Wall clock time and date at job start Tue Mar 31 2020 20:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99935 * 2 1 3 5 5 N 1.46905 * 109.47150 * 184.99676 * 4 2 1 6 6 C 1.46900 * 111.00154 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.46977 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00027 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99801 * 180.02562 * 7 6 5 10 10 C 1.37089 * 120.00278 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99666 * 359.97438 * 10 9 7 12 12 C 1.38955 * 120.00524 * 180.02562 * 10 9 7 13 13 N 1.31410 * 120.00044 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 119.99632 * 359.97438 * 12 10 9 15 15 H 1.48494 * 109.47468 * 90.00273 * 14 12 10 16 16 H 1.48501 * 109.47051 * 210.00381 * 14 12 10 17 17 H 1.48502 * 109.46909 * 329.99913 * 14 12 10 18 18 N 1.46506 * 109.47035 * 119.99770 * 2 1 3 19 19 C 1.46505 * 119.99873 * 60.00451 * 18 2 1 20 20 C 1.34775 * 119.99979 * 239.99713 * 18 2 1 21 21 O 1.21287 * 120.00123 * 0.02562 * 20 18 2 22 22 C 1.50696 * 119.99816 * 179.97438 * 20 18 2 23 23 C 1.53000 * 109.47210 * 180.02562 * 22 20 18 24 24 N 1.46496 * 109.47373 * 180.02562 * 23 22 20 25 25 C 1.36883 * 126.39548 * 90.00451 * 24 23 22 26 26 C 1.34675 * 106.81663 * 180.02562 * 25 24 23 27 27 N 1.34117 * 108.02140 * 359.97438 * 26 25 24 28 28 C 1.30509 * 109.25860 * 359.72648 * 27 26 25 29 29 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47059 * 299.99602 * 1 2 3 31 31 H 1.08992 * 109.47060 * 60.00086 * 1 2 3 32 32 H 1.08993 * 109.47322 * 304.99960 * 4 2 1 33 33 H 1.09004 * 109.46881 * 65.00322 * 4 2 1 34 34 H 1.00903 * 110.99958 * 303.95831 * 5 4 2 35 35 H 1.08996 * 109.46846 * 300.00213 * 6 5 4 36 36 H 1.08999 * 109.47196 * 60.00064 * 6 5 4 37 37 H 0.97009 * 119.99700 * 0.02562 * 9 7 6 38 38 H 0.96998 * 119.99370 * 179.97438 * 13 12 10 39 39 H 1.08999 * 109.46984 * 89.99607 * 19 18 2 40 40 H 1.08993 * 109.46873 * 209.99600 * 19 18 2 41 41 H 1.08995 * 109.46826 * 329.99614 * 19 18 2 42 42 H 1.08995 * 109.47420 * 300.00726 * 22 20 18 43 43 H 1.09004 * 109.47053 * 60.00896 * 22 20 18 44 44 H 1.08995 * 109.47333 * 300.00549 * 23 22 20 45 45 H 1.09004 * 109.46568 * 60.00369 * 23 22 20 46 46 H 1.07996 * 126.58974 * 359.96221 * 25 24 23 47 47 H 1.07998 * 125.98622 * 180.02562 * 26 25 24 48 48 H 1.07996 * 125.65304 * 180.28692 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8266 -1.1904 6 6 4.0305 -1.5148 -2.3767 7 6 5.5318 -1.6043 -2.2806 8 8 6.1067 -1.1400 -1.3189 9 7 6.2356 -2.1993 -3.2640 10 6 7.6013 -2.2812 -3.1764 11 1 8.1131 -1.8685 -2.3196 12 6 8.3271 -2.8942 -4.1905 13 7 9.6362 -2.9722 -4.1068 14 14 7.4418 -3.6072 -5.6728 15 1 7.3227 -2.5671 -6.7259 16 1 8.2123 -4.7612 -6.2017 17 1 6.0864 -4.0604 -5.2690 18 7 2.0184 -0.6906 1.1962 19 6 1.6645 -2.0932 1.4281 20 6 2.7932 -0.0356 2.0834 21 8 3.0859 1.1257 1.8916 22 6 3.2950 -0.7458 3.3141 23 6 4.1447 0.2160 4.1472 24 7 4.6330 -0.4746 5.3433 25 6 5.8036 -1.1751 5.4557 26 6 5.8577 -1.6436 6.7172 27 7 4.7508 -1.2397 7.3577 28 6 4.0154 -0.5337 6.5428 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6055 -1.7197 -1.2951 33 1 1.7517 -0.1582 -2.1369 34 1 3.9280 0.0827 -1.0823 35 1 3.6097 -2.5188 -2.4308 36 1 3.7559 -0.9570 -3.2720 37 1 5.7758 -2.5696 -4.0337 38 1 10.1427 -3.4004 -4.8145 39 1 2.4158 -2.7377 0.9717 40 1 1.6239 -2.2852 2.5002 41 1 0.6905 -2.3002 0.9847 42 1 2.4471 -1.0880 3.9073 43 1 3.9005 -1.6024 3.0178 44 1 4.9926 0.5585 3.5542 45 1 3.5389 1.0724 4.4435 46 1 6.5414 -1.3244 4.6813 47 1 6.6535 -2.2394 7.1392 48 1 3.0683 -0.0754 6.7864 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271052841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:01 Heat of formation + Delta-G solvation = -22.405508 kcal Electronic energy + Delta-G solvation = -29105.919789 eV Core-core repulsion = 25003.475752 eV Total energy + Delta-G solvation = -4102.444037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.95915 -41.08886 -40.28245 -38.05983 -36.21087 -35.76996 -35.57518 -33.77080 -32.95982 -31.11097 -30.24748 -29.10182 -27.75936 -26.63083 -25.80721 -24.42042 -22.38808 -22.25879 -21.64319 -21.29578 -20.36879 -19.89019 -18.84852 -17.93093 -17.66732 -17.19252 -16.93924 -16.79483 -16.56040 -15.97210 -15.83202 -15.39517 -15.32626 -15.02040 -14.87745 -14.77292 -14.59930 -14.40136 -14.21243 -14.06708 -13.97784 -13.71551 -13.54229 -13.26261 -13.14546 -12.95117 -12.88392 -12.76634 -12.53828 -12.43197 -12.34078 -11.99159 -11.75102 -11.53120 -11.01987 -10.89404 -10.56678 -10.46399 -10.26903 -9.56297 -9.47394 -9.31460 -8.43005 -6.04200 1.11685 1.28443 1.34293 1.43438 1.62265 1.74110 1.94362 2.20620 2.21625 2.23540 2.71383 3.13469 3.37431 3.56950 3.68911 3.73151 3.87493 3.89743 4.10578 4.12066 4.22805 4.24285 4.35097 4.38922 4.43755 4.44935 4.52482 4.61129 4.66215 4.72584 4.74930 4.77795 4.81905 4.84211 5.03740 5.11078 5.31325 5.33435 5.50698 5.64126 5.78918 5.88585 6.03924 6.27282 6.28711 6.44149 6.58040 6.86522 7.12037 7.20438 7.37998 7.95220 8.74838 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009540 B = 0.002767 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.196896 B =10115.313937 C =12477.825368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 H 0.073 0.927 4 C 0.051 3.949 5 N -0.680 5.680 6 C 0.064 3.936 7 C 0.447 3.553 8 O -0.615 6.615 9 N -0.591 5.591 10 C -0.329 4.329 11 H 0.052 0.948 12 C -0.016 4.016 13 N -0.935 5.935 14 Si 0.967 3.033 15 H -0.258 1.258 16 H -0.275 1.275 17 H -0.229 1.229 18 N -0.589 5.589 19 C 0.074 3.926 20 C 0.519 3.481 21 O -0.587 6.587 22 C -0.142 4.142 23 C 0.126 3.874 24 N -0.456 5.456 25 C -0.062 4.062 26 C -0.050 4.050 27 N -0.534 5.534 28 C 0.182 3.818 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.336 0.664 35 H 0.116 0.884 36 H 0.075 0.925 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.126 0.874 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.114 0.886 46 H 0.181 0.819 47 H 0.179 0.821 48 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.585 1.115 8.859 27.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.031 3.969 3 H 0.091 0.909 4 C -0.078 4.078 5 N -0.312 5.312 6 C -0.068 4.068 7 C 0.235 3.765 8 O -0.499 6.499 9 N -0.233 5.233 10 C -0.458 4.458 11 H 0.071 0.929 12 C -0.215 4.215 13 N -0.576 5.576 14 Si 0.786 3.214 15 H -0.182 1.182 16 H -0.200 1.200 17 H -0.152 1.152 18 N -0.320 5.320 19 C -0.068 4.068 20 C 0.308 3.692 21 O -0.468 6.468 22 C -0.182 4.182 23 C 0.003 3.997 24 N -0.138 5.138 25 C -0.195 4.195 26 C -0.197 4.197 27 N -0.253 5.253 28 C -0.100 4.100 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.134 0.866 36 H 0.092 0.908 37 H 0.225 0.775 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.144 0.856 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.132 0.868 46 H 0.198 0.802 47 H 0.196 0.804 48 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -25.120 1.262 10.385 27.212 hybrid contribution 0.977 0.426 -2.389 2.616 sum -24.144 1.688 7.996 25.489 Atomic orbital electron populations 1.22017 0.91753 1.03742 1.03148 1.21152 0.95540 0.96534 0.83690 0.90882 1.22480 0.86545 1.02049 0.96774 1.60045 1.05786 1.26108 1.39214 1.21622 0.89372 1.02338 0.93473 1.21053 0.90850 0.81533 0.83076 1.90552 1.72969 1.51892 1.34508 1.42031 1.06103 1.53963 1.21176 1.18981 0.81957 1.37576 1.07292 0.92946 1.26149 0.96198 0.97280 1.01856 1.69810 1.07558 1.44450 1.35778 0.85344 0.79757 0.78804 0.77468 1.18232 1.20036 1.15213 1.47649 1.49544 1.13202 1.21610 1.21953 1.01992 0.79881 1.02985 1.20561 0.77465 0.86321 0.84880 1.90689 1.59093 1.19002 1.78038 1.21894 1.02089 0.99559 0.94653 1.21561 0.99804 0.94577 0.83743 1.45678 1.16992 1.39494 1.11681 1.23091 0.92423 1.02864 1.01108 1.22597 0.98811 1.06114 0.92139 1.70273 1.06052 1.15645 1.33306 1.25651 1.01500 1.02004 0.80871 0.90249 0.92318 0.90076 0.88754 0.92676 0.84677 0.86563 0.90768 0.77457 0.91133 0.93151 0.89659 0.88613 0.85594 0.88555 0.89975 0.86786 0.80178 0.80357 0.74772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.17 71.98 0.66 -0.82 16 2 C 0.13 2.32 2.88 44.99 0.13 2.44 16 3 H 0.07 1.70 6.90 -2.38 -0.02 1.68 16 4 C 0.05 0.88 4.98 86.30 0.43 1.31 16 5 N -0.68 -18.85 5.85 -517.93 -3.03 -21.88 16 6 C 0.06 1.84 6.17 85.56 0.53 2.37 16 7 C 0.45 19.86 7.82 87.66 0.69 20.54 16 8 O -0.61 -34.13 15.78 -3.05 -0.05 -34.18 16 9 N -0.59 -27.49 5.09 -306.99 -1.56 -29.06 16 10 C -0.33 -19.24 10.16 84.04 0.85 -18.39 16 11 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 12 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 13 N -0.94 -56.46 13.96 21.66 0.30 -56.16 16 14 Si 0.97 38.23 27.74 68.60 1.90 40.14 16 15 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 16 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 17 H -0.23 -7.49 6.52 99.48 0.65 -6.84 16 18 N -0.59 -10.62 2.49 -822.58 -2.04 -12.66 16 19 C 0.07 0.88 9.40 127.77 1.20 2.08 16 20 C 0.52 11.77 7.67 87.66 0.67 12.45 16 21 O -0.59 -17.97 15.31 -3.05 -0.05 -18.01 16 22 C -0.14 -2.39 4.58 29.85 0.14 -2.25 16 23 C 0.13 2.33 5.44 86.38 0.47 2.80 16 24 N -0.46 -9.07 2.75 -529.07 -1.46 -10.53 16 25 C -0.06 -1.39 11.58 83.09 0.96 -0.42 16 26 C -0.05 -1.19 11.87 83.53 0.99 -0.20 16 27 N -0.53 -13.50 11.25 -200.31 -2.25 -15.75 16 28 C 0.18 3.51 12.56 180.26 2.26 5.78 16 29 H 0.08 0.52 6.66 -2.38 -0.02 0.50 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 1.28 7.84 -2.39 -0.02 1.27 16 33 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.34 11.24 8.43 -89.69 -0.76 10.48 16 35 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.39 14.83 5.76 -92.70 -0.53 14.30 16 38 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 0.70 6.44 -2.39 -0.02 0.69 16 41 H 0.10 0.66 6.43 -2.39 -0.02 0.64 16 42 H 0.13 1.36 7.40 -2.39 -0.02 1.34 16 43 H 0.10 1.84 8.11 -2.38 -0.02 1.82 16 44 H 0.08 1.91 8.10 -2.39 -0.02 1.89 16 45 H 0.11 1.81 8.10 -2.38 -0.02 1.79 16 46 H 0.18 3.70 8.06 -2.91 -0.02 3.68 16 47 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 48 H 0.24 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -87.04 399.62 1.85 -85.19 By element: Atomic # 1 Polarization: 46.00 SS G_CDS: -0.36 Total: 45.64 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: 10.45 Total: 27.26 kcal Atomic # 7 Polarization: -135.99 SS G_CDS: -10.04 Total: -146.03 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -0.09 Total: -52.19 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.14 kcal Total: -87.04 1.85 -85.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271052841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.785 kcal (2) G-P(sol) polarization free energy of solvation -87.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds