Wall clock time and date at job start Tue Mar 31 2020 20:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46846 * 2 1 4 4 C 1.52998 * 109.46636 * 119.99827 * 2 1 3 5 5 N 1.46905 * 109.46854 * 175.00156 * 4 2 1 6 6 C 1.46901 * 111.00227 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47306 * 180.02562 * 6 5 4 8 8 O 1.21295 * 120.00047 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00045 * 179.97438 * 7 6 5 10 10 C 1.37103 * 119.99694 * 179.97438 * 9 7 6 11 11 H 1.07990 * 120.00016 * 0.02562 * 10 9 7 12 12 C 1.38956 * 119.99484 * 179.97438 * 10 9 7 13 13 N 1.31408 * 119.99476 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00167 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.46932 * 89.99387 * 14 12 10 16 16 H 1.48496 * 109.47079 * 209.99714 * 14 12 10 17 17 H 1.48498 * 109.46864 * 329.99735 * 14 12 10 18 18 N 1.46496 * 109.47122 * 239.99535 * 2 1 3 19 19 C 1.46497 * 120.00352 * 299.99984 * 18 2 1 20 20 C 1.34776 * 119.99846 * 120.00406 * 18 2 1 21 21 O 1.21282 * 119.99940 * 359.97438 * 20 18 2 22 22 C 1.50698 * 120.00035 * 180.02562 * 20 18 2 23 23 C 1.53006 * 109.47184 * 179.97438 * 22 20 18 24 24 N 1.46504 * 109.46883 * 179.97438 * 23 22 20 25 25 C 1.36874 * 126.39943 * 90.00176 * 24 23 22 26 26 C 1.34669 * 106.81918 * 179.97438 * 25 24 23 27 27 N 1.34123 * 108.02125 * 0.02562 * 26 25 24 28 28 C 1.30508 * 109.25485 * 359.72427 * 27 26 25 29 29 H 1.08999 * 109.47218 * 60.00126 * 1 2 3 30 30 H 1.09005 * 109.47503 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47176 * 300.00431 * 1 2 3 32 32 H 1.09001 * 109.47158 * 294.99534 * 4 2 1 33 33 H 1.08996 * 109.47897 * 55.00065 * 4 2 1 34 34 H 1.00902 * 110.99818 * 56.04156 * 5 4 2 35 35 H 1.09004 * 109.46723 * 299.99450 * 6 5 4 36 36 H 1.08996 * 109.46966 * 59.99360 * 6 5 4 37 37 H 0.96993 * 120.00092 * 359.97438 * 9 7 6 38 38 H 0.97001 * 119.99601 * 180.02562 * 13 12 10 39 39 H 1.08996 * 109.47300 * 270.00198 * 19 18 2 40 40 H 1.09010 * 109.46976 * 30.00342 * 19 18 2 41 41 H 1.09007 * 109.47283 * 149.99894 * 19 18 2 42 42 H 1.09001 * 109.47612 * 59.99945 * 22 20 18 43 43 H 1.09001 * 109.47122 * 299.99777 * 22 20 18 44 44 H 1.09001 * 109.47002 * 299.99404 * 23 22 20 45 45 H 1.08993 * 109.46955 * 59.99842 * 23 22 20 46 46 H 1.08001 * 126.59311 * 359.95764 * 25 24 23 47 47 H 1.08000 * 125.99191 * 179.97438 * 26 25 24 48 48 H 1.07997 * 125.65225 * 180.29380 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5039 -0.8266 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5315 -1.6043 2.2809 8 8 6.1066 -1.1394 1.3195 9 7 6.2353 -2.2000 3.2640 10 6 7.6012 -2.2809 3.1769 11 1 8.1131 -1.8669 2.3209 12 6 8.3268 -2.8946 4.1907 13 7 9.6359 -2.9726 4.1070 14 14 7.4412 -3.6100 5.6717 15 1 7.0920 -5.0280 5.4023 16 1 8.3267 -3.5357 6.8614 17 1 6.2008 -2.8350 5.9286 18 7 2.0183 -0.6907 -1.1961 19 6 1.6644 -2.0932 -1.4279 20 6 2.7932 -0.0358 -2.0832 21 8 3.0859 1.1255 -1.8916 22 6 3.2951 -0.7460 -3.3139 23 6 4.1448 0.2157 -4.1470 24 7 4.6332 -0.4750 -5.3432 25 6 4.0043 -0.5403 -6.5571 26 6 4.7960 -1.2682 -7.3675 27 7 5.8786 -1.6378 -6.6673 28 6 5.7906 -1.1616 -5.4554 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7515 -0.1582 2.1370 33 1 1.6053 -1.7197 1.2953 34 1 3.9279 0.0826 1.0824 35 1 3.7556 -0.9587 3.2720 36 1 3.6093 -2.5198 2.4296 37 1 5.7755 -2.5715 4.0330 38 1 10.1424 -3.4013 4.8145 39 1 2.4157 -2.7377 -0.9715 40 1 0.6903 -2.3003 -0.9845 41 1 1.6238 -2.2853 -2.5001 42 1 2.4471 -1.0882 -3.9072 43 1 3.9005 -1.6027 -3.0176 44 1 3.5390 1.0721 -4.4435 45 1 4.9927 0.5583 -3.5540 46 1 3.0553 -0.0940 -6.8154 47 1 4.5943 -1.5123 -8.4000 48 1 6.5212 -1.2963 -4.6716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271052842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:04 Heat of formation + Delta-G solvation = 4.724737 kcal Electronic energy + Delta-G solvation = -29103.000725 eV Core-core repulsion = 25001.733144 eV Total energy + Delta-G solvation = -4101.267581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.12785 -40.24394 -38.51303 -37.10964 -34.92869 -34.83815 -33.88066 -32.16289 -31.66251 -30.31820 -29.42472 -27.83095 -27.09253 -25.28166 -24.79054 -23.13590 -21.58859 -21.42186 -20.83624 -19.48817 -19.15990 -18.33186 -18.05035 -16.89508 -16.51731 -16.18678 -15.86223 -15.52749 -15.08359 -14.96159 -14.75193 -14.30093 -14.22765 -13.98269 -13.84385 -13.77792 -13.39673 -13.29085 -13.10552 -12.96317 -12.86938 -12.66145 -12.49262 -12.31562 -12.22778 -12.12492 -11.74146 -11.69645 -11.56377 -11.18735 -11.04443 -10.62457 -10.10528 -10.00488 -10.00000 -9.70034 -9.59772 -8.81211 -8.63227 -8.58686 -8.22628 -8.17682 -6.33217 -3.84776 1.92639 2.46113 2.55479 2.96065 2.99489 3.04040 3.10358 3.12535 3.71003 3.98175 4.07916 4.33368 4.44549 4.47380 4.65800 4.68647 4.77844 4.83214 4.84358 4.90432 5.00721 5.06849 5.18936 5.19898 5.29715 5.30480 5.34890 5.37827 5.41778 5.50801 5.57404 5.58337 5.64837 5.74047 5.76250 5.85593 5.89588 6.16598 6.35922 6.62002 7.02814 7.05992 7.21976 7.50481 7.55941 7.99184 8.03796 8.12147 8.57353 8.92753 9.39972 9.80079 10.79936 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009535 B = 0.002770 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.705976 B =10106.588006 C =12469.990250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.101 0.899 4 C 0.048 3.952 5 N -0.663 5.663 6 C 0.049 3.951 7 C 0.449 3.551 8 O -0.563 6.563 9 N -0.591 5.591 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.270 1.270 18 N -0.591 5.591 19 C 0.077 3.923 20 C 0.529 3.471 21 O -0.544 6.544 22 C -0.153 4.153 23 C 0.120 3.880 24 N -0.458 5.458 25 C -0.062 4.062 26 C -0.033 4.033 27 N -0.498 5.498 28 C 0.188 3.812 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.352 0.648 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.370 0.630 38 H 0.274 0.726 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.171 0.829 47 H 0.167 0.833 48 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.786 3.083 -11.629 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.119 0.881 4 C -0.083 4.083 5 N -0.296 5.296 6 C -0.084 4.084 7 C 0.235 3.765 8 O -0.445 6.445 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.323 5.323 19 C -0.066 4.066 20 C 0.317 3.683 21 O -0.422 6.422 22 C -0.194 4.194 23 C -0.003 4.003 24 N -0.140 5.140 25 C -0.194 4.194 26 C -0.181 4.181 27 N -0.216 5.216 28 C -0.094 4.094 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.172 0.828 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.116 0.884 45 H 0.125 0.875 46 H 0.188 0.812 47 H 0.184 0.816 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -21.428 2.969 -12.649 25.060 hybrid contribution -1.390 0.268 2.466 2.844 sum -22.819 3.237 -10.182 25.196 Atomic orbital electron populations 1.22097 0.94586 1.02428 1.02647 1.21096 0.93521 0.98057 0.83956 0.88079 1.22361 0.89574 1.00518 0.95845 1.60009 1.03144 1.27014 1.39432 1.21698 0.95081 0.99907 0.91708 1.19697 0.87926 0.84120 0.84773 1.90572 1.70977 1.50353 1.32569 1.42212 1.07883 1.53106 1.19827 1.19426 0.79543 1.36024 1.08385 0.86301 1.25045 0.95438 0.97659 0.98029 1.69622 1.05071 1.43244 1.34118 0.86669 0.79601 0.79991 0.83085 1.19602 1.20168 1.19594 1.47490 1.50452 1.12283 1.22057 1.21783 1.01364 0.81915 1.01520 1.20114 0.77610 0.86626 0.83981 1.90709 1.57435 1.17086 1.76959 1.21986 1.01513 1.00547 0.95366 1.21628 1.00550 0.94111 0.83984 1.45662 1.17609 1.40179 1.10577 1.22716 1.01935 1.08673 0.86123 1.22302 0.92807 1.02604 1.00379 1.70330 1.24219 1.23702 1.03384 1.25188 0.90075 0.96857 0.97311 0.92044 0.92084 0.91260 0.94396 0.90831 0.82799 0.93905 0.89666 0.79748 0.91587 0.91494 0.91161 0.91473 0.88587 0.87609 0.88355 0.87483 0.81170 0.81594 0.77667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.17 37.16 0.34 -0.72 16 2 C 0.14 1.31 2.88 -67.93 -0.20 1.12 16 3 H 0.10 1.18 6.90 -51.93 -0.36 0.82 16 4 C 0.05 0.49 4.98 -3.82 -0.02 0.47 16 5 N -0.66 -9.69 5.85 -115.06 -0.67 -10.36 16 6 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 7 C 0.45 10.01 7.82 -10.99 -0.09 9.92 16 8 O -0.56 -14.94 15.78 5.54 0.09 -14.85 16 9 N -0.59 -13.91 5.09 -10.96 -0.06 -13.96 16 10 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 11 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.70 13.96 55.50 0.77 -24.92 16 14 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 18 N -0.59 -5.78 2.48 -173.94 -0.43 -6.22 16 19 C 0.08 0.57 9.40 59.85 0.56 1.13 16 20 C 0.53 6.06 7.67 -10.99 -0.08 5.97 16 21 O -0.54 -8.04 15.31 5.56 0.09 -7.96 16 22 C -0.15 -1.35 4.58 -27.88 -0.13 -1.48 16 23 C 0.12 1.11 5.44 -4.04 -0.02 1.09 16 24 N -0.46 -4.61 2.75 -118.57 -0.33 -4.94 16 25 C -0.06 -0.57 11.58 -16.56 -0.19 -0.77 16 26 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 27 N -0.50 -6.76 11.25 -14.67 -0.17 -6.93 16 28 C 0.19 2.22 12.56 -90.37 -1.14 1.08 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.34 6.66 -51.93 -0.35 0.00 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 34 H 0.35 5.85 8.43 -39.29 -0.33 5.52 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.37 7.62 5.76 -40.82 -0.24 7.39 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.39 6.43 -51.92 -0.33 0.06 16 41 H 0.07 0.38 6.44 -51.93 -0.33 0.05 16 42 H 0.10 0.65 7.40 -51.93 -0.38 0.27 16 43 H 0.11 1.00 8.11 -51.93 -0.42 0.58 16 44 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 45 H 0.11 1.11 8.10 -51.93 -0.42 0.69 16 46 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 47 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 48 H 0.21 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 399.62 15.07 6.02 6.02 Total: -1.00 -36.36 399.62 -8.20 -44.56 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -7.35 Total: 14.79 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: -1.45 Total: 10.28 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -0.88 Total: -67.34 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: 0.17 Total: -22.81 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.36 -8.20 -44.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271052842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.288 kcal (2) G-P(sol) polarization free energy of solvation -36.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds