Wall clock time and date at job start Tue Mar 31 2020 19:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46800 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00338 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99855 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00193 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00238 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00205 * 180.02562 * 11 10 8 14 14 N 1.31415 * 119.99909 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00181 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47099 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47011 * 119.99494 * 15 13 11 18 18 H 1.48500 * 109.46924 * 239.99470 * 15 13 11 19 19 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 20 20 C 1.34775 * 120.00290 * 275.00553 * 19 2 1 21 21 O 1.21284 * 120.00239 * 359.97438 * 20 19 2 22 22 C 1.50707 * 119.99766 * 179.97438 * 20 19 2 23 23 C 1.50706 * 109.46782 * 179.97438 * 22 20 19 24 24 C 1.39871 * 126.04035 * 269.68948 * 23 22 20 25 25 N 1.30834 * 108.19829 * 179.81986 * 24 23 22 26 26 N 1.40084 * 108.21037 * 0.43780 * 25 24 23 27 27 C 1.46494 * 126.03947 * 179.69397 * 26 25 24 28 28 C 1.34957 * 107.92053 * 359.72065 * 26 25 24 29 29 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 30 30 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 32 32 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 33 33 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 1.00902 * 111.00582 * 303.95797 * 6 5 4 37 37 H 1.08995 * 109.47167 * 300.00240 * 7 6 5 38 38 H 1.09003 * 109.46442 * 60.00214 * 7 6 5 39 39 H 0.97000 * 119.99567 * 0.02562 * 10 8 7 40 40 H 0.96998 * 120.00315 * 179.97438 * 14 13 11 41 41 H 0.97003 * 119.99849 * 95.00425 * 19 2 1 42 42 H 1.08993 * 109.47314 * 299.99790 * 22 20 19 43 43 H 1.08997 * 109.47088 * 60.00406 * 22 20 19 44 44 H 1.07994 * 125.89721 * 0.02562 * 24 23 22 45 45 H 1.09000 * 109.47585 * 270.02880 * 27 26 25 46 46 H 1.09002 * 109.47077 * 30.02860 * 27 26 25 47 47 H 1.08999 * 109.47315 * 150.02891 * 27 26 25 48 48 H 1.07996 * 126.12028 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0547 -1.3061 -2.5127 7 6 5.5183 -1.2225 -2.6081 8 6 5.9826 -1.9423 -3.8479 9 8 5.1740 -2.4724 -4.5802 10 7 7.2966 -1.9971 -4.1430 11 6 7.7191 -2.6514 -5.2712 12 1 6.9991 -3.1235 -5.9233 13 6 9.0737 -2.7084 -5.5751 14 7 9.9499 -2.1345 -4.7815 15 14 9.6495 -3.6006 -7.1120 16 1 8.4751 -4.1575 -7.8303 17 1 10.3664 -2.6485 -7.9979 18 1 10.5648 -4.7056 -6.7291 19 7 2.0183 -0.6905 1.1962 20 6 2.1469 -0.0182 2.3572 21 8 1.8588 1.1587 2.4115 22 6 2.6487 -0.7288 3.5878 23 6 2.7000 0.2398 4.7413 24 6 3.7925 1.0366 5.0988 25 7 3.4563 1.7449 6.1462 26 7 2.1407 1.4134 6.4949 27 6 1.3789 1.9722 7.6145 28 6 1.6992 0.4879 5.6175 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5137 0.8900 32 1 1.6055 -0.2617 -2.1369 33 1 1.7517 -1.7714 -1.2056 34 1 3.9995 -1.0726 -0.4258 35 1 3.8532 0.4372 -1.3572 36 1 3.7453 -2.2664 -2.5272 37 1 5.8197 -0.1764 -2.6613 38 1 5.9666 -1.6856 -1.7291 39 1 7.9433 -1.5734 -3.5572 40 1 10.8956 -2.1745 -4.9934 41 1 2.2490 -1.6317 1.1527 42 1 1.9758 -1.5505 3.8326 43 1 3.6478 -1.1212 3.3987 44 1 4.7474 1.0649 4.5951 45 1 1.5408 1.3634 8.5040 46 1 1.7113 2.9923 7.8069 47 1 0.3177 1.9768 7.3656 48 1 0.7223 0.0275 5.6154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272680429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:18 Heat of formation + Delta-G solvation = -30.706566 kcal Electronic energy + Delta-G solvation = -27713.829484 eV Core-core repulsion = 23611.025486 eV Total energy + Delta-G solvation = -4102.803998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.14384 -40.61201 -40.12268 -37.88836 -36.23829 -35.64814 -34.51915 -33.28676 -33.09422 -32.09337 -30.30706 -29.05228 -27.76652 -26.67428 -25.74876 -23.41698 -22.43506 -22.02476 -21.54214 -21.04550 -20.83513 -19.89368 -18.01701 -17.82979 -17.78207 -17.19610 -16.78380 -16.46118 -16.22901 -16.07421 -15.92954 -15.37474 -15.33015 -15.14381 -14.99967 -14.59703 -14.28396 -14.20597 -13.91611 -13.76086 -13.55594 -13.48237 -13.41213 -13.20654 -13.17077 -12.90199 -12.74759 -12.61856 -12.39975 -12.20194 -12.10885 -11.99711 -11.73588 -11.51851 -11.50353 -10.78181 -10.34649 -10.33987 -10.00716 -9.96806 -9.28734 -9.28256 -8.45923 -5.94775 0.98994 1.37773 1.43164 1.57473 1.70650 1.79100 1.84216 2.05979 2.30150 2.52880 2.91817 3.21485 3.52408 3.67082 3.92452 4.01055 4.05768 4.12917 4.24519 4.31524 4.33305 4.39349 4.44043 4.47574 4.50415 4.55278 4.57066 4.66842 4.68095 4.72823 4.84292 4.89176 4.91890 5.00989 5.17530 5.20711 5.23974 5.36277 5.42144 5.68393 5.71535 5.90655 6.12130 6.18351 6.47466 6.60837 6.74400 6.75927 7.13461 7.46488 7.57143 8.12152 8.71678 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016956 B = 0.001667 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.928043 B =16794.377381 C =18151.948193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.149 3.851 3 H 0.064 0.936 4 C -0.113 4.113 5 C 0.063 3.937 6 N -0.684 5.684 7 C 0.065 3.935 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.574 5.574 11 C -0.334 4.334 12 H 0.080 0.920 13 C -0.013 4.013 14 N -0.921 5.921 15 Si 0.994 3.006 16 H -0.272 1.272 17 H -0.272 1.272 18 H -0.270 1.270 19 N -0.716 5.716 20 C 0.511 3.489 21 O -0.583 6.583 22 C -0.053 4.053 23 C -0.237 4.237 24 C 0.045 3.955 25 N -0.343 5.343 26 N -0.384 5.384 27 C 0.093 3.907 28 C 0.066 3.934 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.347 0.653 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.414 0.586 42 H 0.129 0.871 43 H 0.119 0.881 44 H 0.188 0.812 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.111 0.889 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.813 2.410 24.945 31.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.082 0.918 4 C -0.151 4.151 5 C -0.065 4.065 6 N -0.317 5.317 7 C -0.067 4.067 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.211 5.211 11 C -0.464 4.464 12 H 0.098 0.902 13 C -0.213 4.213 14 N -0.562 5.562 15 Si 0.817 3.183 16 H -0.197 1.197 17 H -0.198 1.198 18 H -0.195 1.195 19 N -0.369 5.369 20 C 0.299 3.701 21 O -0.462 6.462 22 C -0.093 4.093 23 C -0.248 4.248 24 C -0.140 4.140 25 N -0.166 5.166 26 N -0.166 5.166 27 C -0.047 4.047 28 C -0.081 4.081 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.166 0.834 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.251 0.749 42 H 0.147 0.853 43 H 0.137 0.863 44 H 0.205 0.795 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.130 0.870 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -19.164 4.407 25.065 31.858 hybrid contribution 1.066 -1.373 -0.503 1.809 sum -18.098 3.034 24.562 30.660 Atomic orbital electron populations 1.22078 0.94459 1.02824 1.01936 1.20772 0.94396 0.96511 0.83933 0.91803 1.21755 0.94057 1.02152 0.97146 1.22000 0.95711 0.98865 0.89952 1.60030 1.08470 1.21910 1.41271 1.21510 0.89872 1.01058 0.94275 1.20891 0.82322 0.84788 0.89476 1.90485 1.54150 1.52077 1.54177 1.41951 1.06355 1.49261 1.23543 1.19722 0.92370 1.31969 1.02305 0.90237 1.26051 0.95175 0.98101 1.01970 1.69680 1.02916 1.44566 1.39023 0.84858 0.78058 0.77987 0.77349 1.19704 1.19754 1.19536 1.46081 1.67163 1.14659 1.09019 1.21267 0.76539 0.86948 0.85338 1.90698 1.51591 1.18275 1.85685 1.19957 1.05222 0.96589 0.87567 1.19736 0.94893 1.07707 1.02512 1.24068 1.00747 0.94720 0.94511 1.77263 0.95399 1.24969 1.18921 1.48759 1.10422 1.32263 1.25146 1.22154 0.95892 1.00419 0.86211 1.22817 1.00672 0.93360 0.91231 0.91226 0.90983 0.93717 0.90024 0.89718 0.93783 0.91950 0.83399 0.88475 0.91397 0.77008 0.91320 0.74938 0.85326 0.86282 0.79471 0.89242 0.89742 0.87014 0.78042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.48 71.98 0.68 -1.61 16 2 C 0.15 2.44 2.57 44.99 0.12 2.56 16 3 H 0.06 1.40 7.58 -2.39 -0.02 1.38 16 4 C -0.11 -1.88 5.01 30.59 0.15 -1.72 16 5 C 0.06 1.35 5.57 86.30 0.48 1.83 16 6 N -0.68 -20.38 6.12 -517.93 -3.17 -23.55 16 7 C 0.07 2.20 6.17 85.55 0.53 2.73 16 8 C 0.44 20.71 7.82 87.65 0.69 21.39 16 9 O -0.62 -34.23 15.78 -3.06 -0.05 -34.28 16 10 N -0.57 -29.45 5.29 -306.99 -1.62 -31.07 16 11 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 12 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 13 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 14 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 15 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 19 N -0.72 -9.37 4.53 -442.54 -2.00 -11.37 16 20 C 0.51 8.83 7.79 87.66 0.68 9.52 16 21 O -0.58 -16.05 15.70 -3.04 -0.05 -16.10 16 22 C -0.05 -0.57 6.19 29.11 0.18 -0.39 16 23 C -0.24 -4.01 4.59 -20.14 -0.09 -4.10 16 24 C 0.04 0.94 11.96 85.24 1.02 1.96 16 25 N -0.34 -8.19 12.57 -57.03 -0.72 -8.90 16 26 N -0.38 -6.72 4.01 -369.58 -1.48 -8.20 16 27 C 0.09 0.77 11.47 127.77 1.47 2.24 16 28 C 0.07 0.98 11.40 83.54 0.95 1.94 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.04 0.80 7.75 -2.39 -0.02 0.78 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.35 10.44 8.43 -89.69 -0.76 9.69 16 37 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 40 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 41 H 0.41 3.08 8.60 -92.71 -0.80 2.28 16 42 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.19 3.25 8.06 -2.91 -0.02 3.22 16 45 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 48 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -82.40 410.83 0.06 -82.35 By element: Atomic # 1 Polarization: 39.09 SS G_CDS: -1.29 Total: 37.79 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 8.13 Total: 17.91 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -8.72 Total: -132.53 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -0.10 Total: -50.38 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -82.40 0.06 -82.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272680429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.640 kcal (2) G-P(sol) polarization free energy of solvation -82.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds