Wall clock time and date at job start Tue Mar 31 2020 20:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.46912 * 2 1 4 4 N 1.28440 * 125.18823 * 264.95756 * 3 2 1 5 5 C 1.30859 * 110.92540 * 179.97438 * 4 3 2 6 6 C 1.39668 * 107.86355 * 359.77423 * 5 4 3 7 7 C 1.36596 * 125.19080 * 84.92598 * 3 2 1 8 8 C 1.47162 * 126.88305 * 359.97438 * 7 3 2 9 9 O 1.21631 * 120.00540 * 9.61574 * 8 7 3 10 10 N 1.34775 * 120.00158 * 189.61208 * 8 7 3 11 11 C 1.46504 * 119.99727 * 0.46275 * 10 8 7 12 12 C 1.46496 * 120.00324 * 180.45918 * 10 8 7 13 13 H 1.08991 * 109.47334 * 0.02562 * 12 10 8 14 14 C 1.53004 * 109.47166 * 120.00289 * 12 10 8 15 15 C 1.53000 * 109.47208 * 240.00034 * 12 10 8 16 16 N 1.46899 * 109.47006 * 55.00074 * 15 12 10 17 17 C 1.46903 * 111.00147 * 179.97438 * 16 15 12 18 18 C 1.50700 * 109.47230 * 179.97438 * 17 16 15 19 19 O 1.21294 * 119.99904 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00276 * 180.02562 * 18 17 16 21 21 C 1.37089 * 120.00290 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00096 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00188 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99935 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00206 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47008 * 89.99859 * 25 23 21 27 27 H 1.48497 * 109.46997 * 209.99731 * 25 23 21 28 28 H 1.48497 * 109.46956 * 329.99922 * 25 23 21 29 29 H 1.09002 * 109.47006 * 184.99327 * 1 2 3 30 30 H 1.08996 * 109.47442 * 304.99769 * 1 2 3 31 31 H 1.09005 * 109.47011 * 65.00016 * 1 2 3 32 32 H 1.08992 * 109.47415 * 240.00157 * 2 1 3 33 33 H 1.09000 * 109.47279 * 119.99510 * 2 1 3 34 34 H 1.08000 * 126.06903 * 180.02562 * 5 4 3 35 35 H 1.08010 * 127.32384 * 180.27117 * 6 5 4 36 36 H 1.09003 * 109.46990 * 276.35493 * 11 10 8 37 37 H 1.08995 * 109.47166 * 36.35392 * 11 10 8 38 38 H 1.08994 * 109.47427 * 156.35740 * 11 10 8 39 39 H 1.09003 * 109.47030 * 180.02562 * 14 12 10 40 40 H 1.09000 * 109.46940 * 300.00051 * 14 12 10 41 41 H 1.08998 * 109.47241 * 60.00402 * 14 12 10 42 42 H 1.08998 * 109.47695 * 295.00284 * 15 12 10 43 43 H 1.08999 * 109.47206 * 174.99906 * 15 12 10 44 44 H 1.00903 * 111.00140 * 303.95592 * 16 15 12 45 45 H 1.08998 * 109.47319 * 299.99725 * 17 16 15 46 46 H 1.09003 * 109.46775 * 60.00174 * 17 16 15 47 47 H 0.97005 * 120.00086 * 359.97438 * 20 18 17 48 48 H 0.96994 * 119.99619 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3520 2.0484 -1.0456 5 6 2.7475 3.2537 -0.7245 6 6 2.6559 3.3791 0.6635 7 6 2.1876 2.1564 1.1119 8 6 1.9194 1.7708 2.5066 9 8 1.6708 0.6120 2.7802 10 7 1.9492 2.7016 3.4808 11 6 2.2387 4.0992 3.1499 12 6 1.6922 2.3160 4.8705 13 1 1.4984 1.2447 4.9204 14 6 2.9138 2.6534 5.7277 15 6 0.4746 3.0799 5.3949 16 7 -0.6692 2.8503 4.5021 17 6 -1.8593 3.5696 4.9757 18 6 -3.0093 3.3111 4.0366 19 8 -2.8529 2.5975 3.0683 20 7 -4.2114 3.8729 4.2725 21 6 -5.2576 3.6373 3.4185 22 1 -5.1184 3.0019 2.5564 23 6 -6.4969 4.2169 3.6615 24 7 -6.6662 4.9905 4.7104 25 14 -7.9223 3.8966 2.4974 26 1 -8.6717 2.6974 2.9508 27 1 -8.8287 5.0728 2.4893 28 1 -7.3996 3.6648 1.1270 29 1 -0.3633 -1.0238 0.0894 30 1 -0.3634 0.5894 0.8418 31 1 -0.3633 0.4343 -0.9314 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.0812 4.0175 -1.4113 35 1 2.9000 4.2457 1.2603 36 1 3.3177 4.2433 3.0941 37 1 1.7891 4.3455 2.1881 38 1 1.8249 4.7484 3.9214 39 1 2.7226 2.3661 6.7617 40 1 3.7812 2.1092 5.3542 41 1 3.1079 3.7248 5.6780 42 1 0.7010 4.1456 5.4285 43 1 0.2294 2.7288 6.3972 44 1 -0.4444 3.1080 3.5528 45 1 -2.1206 3.2215 5.9750 46 1 -1.6493 4.6387 5.0067 47 1 -4.3366 4.4433 5.0471 48 1 -7.5314 5.3947 4.8801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270948711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:34 Heat of formation + Delta-G solvation = 32.787832 kcal Electronic energy + Delta-G solvation = -30181.648928 eV Core-core repulsion = 26081.598254 eV Total energy + Delta-G solvation = -4100.050674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.65702 -39.95932 -38.25875 -36.96433 -35.02843 -34.29237 -33.78809 -32.46706 -31.19782 -30.23339 -29.78444 -27.60655 -27.40866 -25.07654 -24.25712 -23.49942 -22.97586 -21.98879 -20.34399 -19.45128 -19.16680 -17.88728 -17.44198 -16.95110 -16.43226 -16.16980 -15.70114 -15.47993 -15.09618 -14.74306 -14.55217 -14.39145 -14.31062 -13.97315 -13.87614 -13.52642 -13.28260 -13.16860 -13.00585 -12.65773 -12.59327 -12.53244 -12.11505 -11.91065 -11.80945 -11.63672 -11.61031 -11.42504 -11.26943 -11.09005 -10.96571 -10.68498 -10.39168 -10.21397 -10.00239 -9.50265 -9.27840 -9.09400 -8.88022 -8.41952 -8.03979 -7.94855 -6.41342 -3.81900 1.21817 2.23226 2.55516 2.92778 3.15671 3.18224 3.26678 3.32723 3.91565 4.04781 4.21695 4.35310 4.44796 4.82305 4.85620 4.92619 4.96159 4.98502 5.07433 5.10170 5.15489 5.22256 5.24744 5.26087 5.35837 5.39709 5.47642 5.53021 5.54763 5.63985 5.68140 5.77137 5.82895 5.85556 5.96999 6.00589 6.24250 6.26585 6.34504 6.42873 6.68409 7.13051 7.20841 7.55716 7.64770 7.93458 8.06952 8.07405 8.62177 9.18709 9.54940 10.06820 10.76499 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010879 B = 0.003178 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.264608 B = 8807.658618 C =10339.211171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.250 5.250 4 N -0.279 5.279 5 C -0.009 4.009 6 C -0.212 4.212 7 C -0.030 4.030 8 C 0.595 3.405 9 O -0.529 6.529 10 N -0.594 5.594 11 C 0.051 3.949 12 C 0.140 3.860 13 H 0.113 0.887 14 C -0.158 4.158 15 C 0.049 3.951 16 N -0.664 5.664 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.581 6.581 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.184 0.816 35 H 0.177 0.823 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.030 0.970 43 H 0.085 0.915 44 H 0.348 0.652 45 H 0.086 0.914 46 H 0.041 0.959 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.857 -0.481 -1.038 21.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.039 5.039 4 N -0.111 5.111 5 C -0.184 4.184 6 C -0.240 4.240 7 C -0.159 4.159 8 C 0.382 3.618 9 O -0.405 6.405 10 N -0.327 5.327 11 C -0.091 4.091 12 C 0.037 3.963 13 H 0.131 0.869 14 C -0.217 4.217 15 C -0.082 4.082 16 N -0.297 5.297 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.465 6.465 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.132 0.868 34 H 0.201 0.799 35 H 0.194 0.806 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.103 0.897 44 H 0.168 0.832 45 H 0.105 0.895 46 H 0.059 0.941 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 21.241 -2.949 -2.094 21.546 hybrid contribution -0.583 1.965 0.418 2.092 sum 20.657 -0.984 -1.676 20.749 Atomic orbital electron populations 1.22101 0.92690 1.03942 1.03627 1.22217 0.96677 0.76311 1.05433 1.45901 1.43651 1.12431 1.01873 1.73188 1.16716 1.07296 1.13925 1.23593 1.05049 0.94557 0.95220 1.23012 1.07495 0.97683 0.95823 1.21343 1.10979 0.93597 0.89944 1.16868 0.76829 0.85144 0.82975 1.90788 1.48580 1.18208 1.82909 1.47439 1.70007 1.08159 1.07097 1.22572 1.01136 0.82002 1.03410 1.21239 0.93660 1.02466 0.78936 0.86927 1.22107 0.97542 1.02009 1.00040 1.22354 0.90470 0.97499 0.97850 1.59986 1.02572 1.61155 1.05951 1.21681 0.91154 0.95883 0.99462 1.19813 0.84183 0.85232 0.88209 1.90533 1.83442 1.41118 1.31381 1.41852 1.08474 1.43837 1.25917 1.19694 0.88150 1.28118 1.06819 0.88003 1.25249 0.98872 0.96411 0.97369 1.69613 1.25344 1.32082 1.27364 0.85868 0.80394 0.77756 0.80349 1.20373 1.20920 1.19450 0.90027 0.90730 0.92007 0.88512 0.86807 0.79863 0.80632 0.91832 0.88885 0.90699 0.90979 0.92042 0.92247 0.95229 0.89715 0.83233 0.89549 0.94078 0.77500 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.11 1.39 6.48 -4.04 -0.03 1.36 16 3 N -0.25 -3.47 3.35 -57.14 -0.19 -3.66 16 4 N -0.28 -3.79 11.90 30.59 0.36 -3.43 16 5 C -0.01 -0.10 12.03 -17.43 -0.21 -0.31 16 6 C -0.21 -2.27 8.87 -38.99 -0.35 -2.61 16 7 C -0.03 -0.40 6.80 -82.06 -0.56 -0.96 16 8 C 0.59 8.41 7.65 -12.64 -0.10 8.31 16 9 O -0.53 -8.86 14.12 5.25 0.07 -8.78 16 10 N -0.59 -6.71 1.83 -175.31 -0.32 -7.03 16 11 C 0.05 0.41 7.73 59.85 0.46 0.88 16 12 C 0.14 1.53 2.94 -67.93 -0.20 1.33 16 13 H 0.11 1.52 6.90 -51.93 -0.36 1.16 16 14 C -0.16 -1.22 9.19 37.16 0.34 -0.88 16 15 C 0.05 0.57 5.00 -3.82 -0.02 0.55 16 16 N -0.66 -11.02 6.12 -115.06 -0.70 -11.72 16 17 C 0.05 0.91 6.17 -4.97 -0.03 0.87 16 18 C 0.44 10.59 7.82 -10.99 -0.09 10.50 16 19 O -0.58 -16.18 15.78 5.55 0.09 -16.10 16 20 N -0.56 -14.44 5.29 -10.97 -0.06 -14.50 16 21 C -0.30 -8.42 9.68 -14.94 -0.14 -8.57 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 24 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 25 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.11 1.43 6.44 -51.93 -0.33 1.09 16 34 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.18 1.30 4.62 -52.48 -0.24 1.06 16 36 H 0.06 0.38 7.64 -51.93 -0.40 -0.02 16 37 H 0.09 0.79 4.90 -51.93 -0.25 0.53 16 38 H 0.07 0.54 6.54 -51.93 -0.34 0.20 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 42 H 0.03 0.30 6.87 -51.93 -0.36 -0.06 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.35 6.23 7.56 -39.29 -0.30 5.93 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 392.23 15.07 5.91 5.91 Total: -1.00 -35.08 392.23 -6.80 -41.89 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -7.04 Total: 15.93 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -0.63 Total: 9.17 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: -0.19 Total: -64.28 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: 0.16 Total: -24.88 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.08 -6.80 -41.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270948711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.676 kcal (2) G-P(sol) polarization free energy of solvation -35.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds