Wall clock time and date at job start Tue Mar 31 2020 19:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46800 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00338 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99855 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00193 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00238 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00205 * 180.02562 * 11 10 8 14 14 N 1.31415 * 119.99909 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00181 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47099 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47011 * 119.99494 * 15 13 11 18 18 H 1.48500 * 109.46924 * 239.99470 * 15 13 11 19 19 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 20 20 C 1.34775 * 120.00290 * 275.00553 * 19 2 1 21 21 O 1.21284 * 120.00239 * 359.97438 * 20 19 2 22 22 C 1.50707 * 119.99766 * 179.97438 * 20 19 2 23 23 C 1.50706 * 109.46782 * 179.97438 * 22 20 19 24 24 C 1.39871 * 126.04035 * 269.68948 * 23 22 20 25 25 N 1.30834 * 108.19829 * 179.81986 * 24 23 22 26 26 N 1.40084 * 108.21037 * 0.43780 * 25 24 23 27 27 C 1.46494 * 126.03947 * 179.69397 * 26 25 24 28 28 C 1.34957 * 107.92053 * 359.72065 * 26 25 24 29 29 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 30 30 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 32 32 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 33 33 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 1.00902 * 111.00582 * 303.95797 * 6 5 4 37 37 H 1.08995 * 109.47167 * 300.00240 * 7 6 5 38 38 H 1.09003 * 109.46442 * 60.00214 * 7 6 5 39 39 H 0.97000 * 119.99567 * 0.02562 * 10 8 7 40 40 H 0.96998 * 120.00315 * 179.97438 * 14 13 11 41 41 H 0.97003 * 119.99849 * 95.00425 * 19 2 1 42 42 H 1.08993 * 109.47314 * 299.99790 * 22 20 19 43 43 H 1.08997 * 109.47088 * 60.00406 * 22 20 19 44 44 H 1.07994 * 125.89721 * 0.02562 * 24 23 22 45 45 H 1.09000 * 109.47585 * 270.02880 * 27 26 25 46 46 H 1.09002 * 109.47077 * 30.02860 * 27 26 25 47 47 H 1.08999 * 109.47315 * 150.02891 * 27 26 25 48 48 H 1.07996 * 126.12028 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0547 -1.3061 -2.5127 7 6 5.5183 -1.2225 -2.6081 8 6 5.9826 -1.9423 -3.8479 9 8 5.1740 -2.4724 -4.5802 10 7 7.2966 -1.9971 -4.1430 11 6 7.7191 -2.6514 -5.2712 12 1 6.9991 -3.1235 -5.9233 13 6 9.0737 -2.7084 -5.5751 14 7 9.9499 -2.1345 -4.7815 15 14 9.6495 -3.6006 -7.1120 16 1 8.4751 -4.1575 -7.8303 17 1 10.3664 -2.6485 -7.9979 18 1 10.5648 -4.7056 -6.7291 19 7 2.0183 -0.6905 1.1962 20 6 2.1469 -0.0182 2.3572 21 8 1.8588 1.1587 2.4115 22 6 2.6487 -0.7288 3.5878 23 6 2.7000 0.2398 4.7413 24 6 3.7925 1.0366 5.0988 25 7 3.4563 1.7449 6.1462 26 7 2.1407 1.4134 6.4949 27 6 1.3789 1.9722 7.6145 28 6 1.6992 0.4879 5.6175 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5137 0.8900 32 1 1.6055 -0.2617 -2.1369 33 1 1.7517 -1.7714 -1.2056 34 1 3.9995 -1.0726 -0.4258 35 1 3.8532 0.4372 -1.3572 36 1 3.7453 -2.2664 -2.5272 37 1 5.8197 -0.1764 -2.6613 38 1 5.9666 -1.6856 -1.7291 39 1 7.9433 -1.5734 -3.5572 40 1 10.8956 -2.1745 -4.9934 41 1 2.2490 -1.6317 1.1527 42 1 1.9758 -1.5505 3.8326 43 1 3.6478 -1.1212 3.3987 44 1 4.7474 1.0649 4.5951 45 1 1.5408 1.3634 8.5040 46 1 1.7113 2.9923 7.8069 47 1 0.3177 1.9768 7.3656 48 1 0.7223 0.0275 5.6154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272680429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:19 Heat of formation + Delta-G solvation = -1.552143 kcal Electronic energy + Delta-G solvation = -27712.565254 eV Core-core repulsion = 23611.025486 eV Total energy + Delta-G solvation = -4101.539767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51819 -39.86088 -38.30555 -36.91379 -34.95489 -33.94933 -33.81373 -32.42152 -31.40429 -31.16592 -29.29043 -28.52232 -26.28527 -26.03965 -24.11369 -22.45251 -21.63830 -21.40115 -20.79047 -20.22087 -19.21659 -17.88344 -17.33482 -17.17766 -16.37332 -16.13844 -15.66028 -15.52644 -15.32925 -14.76684 -14.65034 -14.41042 -14.10643 -13.90299 -13.84196 -13.61706 -13.55708 -13.33625 -13.06143 -12.94911 -12.82124 -12.64585 -12.24065 -12.17263 -12.06642 -11.67058 -11.50919 -11.29534 -11.11805 -11.04657 -10.92861 -10.86756 -10.33788 -10.21766 -9.99589 -9.68195 -9.51429 -9.25256 -8.66900 -8.45123 -8.04772 -7.95068 -6.41097 -3.81938 1.60664 2.22468 2.45074 2.53211 3.16667 3.16919 3.27459 3.34749 3.91565 4.05859 4.16500 4.27187 4.48444 4.63185 4.72914 4.77823 4.79360 4.82173 4.93964 4.98604 5.00122 5.04721 5.20036 5.25390 5.28863 5.32597 5.39595 5.48854 5.53848 5.56397 5.77097 5.78244 5.80975 5.93119 5.97475 6.02673 6.09806 6.28199 6.35745 6.38221 6.69309 7.22236 7.34907 7.42063 7.56027 7.67420 8.07288 8.11709 8.62005 9.18635 9.55187 10.06562 10.76715 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.001667 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.928043 B =16794.377381 C =18151.948193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.089 0.911 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.670 5.670 7 C 0.051 3.949 8 C 0.441 3.559 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 N -0.728 5.728 20 C 0.512 3.488 21 O -0.533 6.533 22 C -0.061 4.061 23 C -0.220 4.220 24 C 0.064 3.936 25 N -0.299 5.299 26 N -0.378 5.378 27 C 0.103 3.897 28 C 0.068 3.932 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.348 0.652 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.399 0.601 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.182 0.818 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.081 3.688 24.165 30.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.163 4.163 5 C -0.069 4.069 6 N -0.302 5.302 7 C -0.081 4.081 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.201 5.201 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 N -0.381 5.381 20 C 0.298 3.702 21 O -0.409 6.409 22 C -0.102 4.102 23 C -0.232 4.232 24 C -0.122 4.122 25 N -0.120 5.120 26 N -0.160 5.160 27 C -0.039 4.039 28 C -0.079 4.079 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.167 0.833 37 H 0.103 0.897 38 H 0.060 0.940 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.199 0.801 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -18.443 5.697 24.257 31.000 hybrid contribution 0.909 -1.805 -0.307 2.044 sum -17.535 3.892 23.949 29.936 Atomic orbital electron populations 1.22145 0.95266 1.02034 1.02468 1.20951 0.93873 0.97715 0.83641 0.89338 1.21874 0.95845 1.01206 0.97358 1.21958 0.94274 0.99774 0.90937 1.60048 1.09807 1.21627 1.38743 1.21661 0.88391 1.01283 0.96811 1.19826 0.83324 0.85888 0.88350 1.90518 1.53341 1.50578 1.52352 1.41876 1.05436 1.48938 1.23833 1.19760 0.91989 1.30138 1.00997 0.87859 1.25267 0.95630 0.97840 0.99239 1.69622 1.02477 1.44321 1.37883 0.85798 0.78748 0.78826 0.80953 1.19212 1.20741 1.20793 1.46186 1.67978 1.14064 1.09830 1.20758 0.77514 0.87527 0.84429 1.90711 1.49244 1.16001 1.84903 1.19905 1.03614 0.96772 0.89932 1.19391 0.95154 1.07138 1.01489 1.23751 0.99709 0.94346 0.94405 1.77360 0.93454 1.23458 1.17699 1.48393 1.11013 1.32204 1.24344 1.21837 0.94975 1.00492 0.86582 1.22214 0.99652 0.94026 0.91991 0.91511 0.92508 0.92328 0.89246 0.91371 0.95561 0.91140 0.83306 0.89655 0.93955 0.77458 0.91926 0.76678 0.88495 0.88015 0.80135 0.90803 0.89293 0.89554 0.81237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.48 37.16 0.35 -0.96 16 2 C 0.14 1.27 2.57 -67.94 -0.17 1.10 16 3 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 4 C -0.12 -1.16 5.01 -26.74 -0.13 -1.29 16 5 C 0.06 0.70 5.57 -3.83 -0.02 0.68 16 6 N -0.67 -10.49 6.12 -115.06 -0.70 -11.20 16 7 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 8 C 0.44 10.42 7.82 -10.99 -0.09 10.33 16 9 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 10 N -0.56 -14.35 5.29 -10.97 -0.06 -14.41 16 11 C -0.30 -8.37 9.68 -14.94 -0.14 -8.52 16 12 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 15 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 19 N -0.73 -5.58 4.53 -53.81 -0.24 -5.82 16 20 C 0.51 4.83 7.79 -10.98 -0.09 4.74 16 21 O -0.53 -7.39 15.70 5.55 0.09 -7.31 16 22 C -0.06 -0.40 6.19 -29.03 -0.18 -0.58 16 23 C -0.22 -1.99 4.59 -105.05 -0.48 -2.47 16 24 C 0.06 0.67 11.96 -17.37 -0.21 0.46 16 25 N -0.30 -3.49 12.57 30.62 0.39 -3.10 16 26 N -0.38 -3.43 4.01 -68.17 -0.27 -3.70 16 27 C 0.10 0.48 11.47 59.84 0.69 1.17 16 28 C 0.07 0.56 11.40 -17.22 -0.20 0.36 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.03 0.28 7.75 -51.93 -0.40 -0.12 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.35 5.50 8.43 -39.29 -0.33 5.17 16 37 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.40 2.15 8.60 -40.82 -0.35 1.80 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 48 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 410.83 15.07 6.19 6.19 Total: -1.00 -37.09 410.83 -7.28 -44.37 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -7.65 Total: 12.21 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -0.80 Total: 6.37 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.17 Total: -62.10 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.17 Total: -23.07 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -37.09 -7.28 -44.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272680429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.821 kcal (2) G-P(sol) polarization free energy of solvation -37.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds