965 13 H 0.095 0.905 14 C -0.205 4.205 15 C -0.077 4.077 16 N -0.324 5.324 17 C -0.068 4.068 18 C 0.233 3.767 19 O -0.504 6.504 20 N -0.230 5.230 21 C -0.461 4.461 22 H 0.068 0.932 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.788 3.212 26 H -0.182 1.182 27 H -0.199 1.199 28 H -0.151 1.151 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.235 0.765 35 H 0.228 0.772 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.118 0.882 44 H 0.156 0.844 45 H 0.100 0.900 46 H 0.135 0.865 47 H 0.227 0.773 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.765 18.687 5.483 27.044 hybrid contribution 1.489 0.625 0.417 1.667 sum -17.276 19.311 5.899 26.574 Atomic orbital electron populations 1.21959 0.91879 1.04495 1.02141 1.22204 0.97429 0.76538 1.05175 1.45978 1.44741 1.12697 1.02248 1.73151 1.19984 1.06265 1.14440 1.24307 1.02962 0.95117 0.96184 1.23465 1.05623 0.97249 0.95846 1.21650 1.11894 0.95435 0.89733 1.17172 0.78636 0.83261 0.83855 1.90756 1.46488 1.24344 1.83539 1.47561 1.55028 1.22638 1.06712 1.22814 0.98885 0.84267 1.03807 1.21274 0.96415 0.99446 0.79345 0.90497 1.22026 0.99941 0.98733 0.99797 1.22487 0.92621 0.95392 0.97207 1.59955 1.13030 1.53120 1.06340 1.21647 0.89017 0.98077 0.98094 1.21118 0.82016 0.85498 0.88108 1.90562 1.67759 1.58406 1.33661 1.42002 1.11238 1.44106 1.25685 1.18984 0.95608 1.24338 1.07134 0.93226 1.26183 0.96551 0.96686 1.02057 1.69818 1.12472 1.35858 1.39445 0.85312 0.78179 0.80367 0.77293 1.18176 1.19946 1.15073 0.93059 0.91663 0.88240 0.87892 0.88778 0.76450 0.77153 0.88930 0.88745 0.89505 0.89962 0.92675 0.89572 0.91949 0.88157 0.84430 0.90023 0.86515 0.77326 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 10.24 71.98 0.74 -2.48 16 2 C 0.11 2.90 6.56 86.38 0.57 3.47 16 3 N -0.27 -7.83 3.35 -334.69 -1.12 -8.95 16 4 N -0.31 -8.45 11.90 -57.14 -0.68 -9.13 16 5 C -0.01 -0.21 12.03 85.19 1.02 0.81 16 6 C -0.19 -3.80 8.85 22.66 0.20 -3.60 16 7 C -0.06 -1.61 6.79 40.78 0.28 -1.33 16 8 C 0.58 16.83 7.63 86.59 0.66 17.49 16 9 O -0.57 -20.52 14.09 -4.11 -0.06 -20.58 16 10 N -0.59 -12.11 1.83 -826.77 -1.52 -13.63 16 11 C 0.04 0.51 7.72 127.77 0.99 1.50 16 12 C 0.14 2.66 2.94 44.99 0.13 2.79 16 13 H 0.08 2.06 6.90 -2.39 -0.02 2.05 16 14 C -0.15 -1.64 9.19 71.99 0.66 -0.98 16 15 C 0.05 0.96 5.00 86.30 0.43 1.39 16 16 N -0.69 -20.83 6.12 -517.94 -3.17 -24.00 16 17 C 0.06 1.92 6.17 85.56 0.53 2.45 16 18 C 0.44 20.58 7.82 87.66 0.69 21.27 16 19 O -0.62 -36.10 15.78 -3.07 -0.05 -36.15 16 20 N -0.59 -28.07 5.09 -306.98 -1.56 -29.63 16 21 C -0.33 -19.82 10.16 84.04 0.85 -18.96 16 22 H 0.05 3.57 7.39 -2.91 -0.02 3.55 16 23 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 24 N -0.94 -57.15 13.96 21.66 0.30 -56.85 16 25 Si 0.97 38.65 27.74 68.60 1.90 40.55 16 26 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 27 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 28 H -0.23 -7.47 6.52 99.48 0.65 -6.82 16 29 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.09 3.02 6.30 -2.39 -0.02 3.00 16 34 H 0.22 2.72 8.06 -2.91 -0.02 2.69 16 35 H 0.21 2.30 4.65 -2.91 -0.01 2.29 16 36 H 0.09 0.61 7.60 -2.39 -0.02 0.59 16 37 H 0.09 0.78 6.54 -2.39 -0.02 0.76 16 38 H 0.09 1.17 4.97 -2.39 -0.01 1.15 16 39 H 0.08 0.57 7.67 -2.39 -0.02 0.55 16 40 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 0.80 6.87 -2.39 -0.02 0.78 16 43 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.34 11.50 7.56 -89.70 -0.68 10.82 16 45 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.12 2.90 8.14 -2.38 -0.02 2.88 16 47 H 0.39 15.14 5.76 -92.71 -0.53 14.61 16 48 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -90.81 389.03 2.00 -88.81 By element: Atomic # 1 Polarization: 46.44 SS G_CDS: -0.27 Total: 46.17 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: 8.21 Total: 23.38 kcal Atomic # 7 Polarization: -134.44 SS G_CDS: -7.74 Total: -142.19 kcal Atomic # 8 Polarization: -56.62 SS G_CDS: -0.11 Total: -56.73 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 1.90 Total: 40.55 kcal Total: -90.81 2.00 -88.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270948710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.731 kcal (2) G-P(sol) polarization free energy of solvation -90.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds