Wall clock time and date at job start Tue Mar 31 2020 20:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46846 * 2 1 4 4 C 1.52998 * 109.46636 * 119.99827 * 2 1 3 5 5 N 1.46905 * 109.46854 * 175.00156 * 4 2 1 6 6 C 1.46901 * 111.00227 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47306 * 180.02562 * 6 5 4 8 8 O 1.21295 * 120.00047 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00045 * 179.97438 * 7 6 5 10 10 C 1.37103 * 119.99694 * 179.97438 * 9 7 6 11 11 H 1.07990 * 120.00016 * 0.02562 * 10 9 7 12 12 C 1.38956 * 119.99484 * 179.97438 * 10 9 7 13 13 N 1.31408 * 119.99476 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00167 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.46932 * 89.99387 * 14 12 10 16 16 H 1.48496 * 109.47079 * 209.99714 * 14 12 10 17 17 H 1.48498 * 109.46864 * 329.99735 * 14 12 10 18 18 N 1.46496 * 109.47122 * 239.99535 * 2 1 3 19 19 C 1.46497 * 120.00352 * 299.99984 * 18 2 1 20 20 C 1.34776 * 119.99846 * 120.00406 * 18 2 1 21 21 O 1.21282 * 119.99940 * 359.97438 * 20 18 2 22 22 C 1.50698 * 120.00035 * 180.02562 * 20 18 2 23 23 C 1.53006 * 109.47184 * 179.97438 * 22 20 18 24 24 N 1.46504 * 109.46883 * 179.97438 * 23 22 20 25 25 C 1.36874 * 126.39943 * 90.00176 * 24 23 22 26 26 C 1.34669 * 106.81918 * 179.97438 * 25 24 23 27 27 N 1.34123 * 108.02125 * 0.02562 * 26 25 24 28 28 C 1.30508 * 109.25485 * 359.72427 * 27 26 25 29 29 H 1.08999 * 109.47218 * 60.00126 * 1 2 3 30 30 H 1.09005 * 109.47503 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47176 * 300.00431 * 1 2 3 32 32 H 1.09001 * 109.47158 * 294.99534 * 4 2 1 33 33 H 1.08996 * 109.47897 * 55.00065 * 4 2 1 34 34 H 1.00902 * 110.99818 * 56.04156 * 5 4 2 35 35 H 1.09004 * 109.46723 * 299.99450 * 6 5 4 36 36 H 1.08996 * 109.46966 * 59.99360 * 6 5 4 37 37 H 0.96993 * 120.00092 * 359.97438 * 9 7 6 38 38 H 0.97001 * 119.99601 * 180.02562 * 13 12 10 39 39 H 1.08996 * 109.47300 * 270.00198 * 19 18 2 40 40 H 1.09010 * 109.46976 * 30.00342 * 19 18 2 41 41 H 1.09007 * 109.47283 * 149.99894 * 19 18 2 42 42 H 1.09001 * 109.47612 * 59.99945 * 22 20 18 43 43 H 1.09001 * 109.47122 * 299.99777 * 22 20 18 44 44 H 1.09001 * 109.47002 * 299.99404 * 23 22 20 45 45 H 1.08993 * 109.46955 * 59.99842 * 23 22 20 46 46 H 1.08001 * 126.59311 * 359.95764 * 25 24 23 47 47 H 1.08000 * 125.99191 * 179.97438 * 26 25 24 48 48 H 1.07997 * 125.65225 * 180.29380 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5039 -0.8266 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5315 -1.6043 2.2809 8 8 6.1066 -1.1394 1.3195 9 7 6.2353 -2.2000 3.2640 10 6 7.6012 -2.2809 3.1769 11 1 8.1131 -1.8669 2.3209 12 6 8.3268 -2.8946 4.1907 13 7 9.6359 -2.9726 4.1070 14 14 7.4412 -3.6100 5.6717 15 1 7.0920 -5.0280 5.4023 16 1 8.3267 -3.5357 6.8614 17 1 6.2008 -2.8350 5.9286 18 7 2.0183 -0.6907 -1.1961 19 6 1.6644 -2.0932 -1.4279 20 6 2.7932 -0.0358 -2.0832 21 8 3.0859 1.1255 -1.8916 22 6 3.2951 -0.7460 -3.3139 23 6 4.1448 0.2157 -4.1470 24 7 4.6332 -0.4750 -5.3432 25 6 4.0043 -0.5403 -6.5571 26 6 4.7960 -1.2682 -7.3675 27 7 5.8786 -1.6378 -6.6673 28 6 5.7906 -1.1616 -5.4554 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7515 -0.1582 2.1370 33 1 1.6053 -1.7197 1.2953 34 1 3.9279 0.0826 1.0824 35 1 3.7556 -0.9587 3.2720 36 1 3.6093 -2.5198 2.4296 37 1 5.7755 -2.5715 4.0330 38 1 10.1424 -3.4013 4.8145 39 1 2.4157 -2.7377 -0.9715 40 1 0.6903 -2.3003 -0.9845 41 1 1.6238 -2.2853 -2.5001 42 1 2.4471 -1.0882 -3.9072 43 1 3.9005 -1.6027 -3.0176 44 1 3.5390 1.0721 -4.4435 45 1 4.9927 0.5583 -3.5540 46 1 3.0553 -0.0940 -6.8154 47 1 4.5943 -1.5123 -8.4000 48 1 6.5212 -1.2963 -4.6716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271052842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:03 Heat of formation + Delta-G solvation = -22.244304 kcal Electronic energy + Delta-G solvation = -29104.170191 eV Core-core repulsion = 25001.733144 eV Total energy + Delta-G solvation = -4102.437047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.95934 -41.08929 -40.27505 -38.05885 -36.20599 -35.77352 -35.57070 -33.76603 -32.96043 -31.11561 -30.22801 -29.09853 -27.75760 -26.62753 -25.81073 -24.41771 -22.39435 -22.24980 -21.64551 -21.29114 -20.36519 -19.88854 -18.84745 -17.92957 -17.65505 -17.16280 -17.00165 -16.75302 -16.56203 -15.96811 -15.82287 -15.41881 -15.27934 -15.03134 -14.88506 -14.80493 -14.59955 -14.39194 -14.22939 -14.04349 -13.90909 -13.74824 -13.53111 -13.26499 -13.14915 -12.96269 -12.87810 -12.76175 -12.53933 -12.42595 -12.34099 -11.99173 -11.75071 -11.52499 -10.99732 -10.89272 -10.58344 -10.45946 -10.26252 -9.56061 -9.44150 -9.31003 -8.42538 -6.03743 1.11967 1.28535 1.34685 1.43565 1.62414 1.74039 1.94829 2.21420 2.21965 2.23691 2.71975 3.13650 3.37928 3.56912 3.69162 3.73106 3.88796 3.89894 4.10348 4.12125 4.22642 4.24503 4.35194 4.38532 4.44228 4.45626 4.52901 4.62149 4.66398 4.72730 4.74741 4.77341 4.80987 4.84102 5.04016 5.11060 5.31143 5.36206 5.51178 5.64226 5.85345 5.89162 6.04400 6.22150 6.29204 6.44212 6.58482 6.87028 7.14498 7.20501 7.38518 7.95760 8.75338 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009535 B = 0.002770 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.705976 B =10106.588006 C =12469.990250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 H 0.073 0.927 4 C 0.051 3.949 5 N -0.680 5.680 6 C 0.065 3.935 7 C 0.447 3.553 8 O -0.614 6.614 9 N -0.591 5.591 10 C -0.329 4.329 11 H 0.052 0.948 12 C -0.017 4.017 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.256 1.256 16 H -0.276 1.276 17 H -0.231 1.231 18 N -0.589 5.589 19 C 0.074 3.926 20 C 0.519 3.481 21 O -0.587 6.587 22 C -0.141 4.141 23 C 0.126 3.874 24 N -0.454 5.454 25 C -0.046 4.046 26 C -0.058 4.058 27 N -0.535 5.535 28 C 0.167 3.833 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.336 0.664 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.050 0.950 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.207 0.793 47 H 0.185 0.815 48 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.556 1.836 -10.047 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.031 3.969 3 H 0.091 0.909 4 C -0.078 4.078 5 N -0.311 5.311 6 C -0.068 4.068 7 C 0.235 3.765 8 O -0.499 6.499 9 N -0.233 5.233 10 C -0.458 4.458 11 H 0.071 0.929 12 C -0.215 4.215 13 N -0.576 5.576 14 Si 0.787 3.213 15 H -0.180 1.180 16 H -0.201 1.201 17 H -0.154 1.154 18 N -0.320 5.320 19 C -0.068 4.068 20 C 0.308 3.692 21 O -0.468 6.468 22 C -0.182 4.182 23 C 0.003 3.997 24 N -0.136 5.136 25 C -0.179 4.179 26 C -0.205 4.205 27 N -0.254 5.254 28 C -0.115 4.115 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.153 0.847 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.225 0.775 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.143 0.857 43 H 0.116 0.884 44 H 0.128 0.872 45 H 0.105 0.895 46 H 0.224 0.776 47 H 0.203 0.797 48 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -26.260 1.695 -11.059 28.544 hybrid contribution 0.120 0.723 1.848 1.988 sum -26.140 2.418 -9.212 27.821 Atomic orbital electron populations 1.22016 0.91768 1.03744 1.03130 1.21148 0.95529 0.96535 0.83701 0.90888 1.22479 0.86557 1.02053 0.96751 1.60032 1.05772 1.26097 1.39246 1.21620 0.89364 1.02362 0.93431 1.21060 0.90864 0.81501 0.83098 1.90556 1.72966 1.51823 1.34530 1.42032 1.06100 1.54004 1.21161 1.18985 0.81993 1.37478 1.07340 0.92938 1.26155 0.96196 0.97299 1.01868 1.69813 1.07570 1.44368 1.35868 0.85340 0.79399 0.79768 0.76830 1.17998 1.20113 1.15378 1.47643 1.49541 1.13205 1.21608 1.21956 1.02009 0.79885 1.02971 1.20558 0.77474 0.86319 0.84874 1.90688 1.59096 1.19000 1.78036 1.21893 1.02104 0.99586 0.94602 1.21565 0.99991 0.94535 0.83615 1.45710 1.17168 1.39617 1.11105 1.23269 1.02504 1.07126 0.85022 1.22756 0.92656 1.03499 1.01544 1.70282 1.25868 1.24930 1.04351 1.25310 0.91114 0.97810 0.97312 0.92343 0.90234 0.90085 0.92709 0.88731 0.84662 0.90880 0.86467 0.77465 0.91141 0.93107 0.88616 0.89682 0.85742 0.88390 0.87244 0.89488 0.77581 0.79746 0.77363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.17 71.98 0.66 -0.82 16 2 C 0.13 2.31 2.88 44.99 0.13 2.44 16 3 H 0.07 1.69 6.90 -2.39 -0.02 1.68 16 4 C 0.05 0.88 4.98 86.30 0.43 1.31 16 5 N -0.68 -18.86 5.85 -517.93 -3.03 -21.89 16 6 C 0.06 1.85 6.17 85.56 0.53 2.38 16 7 C 0.45 19.92 7.82 87.66 0.69 20.60 16 8 O -0.61 -34.18 15.78 -3.08 -0.05 -34.23 16 9 N -0.59 -27.62 5.09 -306.98 -1.56 -29.19 16 10 C -0.33 -19.32 10.16 84.04 0.85 -18.46 16 11 H 0.05 3.70 7.39 -2.92 -0.02 3.68 16 12 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 13 N -0.94 -56.75 13.96 21.66 0.30 -56.45 16 14 Si 0.97 38.45 27.74 68.60 1.90 40.35 16 15 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 16 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 17 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 18 N -0.59 -10.60 2.48 -822.60 -2.04 -12.64 16 19 C 0.07 0.87 9.40 127.77 1.20 2.07 16 20 C 0.52 11.76 7.67 87.66 0.67 12.44 16 21 O -0.59 -17.96 15.31 -3.04 -0.05 -18.01 16 22 C -0.14 -2.39 4.58 29.85 0.14 -2.25 16 23 C 0.13 2.33 5.44 86.38 0.47 2.80 16 24 N -0.45 -9.04 2.75 -529.06 -1.46 -10.49 16 25 C -0.05 -0.79 11.58 83.09 0.96 0.17 16 26 C -0.06 -1.23 11.87 83.52 0.99 -0.24 16 27 N -0.54 -14.93 11.25 -200.31 -2.25 -17.18 16 28 C 0.17 4.12 12.56 180.26 2.26 6.38 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.52 6.66 -2.38 -0.02 0.50 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 1.28 7.84 -2.39 -0.02 1.26 16 34 H 0.34 11.25 8.43 -89.69 -0.76 10.50 16 35 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.39 14.91 5.76 -92.71 -0.53 14.37 16 38 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 0.65 6.43 -2.38 -0.02 0.64 16 41 H 0.08 0.70 6.44 -2.38 -0.02 0.68 16 42 H 0.12 1.37 7.40 -2.39 -0.02 1.35 16 43 H 0.10 1.85 8.11 -2.39 -0.02 1.83 16 44 H 0.11 1.80 8.10 -2.39 -0.02 1.78 16 45 H 0.09 1.97 8.10 -2.39 -0.02 1.95 16 46 H 0.21 1.87 8.06 -2.91 -0.02 1.84 16 47 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 48 H 0.21 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -87.78 399.62 1.85 -85.93 By element: Atomic # 1 Polarization: 45.79 SS G_CDS: -0.36 Total: 45.43 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: 10.45 Total: 28.37 kcal Atomic # 7 Polarization: -137.80 SS G_CDS: -10.04 Total: -147.85 kcal Atomic # 8 Polarization: -52.14 SS G_CDS: -0.10 Total: -52.23 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.90 Total: 40.35 kcal Total: -87.78 1.85 -85.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271052842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.687 kcal (2) G-P(sol) polarization free energy of solvation -87.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds