Wall clock time and date at job start Tue Mar 31 2020 19:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47410 * 2 1 4 4 C 1.53004 * 109.47525 * 119.99734 * 2 1 3 5 5 C 1.52993 * 109.47360 * 184.99971 * 4 2 1 6 6 N 1.46905 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46943 * 180.02562 * 7 6 5 9 9 O 1.21292 * 120.00024 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99767 * 180.02562 * 8 7 6 11 11 C 1.37102 * 120.00095 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99386 * 359.97438 * 11 10 8 13 13 C 1.38941 * 120.00393 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00397 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00009 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47309 * 89.99758 * 15 13 11 17 17 H 1.48496 * 109.47518 * 209.99884 * 15 13 11 18 18 H 1.48503 * 109.47255 * 329.99853 * 15 13 11 19 19 N 1.46500 * 109.47120 * 239.99886 * 2 1 3 20 20 C 1.34779 * 120.00042 * 85.00050 * 19 2 1 21 21 O 1.21276 * 119.99621 * 359.97438 * 20 19 2 22 22 C 1.50700 * 120.00130 * 179.97438 * 20 19 2 23 23 C 1.50695 * 109.47283 * 179.97438 * 22 20 19 24 24 C 1.39870 * 126.03979 * 269.69313 * 23 22 20 25 25 N 1.30840 * 108.20072 * 179.81639 * 24 23 22 26 26 N 1.40086 * 108.20596 * 0.43820 * 25 24 23 27 27 C 1.46500 * 126.03743 * 179.69774 * 26 25 24 28 28 C 1.34952 * 107.92315 * 359.71894 * 26 25 24 29 29 H 1.09005 * 109.47161 * 299.99783 * 1 2 3 30 30 H 1.08995 * 109.47284 * 60.00507 * 1 2 3 31 31 H 1.09000 * 109.46886 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46514 * 64.99866 * 4 2 1 33 33 H 1.08998 * 109.46924 * 305.00346 * 4 2 1 34 34 H 1.09001 * 109.47393 * 60.00433 * 5 4 2 35 35 H 1.08998 * 109.47408 * 300.00078 * 5 4 2 36 36 H 1.00901 * 110.99869 * 56.04956 * 6 5 4 37 37 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 38 38 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 39 39 H 0.96997 * 120.00713 * 359.97438 * 10 8 7 40 40 H 0.97001 * 120.00755 * 180.02562 * 14 13 11 41 41 H 0.96995 * 120.00031 * 264.99706 * 19 2 1 42 42 H 1.09003 * 109.47200 * 300.00282 * 22 20 19 43 43 H 1.09000 * 109.47091 * 59.99943 * 22 20 19 44 44 H 1.07996 * 125.89936 * 0.02562 * 24 23 22 45 45 H 1.09000 * 109.47205 * 270.02615 * 27 26 25 46 46 H 1.09003 * 109.46897 * 30.02538 * 27 26 25 47 47 H 1.08999 * 109.46895 * 150.02385 * 27 26 25 48 48 H 1.08000 * 126.12283 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0546 -1.3062 2.5128 7 6 5.5181 -1.2226 2.6083 8 6 5.9826 -1.9435 3.8475 9 8 5.1740 -2.4743 4.5794 10 7 7.2964 -1.9976 4.1430 11 6 7.7191 -2.6530 5.2706 12 1 6.9990 -3.1256 5.9223 13 6 9.0736 -2.7092 5.5750 14 7 9.4786 -3.3370 6.6561 15 14 10.3190 -1.8925 4.4475 16 1 10.5336 -0.4886 4.8814 17 1 11.6048 -2.6324 4.5116 18 1 9.8085 -1.9070 3.0531 19 7 2.0183 -0.6906 -1.1962 20 6 2.1470 -0.0183 -2.3572 21 8 1.8581 1.1583 -2.4117 22 6 2.6499 -0.7286 -3.5875 23 6 2.6999 0.2395 -4.7413 24 6 1.6672 0.4898 -5.6508 25 7 2.0828 1.3915 -6.5030 26 7 3.3985 1.7366 -6.1682 27 6 4.2403 2.7078 -6.8712 28 6 3.7538 1.0160 -5.0838 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 3.8532 0.4370 1.3574 35 1 3.9995 -1.0727 0.4260 36 1 3.7452 -2.2665 2.5272 37 1 5.9666 -1.6858 1.7294 38 1 5.8196 -0.1765 2.6615 39 1 7.9431 -1.5729 3.5580 40 1 10.4242 -3.3759 6.8689 41 1 2.2490 -1.6317 -1.1526 42 1 3.6492 -1.1204 -3.3979 43 1 1.9777 -1.5509 -3.8325 44 1 0.6937 0.0222 -5.6480 45 1 4.8004 2.2014 -7.6573 46 1 3.6116 3.4807 -7.3133 47 1 4.9352 3.1640 -6.1661 48 1 4.7084 1.0523 -4.5800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272680430.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:21 Heat of formation + Delta-G solvation = -25.831915 kcal Electronic energy + Delta-G solvation = -27822.675314 eV Core-core repulsion = 23720.082696 eV Total energy + Delta-G solvation = -4102.592617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.14187 -40.61604 -40.25832 -37.89510 -36.25797 -35.68380 -34.51739 -33.74003 -33.11539 -32.10197 -30.35706 -29.06010 -27.85992 -26.67090 -25.56603 -23.38399 -22.42795 -22.02166 -21.53980 -21.24187 -20.85613 -20.23343 -18.01068 -17.80419 -17.75325 -17.24552 -16.87385 -16.63089 -16.23042 -16.02000 -15.70970 -15.42531 -15.22686 -15.14445 -14.95349 -14.64219 -14.47829 -14.19943 -14.01394 -13.92029 -13.79776 -13.52033 -13.43949 -13.29494 -13.10805 -12.92900 -12.79616 -12.58762 -12.40169 -12.20572 -12.01375 -11.94806 -11.73500 -11.51920 -11.50263 -10.77852 -10.43132 -10.34087 -10.23736 -9.96847 -9.28632 -9.27112 -8.40166 -6.01211 0.98936 1.30932 1.37077 1.45700 1.70401 1.79527 1.84623 1.96983 2.24171 2.53168 2.73613 3.16173 3.40685 3.67263 3.92537 4.01161 4.05639 4.13278 4.19881 4.25186 4.31408 4.39077 4.43405 4.45993 4.49188 4.54315 4.55738 4.66690 4.67718 4.73886 4.84407 4.88887 4.91985 5.01365 5.18016 5.21210 5.24680 5.36313 5.53912 5.68819 5.72889 5.92381 6.08150 6.17009 6.45811 6.61013 6.74908 6.76247 6.89285 7.41073 7.47017 7.97723 8.77411 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012506 B = 0.001889 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.432889 B =14821.146141 C =16695.734636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.151 3.849 3 H 0.067 0.933 4 C -0.115 4.115 5 C 0.065 3.935 6 N -0.689 5.689 7 C 0.063 3.937 8 C 0.448 3.552 9 O -0.614 6.614 10 N -0.591 5.591 11 C -0.329 4.329 12 H 0.055 0.945 13 C -0.016 4.016 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.259 1.259 17 H -0.275 1.275 18 H -0.229 1.229 19 N -0.716 5.716 20 C 0.512 3.488 21 O -0.583 6.583 22 C -0.053 4.053 23 C -0.236 4.236 24 C 0.048 3.952 25 N -0.343 5.343 26 N -0.384 5.384 27 C 0.093 3.907 28 C 0.063 3.937 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.347 0.653 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.390 0.610 40 H 0.279 0.721 41 H 0.414 0.586 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.193 0.807 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.109 0.891 48 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 8.503 -30.028 32.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.045 3.955 3 H 0.085 0.915 4 C -0.153 4.153 5 C -0.064 4.064 6 N -0.322 5.322 7 C -0.069 4.069 8 C 0.236 3.764 9 O -0.499 6.499 10 N -0.233 5.233 11 C -0.458 4.458 12 H 0.073 0.927 13 C -0.215 4.215 14 N -0.575 5.575 15 Si 0.785 3.215 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.152 1.152 19 N -0.369 5.369 20 C 0.299 3.701 21 O -0.463 6.463 22 C -0.093 4.093 23 C -0.248 4.248 24 C -0.138 4.138 25 N -0.165 5.165 26 N -0.166 5.166 27 C -0.047 4.047 28 C -0.084 4.084 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.166 0.834 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.225 0.775 40 H 0.088 0.912 41 H 0.251 0.749 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.210 0.790 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.127 0.873 48 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -11.410 10.287 -30.142 33.831 hybrid contribution 1.314 -1.138 0.272 1.759 sum -10.096 9.149 -29.871 32.831 Atomic orbital electron populations 1.22097 0.94868 1.02721 1.01858 1.20757 0.94126 0.96625 0.83965 0.91517 1.21763 0.94481 1.02030 0.97030 1.21992 0.95389 0.99061 0.89922 1.60023 1.08647 1.22019 1.41521 1.21608 0.89955 1.01545 0.93837 1.21034 0.81899 0.84100 0.89401 1.90544 1.54180 1.51109 1.54021 1.42039 1.07085 1.50804 1.23373 1.19010 0.93171 1.32099 1.01552 0.92694 1.26132 0.99154 0.97633 0.98575 1.69803 1.17283 1.43361 1.27065 0.85356 0.77636 0.78857 0.79611 1.18354 1.20047 1.15211 1.46082 1.67151 1.14667 1.09016 1.21260 0.76599 0.86939 0.85259 1.90699 1.51546 1.18400 1.85608 1.19957 1.05325 0.96575 0.87475 1.19735 0.94845 1.07651 1.02565 1.24090 1.00560 0.95862 0.93268 1.77255 0.94033 1.19252 1.25953 1.48742 1.10608 1.33495 1.23789 1.22143 0.93522 0.90683 0.98336 1.22815 1.01491 0.93767 0.90286 0.91247 0.93893 0.91159 0.89942 0.90171 0.91502 0.93404 0.83428 0.90322 0.87345 0.77471 0.91164 0.74919 0.85744 0.85793 0.78997 0.89280 0.89606 0.87279 0.78478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.48 71.98 0.68 -1.64 16 2 C 0.15 2.26 2.57 44.99 0.12 2.38 16 3 H 0.07 1.33 7.58 -2.39 -0.02 1.31 16 4 C -0.11 -1.72 5.01 30.59 0.15 -1.56 16 5 C 0.06 1.16 5.57 86.30 0.48 1.65 16 6 N -0.69 -18.40 6.13 -517.93 -3.17 -21.57 16 7 C 0.06 1.81 6.17 85.56 0.53 2.33 16 8 C 0.45 19.67 7.82 87.66 0.69 20.35 16 9 O -0.61 -33.41 15.78 -3.07 -0.05 -33.46 16 10 N -0.59 -27.30 5.09 -306.99 -1.56 -28.86 16 11 C -0.33 -19.09 10.16 84.04 0.85 -18.23 16 12 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 13 C -0.02 -0.90 5.50 84.92 0.47 -0.43 16 14 N -0.93 -55.92 13.96 21.66 0.30 -55.62 16 15 Si 0.97 38.01 27.73 68.60 1.90 39.91 16 16 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 17 H -0.28 -10.77 7.11 99.48 0.71 -10.07 16 18 H -0.23 -7.43 6.52 99.48 0.65 -6.79 16 19 N -0.72 -8.31 4.53 -442.54 -2.00 -10.31 16 20 C 0.51 8.10 7.79 87.66 0.68 8.78 16 21 O -0.58 -15.27 15.70 -3.02 -0.05 -15.32 16 22 C -0.05 -0.49 6.18 29.10 0.18 -0.31 16 23 C -0.24 -3.71 4.59 -20.15 -0.09 -3.80 16 24 C 0.05 0.89 11.96 85.24 1.02 1.91 16 25 N -0.34 -7.63 12.58 -57.02 -0.72 -8.34 16 26 N -0.38 -6.55 4.01 -369.56 -1.48 -8.03 16 27 C 0.09 0.78 11.47 127.77 1.47 2.25 16 28 C 0.06 0.94 11.40 83.54 0.95 1.89 16 29 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.05 0.68 7.75 -2.39 -0.02 0.66 16 36 H 0.35 9.62 8.43 -89.69 -0.76 8.87 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.39 14.75 5.76 -92.71 -0.53 14.22 16 40 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.41 2.46 8.60 -92.71 -0.80 1.66 16 42 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 45 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.20 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -89.67 407.71 0.19 -89.48 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: -1.15 Total: 36.56 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 8.17 Total: 15.56 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -8.64 Total: -132.74 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -0.10 Total: -48.78 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 1.90 Total: 39.91 kcal Total: -89.67 0.19 -89.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272680430.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.650 kcal (2) G-P(sol) polarization free energy of solvation -89.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds