Wall clock time and date at job start Tue Mar 31 2020 20:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46898 * 2 1 4 4 C 1.53004 * 109.47522 * 240.00305 * 2 1 3 5 5 N 1.46895 * 109.47035 * 184.99817 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47109 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99996 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00405 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99358 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99517 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00588 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.47149 * 89.99828 * 14 12 10 16 16 H 1.48498 * 109.47388 * 209.99797 * 14 12 10 17 17 H 1.48501 * 109.46930 * 330.00192 * 14 12 10 18 18 N 1.46503 * 109.47499 * 119.99933 * 2 1 3 19 19 C 1.34771 * 120.00107 * 275.00916 * 18 2 1 20 20 O 1.21283 * 119.99913 * 359.97438 * 19 18 2 21 21 C 1.50700 * 120.00220 * 179.97438 * 19 18 2 22 22 C 1.52998 * 109.47450 * 179.97438 * 21 19 18 23 23 C 1.50696 * 109.47124 * 180.02562 * 22 21 19 24 24 N 1.30500 * 125.64966 * 269.69055 * 23 22 21 25 25 C 1.34127 * 109.25806 * 179.89460 * 24 23 22 26 26 C 1.34664 * 108.01940 * 0.37132 * 25 24 23 27 27 N 1.35041 * 125.65341 * 90.00292 * 23 22 21 28 28 C 1.46503 * 126.39689 * 359.93603 * 27 23 22 29 29 H 1.08997 * 109.47549 * 299.99706 * 1 2 3 30 30 H 1.08994 * 109.47227 * 60.00484 * 1 2 3 31 31 H 1.09003 * 109.46643 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46863 * 64.99659 * 4 2 1 33 33 H 1.09002 * 109.46661 * 304.99836 * 4 2 1 34 34 H 1.00902 * 111.00273 * 303.95364 * 5 4 2 35 35 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 36 36 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 37 37 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 38 38 H 0.96997 * 120.00211 * 180.02562 * 13 12 10 39 39 H 0.97002 * 119.99507 * 94.99584 * 18 2 1 40 40 H 1.09000 * 109.47185 * 300.00092 * 21 19 18 41 41 H 1.09004 * 109.47299 * 59.99647 * 21 19 18 42 42 H 1.09001 * 109.46831 * 299.99701 * 22 21 19 43 43 H 1.08997 * 109.47173 * 59.99968 * 22 21 19 44 44 H 1.08003 * 125.98624 * 180.11247 * 25 24 23 45 45 H 1.08006 * 126.59162 * 179.74262 * 26 25 24 46 46 H 1.08996 * 109.46956 * 90.00386 * 28 27 23 47 47 H 1.09003 * 109.47297 * 210.00272 * 28 27 23 48 48 H 1.09001 * 109.47113 * 330.00401 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5041 -0.8265 -1.1904 6 6 4.0304 -1.5157 -2.3762 7 6 5.5318 -1.6041 -2.2807 8 8 6.1068 -1.1391 -1.3192 9 7 6.2356 -2.1997 -3.2637 10 6 7.6015 -2.2806 -3.1766 11 1 8.1135 -1.8666 -2.3205 12 6 8.3270 -2.8952 -4.1899 13 7 9.6362 -2.9722 -4.1066 14 14 7.4415 -3.6118 -5.6702 15 1 7.3212 -2.5738 -6.7254 16 1 8.2125 -4.7663 -6.1972 17 1 6.0866 -4.0649 -5.2649 18 7 2.0184 -0.6906 1.1962 19 6 2.1470 -0.0183 2.3571 20 8 1.8588 1.1585 2.4115 21 6 2.6489 -0.7288 3.5877 22 6 2.7009 0.2544 4.7588 23 6 3.2034 -0.4560 5.9892 24 7 2.4605 -1.0655 6.8722 25 6 3.2454 -1.5845 7.8280 26 6 4.5225 -1.2782 7.5302 27 7 4.4964 -0.5623 6.3638 28 6 5.6550 -0.0143 5.6541 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1582 -2.1369 33 1 1.6055 -1.7198 -1.2952 34 1 3.9280 0.0827 -1.0823 35 1 3.6097 -2.5197 -2.4295 36 1 3.7558 -0.9586 -3.2720 37 1 5.7757 -2.5718 -4.0324 38 1 10.1428 -3.4009 -4.8141 39 1 2.2490 -1.6318 1.1525 40 1 1.9761 -1.5507 3.8325 41 1 3.6481 -1.1213 3.3986 42 1 3.3740 1.0760 4.5138 43 1 1.7019 0.6472 4.9481 44 1 2.9113 -2.1457 8.6882 45 1 5.3989 -1.5455 8.1021 46 1 5.8585 0.9939 6.0149 47 1 6.5241 -0.6470 5.8342 48 1 5.4443 0.0180 4.5851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274857812.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:56 Heat of formation + Delta-G solvation = -13.374647 kcal Electronic energy + Delta-G solvation = -28359.502712 eV Core-core repulsion = 24257.450282 eV Total energy + Delta-G solvation = -4102.052430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.27249 -39.90605 -38.55134 -36.84626 -34.41894 -34.25094 -33.79190 -33.76012 -31.72607 -31.17352 -29.00499 -27.80719 -27.23637 -25.27207 -24.76895 -23.15706 -21.57026 -21.42209 -20.42692 -19.82578 -19.43523 -18.41454 -17.53995 -16.89430 -16.71052 -16.00242 -15.89124 -15.69813 -15.23585 -14.94634 -14.75390 -14.42855 -14.19584 -14.02144 -13.82829 -13.48607 -13.35089 -13.26023 -13.18364 -12.98943 -12.75528 -12.70109 -12.42419 -12.28341 -12.17587 -12.11565 -11.76146 -11.73448 -11.34881 -11.21316 -11.01118 -10.64696 -10.15195 -10.03240 -9.90605 -9.78895 -9.62982 -9.08412 -8.67106 -8.56069 -8.28140 -8.22244 -6.36627 -3.88304 1.82349 2.57644 2.63320 2.91037 2.97780 3.02046 3.10815 3.19255 3.67591 3.96707 4.05393 4.22623 4.48909 4.57350 4.66519 4.73046 4.77788 4.86287 4.87991 4.95560 5.05735 5.14978 5.17357 5.20936 5.22925 5.34459 5.38128 5.43031 5.49409 5.53184 5.55994 5.71239 5.73281 5.84555 5.85537 5.85888 6.01140 6.09324 6.46662 6.57162 6.95980 6.96577 7.44648 7.51669 7.52676 7.92956 8.08353 8.22070 8.53774 8.89095 9.36537 9.76312 10.76431 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.002282 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.828706 B =12268.720920 C =14393.059588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.086 0.914 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.048 3.952 7 C 0.449 3.551 8 O -0.565 6.565 9 N -0.590 5.590 10 C -0.306 4.306 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.269 1.269 18 N -0.707 5.707 19 C 0.519 3.481 20 O -0.550 6.550 21 C -0.136 4.136 22 C -0.017 4.017 23 C 0.208 3.792 24 N -0.490 5.490 25 C -0.031 4.031 26 C -0.060 4.060 27 N -0.456 5.456 28 C 0.066 3.934 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.352 0.648 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.370 0.630 38 H 0.274 0.726 39 H 0.406 0.594 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.169 0.831 45 H 0.173 0.827 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.910 2.832 13.603 21.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.104 0.896 4 C -0.083 4.083 5 N -0.300 5.300 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.447 6.447 9 N -0.229 5.229 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.520 5.520 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.201 1.201 17 H -0.195 1.195 18 N -0.358 5.358 19 C 0.306 3.694 20 O -0.428 6.428 21 C -0.177 4.177 22 C -0.056 4.056 23 C -0.055 4.055 24 N -0.209 5.209 25 C -0.179 4.179 26 C -0.193 4.193 27 N -0.139 5.139 28 C -0.076 4.076 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.172 0.828 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.241 0.759 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.186 0.814 45 H 0.191 0.809 46 H 0.097 0.903 47 H 0.107 0.893 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.217 3.358 14.473 21.994 hybrid contribution 0.598 -0.571 -1.938 2.107 sum -15.619 2.787 12.535 20.220 Atomic orbital electron populations 1.22138 0.94963 1.02250 1.02662 1.20927 0.93622 0.97476 0.84007 0.89553 1.22325 0.89289 1.00777 0.95865 1.60048 1.03238 1.26985 1.39680 1.21715 0.95041 1.00053 0.91706 1.19696 0.87926 0.84187 0.84712 1.90563 1.71016 1.50585 1.32566 1.42213 1.07871 1.52897 1.19956 1.19419 0.79501 1.36082 1.08439 0.86316 1.25050 0.95455 0.97604 0.98077 1.69619 1.05084 1.43316 1.34026 0.86664 0.79589 0.79820 0.83258 1.19641 1.20136 1.19486 1.45832 1.66625 1.14474 1.08900 1.20455 0.77219 0.87169 0.84586 1.90693 1.50758 1.16023 1.85298 1.21608 1.03874 0.99752 0.92446 1.19684 1.03681 0.95761 0.86472 1.23258 0.79782 1.03175 0.99250 1.70247 1.33200 1.13770 1.03672 1.22293 0.89482 1.05430 1.00713 1.22724 1.00924 1.04127 0.91526 1.45348 1.07946 1.40943 1.19642 1.22145 0.87017 1.00097 0.98363 0.91772 0.91680 0.92318 0.93863 0.90420 0.82828 0.89460 0.93706 0.79686 0.91570 0.75896 0.88213 0.88724 0.89553 0.88006 0.81402 0.80928 0.90300 0.89269 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 2 C 0.14 1.45 2.81 -67.93 -0.19 1.26 16 3 H 0.09 1.03 7.58 -51.93 -0.39 0.63 16 4 C 0.05 0.47 5.24 -3.82 -0.02 0.45 16 5 N -0.67 -9.14 5.85 -115.06 -0.67 -9.81 16 6 C 0.05 0.72 6.17 -4.97 -0.03 0.69 16 7 C 0.45 9.70 7.82 -10.98 -0.09 9.62 16 8 O -0.57 -14.54 15.78 5.54 0.09 -14.46 16 9 N -0.59 -13.57 5.09 -10.96 -0.06 -13.62 16 10 C -0.31 -8.45 10.16 -14.93 -0.15 -8.60 16 11 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 12 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 13 N -0.88 -25.29 13.96 55.50 0.77 -24.52 16 14 Si 0.88 18.90 27.74 -169.99 -4.71 14.19 16 15 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 18 N -0.71 -7.27 4.80 -53.80 -0.26 -7.53 16 19 C 0.52 6.01 7.79 -10.99 -0.09 5.92 16 20 O -0.55 -8.07 15.64 5.55 0.09 -7.98 16 21 C -0.14 -1.30 5.68 -27.88 -0.16 -1.45 16 22 C -0.02 -0.17 4.60 -27.89 -0.13 -0.30 16 23 C 0.21 2.36 7.16 -155.42 -1.11 1.24 16 24 N -0.49 -6.34 11.25 -10.82 -0.12 -6.46 16 25 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 26 C -0.06 -0.55 11.58 -16.56 -0.19 -0.74 16 27 N -0.46 -4.41 3.15 -121.28 -0.38 -4.80 16 28 C 0.07 0.45 10.79 59.85 0.65 1.10 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.35 5.34 8.43 -39.29 -0.33 5.01 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.37 7.45 5.76 -40.82 -0.24 7.22 16 38 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.41 3.77 8.60 -40.82 -0.35 3.42 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 0.85 7.66 -51.93 -0.40 0.45 16 43 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 44 H 0.17 1.36 8.06 -52.48 -0.42 0.94 16 45 H 0.17 1.03 8.06 -52.48 -0.42 0.60 16 46 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.09 0.63 7.66 -51.93 -0.40 0.24 16 LS Contribution 405.81 15.07 6.12 6.12 Total: -1.00 -35.88 405.81 -8.19 -44.07 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -7.58 Total: 16.17 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -1.47 Total: 8.65 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -0.72 Total: -66.74 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: 0.17 Total: -22.44 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.71 Total: 14.19 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.88 -8.19 -44.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274857812.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.693 kcal (2) G-P(sol) polarization free energy of solvation -35.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds