Wall clock time and date at job start Tue Mar 31 2020 19:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47410 * 2 1 4 4 C 1.53004 * 109.47525 * 119.99734 * 2 1 3 5 5 C 1.52993 * 109.47360 * 184.99971 * 4 2 1 6 6 N 1.46905 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46943 * 180.02562 * 7 6 5 9 9 O 1.21292 * 120.00024 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99767 * 180.02562 * 8 7 6 11 11 C 1.37102 * 120.00095 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99386 * 359.97438 * 11 10 8 13 13 C 1.38941 * 120.00393 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00397 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00009 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47309 * 89.99758 * 15 13 11 17 17 H 1.48496 * 109.47518 * 209.99884 * 15 13 11 18 18 H 1.48503 * 109.47255 * 329.99853 * 15 13 11 19 19 N 1.46500 * 109.47120 * 239.99886 * 2 1 3 20 20 C 1.34779 * 120.00042 * 85.00050 * 19 2 1 21 21 O 1.21276 * 119.99621 * 359.97438 * 20 19 2 22 22 C 1.50700 * 120.00130 * 179.97438 * 20 19 2 23 23 C 1.50695 * 109.47283 * 179.97438 * 22 20 19 24 24 C 1.39870 * 126.03979 * 269.69313 * 23 22 20 25 25 N 1.30840 * 108.20072 * 179.81639 * 24 23 22 26 26 N 1.40086 * 108.20596 * 0.43820 * 25 24 23 27 27 C 1.46500 * 126.03743 * 179.69774 * 26 25 24 28 28 C 1.34952 * 107.92315 * 359.71894 * 26 25 24 29 29 H 1.09005 * 109.47161 * 299.99783 * 1 2 3 30 30 H 1.08995 * 109.47284 * 60.00507 * 1 2 3 31 31 H 1.09000 * 109.46886 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46514 * 64.99866 * 4 2 1 33 33 H 1.08998 * 109.46924 * 305.00346 * 4 2 1 34 34 H 1.09001 * 109.47393 * 60.00433 * 5 4 2 35 35 H 1.08998 * 109.47408 * 300.00078 * 5 4 2 36 36 H 1.00901 * 110.99869 * 56.04956 * 6 5 4 37 37 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 38 38 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 39 39 H 0.96997 * 120.00713 * 359.97438 * 10 8 7 40 40 H 0.97001 * 120.00755 * 180.02562 * 14 13 11 41 41 H 0.96995 * 120.00031 * 264.99706 * 19 2 1 42 42 H 1.09003 * 109.47200 * 300.00282 * 22 20 19 43 43 H 1.09000 * 109.47091 * 59.99943 * 22 20 19 44 44 H 1.07996 * 125.89936 * 0.02562 * 24 23 22 45 45 H 1.09000 * 109.47205 * 270.02615 * 27 26 25 46 46 H 1.09003 * 109.46897 * 30.02538 * 27 26 25 47 47 H 1.08999 * 109.46895 * 150.02385 * 27 26 25 48 48 H 1.08000 * 126.12283 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0546 -1.3062 2.5128 7 6 5.5181 -1.2226 2.6083 8 6 5.9826 -1.9435 3.8475 9 8 5.1740 -2.4743 4.5794 10 7 7.2964 -1.9976 4.1430 11 6 7.7191 -2.6530 5.2706 12 1 6.9990 -3.1256 5.9223 13 6 9.0736 -2.7092 5.5750 14 7 9.4786 -3.3370 6.6561 15 14 10.3190 -1.8925 4.4475 16 1 10.5336 -0.4886 4.8814 17 1 11.6048 -2.6324 4.5116 18 1 9.8085 -1.9070 3.0531 19 7 2.0183 -0.6906 -1.1962 20 6 2.1470 -0.0183 -2.3572 21 8 1.8581 1.1583 -2.4117 22 6 2.6499 -0.7286 -3.5875 23 6 2.6999 0.2395 -4.7413 24 6 1.6672 0.4898 -5.6508 25 7 2.0828 1.3915 -6.5030 26 7 3.3985 1.7366 -6.1682 27 6 4.2403 2.7078 -6.8712 28 6 3.7538 1.0160 -5.0838 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 3.8532 0.4370 1.3574 35 1 3.9995 -1.0727 0.4260 36 1 3.7452 -2.2665 2.5272 37 1 5.9666 -1.6858 1.7294 38 1 5.8196 -0.1765 2.6615 39 1 7.9431 -1.5729 3.5580 40 1 10.4242 -3.3759 6.8689 41 1 2.2490 -1.6317 -1.1526 42 1 3.6492 -1.1204 -3.3979 43 1 1.9777 -1.5509 -3.8325 44 1 0.6937 0.0222 -5.6480 45 1 4.8004 2.2014 -7.6573 46 1 3.6116 3.4807 -7.3133 47 1 4.9352 3.1640 -6.1661 48 1 4.7084 1.0523 -4.5800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272680430.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:21 Heat of formation + Delta-G solvation = 5.402176 kcal Electronic energy + Delta-G solvation = -27821.320902 eV Core-core repulsion = 23720.082696 eV Total energy + Delta-G solvation = -4101.238206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55417 -39.90609 -38.51653 -36.99383 -35.05413 -33.97879 -33.89390 -32.46518 -31.69844 -31.38649 -29.39897 -28.55736 -26.42736 -26.10482 -23.98846 -22.47532 -21.70305 -21.43555 -20.83291 -20.25932 -19.38826 -18.35732 -17.37300 -17.19529 -16.44589 -16.18700 -15.69007 -15.63773 -15.33536 -14.97955 -14.72638 -14.43202 -14.32251 -13.98009 -13.78761 -13.68791 -13.44920 -13.35912 -13.02565 -12.99696 -12.85132 -12.65259 -12.46863 -12.26925 -12.15129 -12.08937 -11.75413 -11.40695 -11.20458 -11.14456 -10.99961 -10.90823 -10.61399 -10.03834 -9.99211 -9.71847 -9.58990 -9.29695 -8.70309 -8.60651 -8.21156 -8.15376 -6.32585 -3.84131 1.57827 2.19423 2.40443 2.48943 3.00318 3.05393 3.12409 3.13394 3.72215 3.99652 4.08786 4.14165 4.48075 4.57357 4.69715 4.71996 4.74270 4.77641 4.83523 4.86998 4.98267 5.00125 5.09080 5.20061 5.21144 5.26434 5.34283 5.45520 5.47298 5.52215 5.59814 5.73371 5.74802 5.78543 5.88454 5.89616 5.97717 6.05527 6.31192 6.33855 6.66275 7.07177 7.30532 7.37880 7.55296 7.57246 8.07442 8.12974 8.58196 8.93420 9.40850 9.81080 10.80512 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012506 B = 0.001889 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.432889 B =14821.146141 C =16695.734636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.088 0.912 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.670 5.670 7 C 0.049 3.951 8 C 0.449 3.551 9 O -0.565 6.565 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.881 5.881 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 N -0.728 5.728 20 C 0.512 3.488 21 O -0.533 6.533 22 C -0.061 4.061 23 C -0.221 4.221 24 C 0.063 3.937 25 N -0.300 5.300 26 N -0.377 5.377 27 C 0.102 3.898 28 C 0.070 3.930 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.026 0.974 36 H 0.350 0.650 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.399 0.601 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.180 0.820 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.987 7.925 -27.274 30.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.106 0.894 4 C -0.163 4.163 5 C -0.069 4.069 6 N -0.302 5.302 7 C -0.084 4.084 8 C 0.235 3.765 9 O -0.446 6.446 10 N -0.230 5.230 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.521 5.521 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.196 1.196 19 N -0.381 5.381 20 C 0.298 3.702 21 O -0.408 6.408 22 C -0.102 4.102 23 C -0.233 4.233 24 C -0.124 4.124 25 N -0.121 5.121 26 N -0.158 5.158 27 C -0.039 4.039 28 C -0.076 4.076 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.169 0.831 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.233 0.767 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.197 0.803 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.861 9.725 -27.359 31.756 hybrid contribution 1.887 -0.930 -0.664 2.206 sum -10.975 8.795 -28.022 31.353 Atomic orbital electron populations 1.22149 0.95158 1.02132 1.02553 1.20949 0.93993 0.97614 0.83583 0.89399 1.21879 0.95667 1.01337 0.97451 1.21961 0.94466 0.99681 0.90797 1.60041 1.09448 1.21829 1.38897 1.21693 0.88841 1.01232 0.96635 1.19722 0.82866 0.85623 0.88275 1.90564 1.52917 1.49330 1.51825 1.42211 1.05975 1.50602 1.24240 1.19435 0.93499 1.30434 1.00034 0.86275 1.25040 0.96997 0.97460 0.96696 1.69618 1.16292 1.41684 1.24509 0.86666 0.81907 0.80247 0.80514 1.19592 1.20190 1.19563 1.46193 1.68000 1.14068 1.09842 1.20761 0.77570 0.87527 0.84382 1.90711 1.49209 1.16078 1.84841 1.19899 1.03418 0.96979 0.89904 1.19379 0.95085 1.06874 1.01988 1.23700 0.99574 0.95995 0.93092 1.77341 0.92383 1.17932 1.24447 1.48393 1.10982 1.33068 1.23381 1.21858 0.93581 0.91065 0.97443 1.22263 1.00449 0.94353 0.90580 0.91494 0.92218 0.92444 0.91273 0.89165 0.91152 0.95563 0.83085 0.93887 0.89547 0.79708 0.91606 0.76678 0.88395 0.88142 0.80282 0.90743 0.89291 0.89439 0.81118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.48 37.15 0.35 -0.94 16 2 C 0.14 1.21 2.57 -67.93 -0.17 1.03 16 3 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 4 C -0.13 -1.09 5.01 -26.73 -0.13 -1.22 16 5 C 0.06 0.64 5.57 -3.82 -0.02 0.62 16 6 N -0.67 -9.80 6.13 -115.06 -0.70 -10.50 16 7 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 8 C 0.45 10.07 7.82 -10.99 -0.09 9.98 16 9 O -0.56 -15.01 15.78 5.55 0.09 -14.92 16 10 N -0.59 -13.94 5.09 -10.96 -0.06 -13.99 16 11 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 12 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 13 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 14 N -0.88 -25.59 13.96 55.49 0.77 -24.82 16 15 Si 0.88 19.17 27.73 -169.99 -4.71 14.45 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 19 N -0.73 -5.24 4.53 -53.81 -0.24 -5.49 16 20 C 0.51 4.61 7.79 -10.98 -0.09 4.52 16 21 O -0.53 -7.17 15.70 5.56 0.09 -7.09 16 22 C -0.06 -0.38 6.18 -29.04 -0.18 -0.56 16 23 C -0.22 -1.92 4.59 -105.06 -0.48 -2.41 16 24 C 0.06 0.60 11.96 -17.36 -0.21 0.39 16 25 N -0.30 -3.34 12.58 30.62 0.39 -2.95 16 26 N -0.38 -3.38 4.01 -68.16 -0.27 -3.66 16 27 C 0.10 0.49 11.47 59.85 0.69 1.18 16 28 C 0.07 0.58 11.40 -17.22 -0.20 0.39 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.25 7.75 -51.93 -0.40 -0.15 16 36 H 0.35 5.21 8.43 -39.29 -0.33 4.88 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.40 1.96 8.60 -40.82 -0.35 1.61 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.18 1.26 8.06 -52.49 -0.42 0.83 16 45 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 407.71 15.07 6.14 6.14 Total: -1.00 -38.02 407.71 -6.93 -44.95 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -7.61 Total: 11.84 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.81 Total: 6.02 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.12 Total: -61.41 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: 0.17 Total: -22.01 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -38.02 -6.93 -44.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272680430.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.352 kcal (2) G-P(sol) polarization free energy of solvation -38.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds