Wall clock time and date at job start Tue Mar 31 2020 20:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.46912 * 2 1 4 4 N 1.28440 * 125.18823 * 264.95756 * 3 2 1 5 5 C 1.30859 * 110.92540 * 179.97438 * 4 3 2 6 6 C 1.39668 * 107.86355 * 359.77423 * 5 4 3 7 7 C 1.36596 * 125.19080 * 84.92598 * 3 2 1 8 8 C 1.47162 * 126.88305 * 359.97438 * 7 3 2 9 9 O 1.21631 * 120.00540 * 9.61574 * 8 7 3 10 10 N 1.34775 * 120.00158 * 189.61208 * 8 7 3 11 11 C 1.46504 * 119.99727 * 0.46275 * 10 8 7 12 12 C 1.46496 * 120.00324 * 180.45918 * 10 8 7 13 13 H 1.08991 * 109.47334 * 0.02562 * 12 10 8 14 14 C 1.53004 * 109.47166 * 120.00289 * 12 10 8 15 15 C 1.53000 * 109.47208 * 240.00034 * 12 10 8 16 16 N 1.46899 * 109.47006 * 55.00074 * 15 12 10 17 17 C 1.46903 * 111.00147 * 179.97438 * 16 15 12 18 18 C 1.50700 * 109.47230 * 179.97438 * 17 16 15 19 19 O 1.21294 * 119.99904 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00276 * 180.02562 * 18 17 16 21 21 C 1.37089 * 120.00290 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00096 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00188 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99935 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00206 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47008 * 89.99859 * 25 23 21 27 27 H 1.48497 * 109.46997 * 209.99731 * 25 23 21 28 28 H 1.48497 * 109.46956 * 329.99922 * 25 23 21 29 29 H 1.09002 * 109.47006 * 184.99327 * 1 2 3 30 30 H 1.08996 * 109.47442 * 304.99769 * 1 2 3 31 31 H 1.09005 * 109.47011 * 65.00016 * 1 2 3 32 32 H 1.08992 * 109.47415 * 240.00157 * 2 1 3 33 33 H 1.09000 * 109.47279 * 119.99510 * 2 1 3 34 34 H 1.08000 * 126.06903 * 180.02562 * 5 4 3 35 35 H 1.08010 * 127.32384 * 180.27117 * 6 5 4 36 36 H 1.09003 * 109.46990 * 276.35493 * 11 10 8 37 37 H 1.08995 * 109.47166 * 36.35392 * 11 10 8 38 38 H 1.08994 * 109.47427 * 156.35740 * 11 10 8 39 39 H 1.09003 * 109.47030 * 180.02562 * 14 12 10 40 40 H 1.09000 * 109.46940 * 300.00051 * 14 12 10 41 41 H 1.08998 * 109.47241 * 60.00402 * 14 12 10 42 42 H 1.08998 * 109.47695 * 295.00284 * 15 12 10 43 43 H 1.08999 * 109.47206 * 174.99906 * 15 12 10 44 44 H 1.00903 * 111.00140 * 303.95592 * 16 15 12 45 45 H 1.08998 * 109.47319 * 299.99725 * 17 16 15 46 46 H 1.09003 * 109.46775 * 60.00174 * 17 16 15 47 47 H 0.97005 * 120.00086 * 359.97438 * 20 18 17 48 48 H 0.96994 * 119.99619 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3520 2.0484 -1.0456 5 6 2.7475 3.2537 -0.7245 6 6 2.6559 3.3791 0.6635 7 6 2.1876 2.1564 1.1119 8 6 1.9194 1.7708 2.5066 9 8 1.6708 0.6120 2.7802 10 7 1.9492 2.7016 3.4808 11 6 2.2387 4.0992 3.1499 12 6 1.6922 2.3160 4.8705 13 1 1.4984 1.2447 4.9204 14 6 2.9138 2.6534 5.7277 15 6 0.4746 3.0799 5.3949 16 7 -0.6692 2.8503 4.5021 17 6 -1.8593 3.5696 4.9757 18 6 -3.0093 3.3111 4.0366 19 8 -2.8529 2.5975 3.0683 20 7 -4.2114 3.8729 4.2725 21 6 -5.2576 3.6373 3.4185 22 1 -5.1184 3.0019 2.5564 23 6 -6.4969 4.2169 3.6615 24 7 -6.6662 4.9905 4.7104 25 14 -7.9223 3.8966 2.4974 26 1 -8.6717 2.6974 2.9508 27 1 -8.8287 5.0728 2.4893 28 1 -7.3996 3.6648 1.1270 29 1 -0.3633 -1.0238 0.0894 30 1 -0.3634 0.5894 0.8418 31 1 -0.3633 0.4343 -0.9314 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.0812 4.0175 -1.4113 35 1 2.9000 4.2457 1.2603 36 1 3.3177 4.2433 3.0941 37 1 1.7891 4.3455 2.1881 38 1 1.8249 4.7484 3.9214 39 1 2.7226 2.3661 6.7617 40 1 3.7812 2.1092 5.3542 41 1 3.1079 3.7248 5.6780 42 1 0.7010 4.1456 5.4285 43 1 0.2294 2.7288 6.3972 44 1 -0.4444 3.1080 3.5528 45 1 -2.1206 3.2215 5.9750 46 1 -1.6493 4.6387 5.0067 47 1 -4.3366 4.4433 5.0471 48 1 -7.5314 5.3947 4.8801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270948711.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:34 Heat of formation + Delta-G solvation = 6.396273 kcal Electronic energy + Delta-G solvation = -30182.793352 eV Core-core repulsion = 26081.598254 eV Total energy + Delta-G solvation = -4101.195098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.57911 -40.93427 -40.11303 -38.05925 -36.29161 -35.79970 -35.22618 -33.49740 -33.21382 -31.12595 -30.77101 -28.98082 -28.17309 -26.71086 -25.29666 -24.70138 -24.10279 -22.87936 -21.36831 -20.99071 -20.31975 -19.91840 -18.40216 -17.92501 -17.89074 -17.29979 -16.89588 -16.69497 -16.39041 -16.18281 -15.91861 -15.69421 -15.44024 -15.23447 -15.02334 -14.90644 -14.36365 -14.09138 -14.04661 -13.97670 -13.59324 -13.55090 -13.29482 -13.16062 -13.11206 -12.98773 -12.81841 -12.61457 -12.48475 -12.42104 -12.32880 -12.14135 -11.87129 -11.55695 -11.53531 -11.04328 -10.39818 -10.26403 -10.03559 -9.98881 -9.72198 -9.27505 -8.49035 -5.97602 0.25390 1.32667 1.35455 1.39332 1.51841 1.68398 2.03011 2.03941 2.18510 2.27136 2.89650 3.18189 3.35388 3.50544 3.56592 3.92650 3.94693 4.05768 4.16572 4.17929 4.20424 4.23722 4.25691 4.34439 4.46681 4.49524 4.56431 4.60125 4.66138 4.70974 4.72639 4.78241 4.81872 4.83875 4.93078 5.06138 5.12082 5.29907 5.38344 5.52584 5.60129 5.75765 5.87426 6.09959 6.21748 6.34891 6.58459 6.98117 7.10780 7.12812 7.53929 8.10345 8.68360 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010879 B = 0.003178 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.264608 B = 8807.658618 C =10339.211171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.116 3.884 3 N -0.269 5.269 4 N -0.304 5.304 5 C -0.010 4.010 6 C -0.195 4.195 7 C -0.058 4.058 8 C 0.584 3.416 9 O -0.571 6.571 10 N -0.588 5.588 11 C 0.043 3.957 12 C 0.140 3.860 13 H 0.078 0.922 14 C -0.147 4.147 15 C 0.051 3.949 16 N -0.686 5.686 17 C 0.067 3.933 18 C 0.434 3.566 19 O -0.626 6.626 20 N -0.571 5.571 21 C -0.335 4.335 22 H 0.074 0.926 23 C -0.010 4.010 24 N -0.918 5.918 25 Si 0.990 3.010 26 H -0.271 1.271 27 H -0.267 1.267 28 H -0.275 1.275 29 H 0.097 0.903 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.219 0.781 35 H 0.211 0.789 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.337 0.663 45 H 0.106 0.894 46 H 0.071 0.929 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.079 1.764 -0.243 23.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.004 4.004 3 N -0.057 5.057 4 N -0.137 5.137 5 C -0.185 4.185 6 C -0.223 4.223 7 C -0.186 4.186 8 C 0.372 3.628 9 O -0.451 6.451 10 N -0.320 5.320 11 C -0.098 4.098 12 C 0.037 3.963 13 H 0.096 0.904 14 C -0.205 4.205 15 C -0.078 4.078 16 N -0.319 5.319 17 C -0.066 4.066 18 C 0.222 3.778 19 O -0.513 6.513 20 N -0.208 5.208 21 C -0.464 4.464 22 H 0.092 0.908 23 C -0.210 4.210 24 N -0.559 5.559 25 Si 0.814 3.186 26 H -0.197 1.197 27 H -0.192 1.192 28 H -0.200 1.200 29 H 0.116 0.884 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.236 0.764 35 H 0.228 0.772 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.156 0.844 45 H 0.124 0.876 46 H 0.089 0.911 47 H 0.231 0.769 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.482 -0.653 -1.242 22.526 hybrid contribution -0.928 1.313 0.191 1.619 sum 21.555 0.659 -1.051 21.590 Atomic orbital electron populations 1.21993 0.93942 1.04027 1.01398 1.22172 0.95492 0.76604 1.06094 1.46003 1.44658 1.12838 1.02189 1.73156 1.17647 1.08544 1.14334 1.24294 1.03775 0.94337 0.96134 1.23500 1.05408 0.97459 0.95968 1.21605 1.12393 0.94896 0.89712 1.17170 0.76690 0.85151 0.83829 1.90752 1.50782 1.19977 1.83557 1.47554 1.68670 1.09052 1.06708 1.22828 1.03198 0.80066 1.03737 1.21248 0.95094 1.00569 0.79415 0.90358 1.22027 0.95376 1.03310 0.99797 1.22484 0.88774 0.99337 0.97229 1.59966 1.03922 1.61772 1.06235 1.21542 0.89097 0.97835 0.98079 1.20979 0.85071 0.83485 0.88298 1.90509 1.84320 1.42793 1.33649 1.41900 1.08726 1.44356 1.25840 1.19614 0.89993 1.29483 1.07352 0.90796 1.25991 1.00553 0.95659 0.98756 1.69662 1.26280 1.31932 1.28017 0.84972 0.77387 0.78274 0.77970 1.19690 1.19172 1.20036 0.88443 0.95022 0.92237 0.86239 0.87622 0.76446 0.77222 0.88805 0.89367 0.89078 0.89661 0.92431 0.90068 0.92323 0.88504 0.84430 0.87604 0.91142 0.76873 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.52 10.24 71.98 0.74 -3.79 16 2 C 0.12 3.03 6.48 86.38 0.56 3.59 16 3 N -0.27 -7.66 3.35 -334.69 -1.12 -8.78 16 4 N -0.30 -8.21 11.90 -57.15 -0.68 -8.89 16 5 C -0.01 -0.20 12.03 85.18 1.02 0.82 16 6 C -0.20 -3.85 8.87 22.65 0.20 -3.65 16 7 C -0.06 -1.57 6.80 40.79 0.28 -1.30 16 8 C 0.58 17.06 7.65 86.59 0.66 17.72 16 9 O -0.57 -20.58 14.12 -4.13 -0.06 -20.63 16 10 N -0.59 -12.74 1.83 -826.79 -1.52 -14.25 16 11 C 0.04 0.56 7.73 127.77 0.99 1.55 16 12 C 0.14 2.90 2.94 44.99 0.13 3.03 16 13 H 0.08 2.19 6.90 -2.39 -0.02 2.18 16 14 C -0.15 -1.85 9.19 71.98 0.66 -1.19 16 15 C 0.05 1.08 5.00 86.30 0.43 1.51 16 16 N -0.69 -22.38 6.12 -517.93 -3.17 -25.55 16 17 C 0.07 2.29 6.17 85.56 0.53 2.81 16 18 C 0.43 21.24 7.82 87.66 0.69 21.92 16 19 O -0.63 -36.39 15.78 -3.07 -0.05 -36.44 16 20 N -0.57 -29.72 5.29 -306.99 -1.62 -31.34 16 21 C -0.33 -19.40 9.68 84.04 0.81 -18.59 16 22 H 0.07 4.62 7.16 -2.91 -0.02 4.60 16 23 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 24 N -0.92 -49.61 13.05 21.67 0.28 -49.33 16 25 Si 0.99 43.56 29.55 68.60 2.03 45.58 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 27 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 28 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 29 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.11 2.91 6.44 -2.39 -0.02 2.89 16 34 H 0.22 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.21 2.40 4.62 -2.91 -0.01 2.39 16 36 H 0.09 0.71 7.64 -2.39 -0.02 0.69 16 37 H 0.09 1.27 4.90 -2.39 -0.01 1.26 16 38 H 0.09 0.93 6.54 -2.39 -0.02 0.92 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.08 0.69 7.67 -2.39 -0.02 0.68 16 42 H 0.06 0.94 6.87 -2.39 -0.02 0.92 16 43 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.34 12.16 7.56 -89.69 -0.68 11.48 16 45 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 46 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.40 19.41 7.90 -92.70 -0.73 18.67 16 48 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -80.95 392.23 1.86 -79.09 By element: Atomic # 1 Polarization: 46.55 SS G_CDS: -0.40 Total: 46.14 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: 8.17 Total: 24.39 kcal Atomic # 7 Polarization: -130.32 SS G_CDS: -7.82 Total: -138.14 kcal Atomic # 8 Polarization: -56.97 SS G_CDS: -0.11 Total: -57.07 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -80.95 1.86 -79.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270948711.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.490 kcal (2) G-P(sol) polarization free energy of solvation -80.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds