Wall clock time and date at job start Tue Mar 31 2020 20:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46898 * 2 1 4 4 C 1.53004 * 109.47522 * 240.00305 * 2 1 3 5 5 N 1.46895 * 109.47035 * 184.99817 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47109 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99996 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00405 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99358 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99517 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00588 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.47149 * 89.99828 * 14 12 10 16 16 H 1.48498 * 109.47388 * 209.99797 * 14 12 10 17 17 H 1.48501 * 109.46930 * 330.00192 * 14 12 10 18 18 N 1.46503 * 109.47499 * 119.99933 * 2 1 3 19 19 C 1.34771 * 120.00107 * 275.00916 * 18 2 1 20 20 O 1.21283 * 119.99913 * 359.97438 * 19 18 2 21 21 C 1.50700 * 120.00220 * 179.97438 * 19 18 2 22 22 C 1.52998 * 109.47450 * 179.97438 * 21 19 18 23 23 C 1.50696 * 109.47124 * 180.02562 * 22 21 19 24 24 N 1.30500 * 125.64966 * 269.69055 * 23 22 21 25 25 C 1.34127 * 109.25806 * 179.89460 * 24 23 22 26 26 C 1.34664 * 108.01940 * 0.37132 * 25 24 23 27 27 N 1.35041 * 125.65341 * 90.00292 * 23 22 21 28 28 C 1.46503 * 126.39689 * 359.93603 * 27 23 22 29 29 H 1.08997 * 109.47549 * 299.99706 * 1 2 3 30 30 H 1.08994 * 109.47227 * 60.00484 * 1 2 3 31 31 H 1.09003 * 109.46643 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46863 * 64.99659 * 4 2 1 33 33 H 1.09002 * 109.46661 * 304.99836 * 4 2 1 34 34 H 1.00902 * 111.00273 * 303.95364 * 5 4 2 35 35 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 36 36 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 37 37 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 38 38 H 0.96997 * 120.00211 * 180.02562 * 13 12 10 39 39 H 0.97002 * 119.99507 * 94.99584 * 18 2 1 40 40 H 1.09000 * 109.47185 * 300.00092 * 21 19 18 41 41 H 1.09004 * 109.47299 * 59.99647 * 21 19 18 42 42 H 1.09001 * 109.46831 * 299.99701 * 22 21 19 43 43 H 1.08997 * 109.47173 * 59.99968 * 22 21 19 44 44 H 1.08003 * 125.98624 * 180.11247 * 25 24 23 45 45 H 1.08006 * 126.59162 * 179.74262 * 26 25 24 46 46 H 1.08996 * 109.46956 * 90.00386 * 28 27 23 47 47 H 1.09003 * 109.47297 * 210.00272 * 28 27 23 48 48 H 1.09001 * 109.47113 * 330.00401 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5041 -0.8265 -1.1904 6 6 4.0304 -1.5157 -2.3762 7 6 5.5318 -1.6041 -2.2807 8 8 6.1068 -1.1391 -1.3192 9 7 6.2356 -2.1997 -3.2637 10 6 7.6015 -2.2806 -3.1766 11 1 8.1135 -1.8666 -2.3205 12 6 8.3270 -2.8952 -4.1899 13 7 9.6362 -2.9722 -4.1066 14 14 7.4415 -3.6118 -5.6702 15 1 7.3212 -2.5738 -6.7254 16 1 8.2125 -4.7663 -6.1972 17 1 6.0866 -4.0649 -5.2649 18 7 2.0184 -0.6906 1.1962 19 6 2.1470 -0.0183 2.3571 20 8 1.8588 1.1585 2.4115 21 6 2.6489 -0.7288 3.5877 22 6 2.7009 0.2544 4.7588 23 6 3.2034 -0.4560 5.9892 24 7 2.4605 -1.0655 6.8722 25 6 3.2454 -1.5845 7.8280 26 6 4.5225 -1.2782 7.5302 27 7 4.4964 -0.5623 6.3638 28 6 5.6550 -0.0143 5.6541 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1582 -2.1369 33 1 1.6055 -1.7198 -1.2952 34 1 3.9280 0.0827 -1.0823 35 1 3.6097 -2.5197 -2.4295 36 1 3.7558 -0.9586 -3.2720 37 1 5.7757 -2.5718 -4.0324 38 1 10.1428 -3.4009 -4.8141 39 1 2.2490 -1.6318 1.1525 40 1 1.9761 -1.5507 3.8325 41 1 3.6481 -1.1213 3.3986 42 1 3.3740 1.0760 4.5138 43 1 1.7019 0.6472 4.9481 44 1 2.9113 -2.1457 8.6882 45 1 5.3989 -1.5455 8.1021 46 1 5.8585 0.9939 6.0149 47 1 6.5241 -0.6470 5.8342 48 1 5.4443 0.0180 4.5851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274857812.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:55 Heat of formation + Delta-G solvation = -41.812405 kcal Electronic energy + Delta-G solvation = -28360.735866 eV Core-core repulsion = 24257.450282 eV Total energy + Delta-G solvation = -4103.285583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.03875 -40.84064 -40.24523 -37.85806 -36.05911 -35.12252 -35.00404 -34.61927 -33.72826 -32.05314 -29.78926 -29.06289 -27.88639 -26.64368 -25.77096 -24.41415 -22.32550 -22.23565 -21.34449 -21.22914 -20.61431 -20.24176 -18.38000 -17.97997 -17.58730 -17.38199 -16.80808 -16.68522 -16.57815 -16.25531 -15.79099 -15.45355 -15.34526 -15.04755 -14.80825 -14.75708 -14.49981 -14.30417 -14.14931 -13.99355 -13.90881 -13.70089 -13.41126 -13.23910 -13.11888 -12.98445 -12.97476 -12.79316 -12.65176 -12.40670 -12.17467 -11.97787 -11.80879 -11.50201 -10.97848 -10.86751 -10.56463 -10.42673 -10.24001 -9.95634 -9.34506 -9.31504 -8.40779 -6.01522 1.07016 1.30883 1.36246 1.45307 1.71238 1.89264 1.97855 2.10175 2.23648 2.36427 2.73105 3.16203 3.38235 3.46765 3.79810 3.85027 3.88923 3.99872 4.11823 4.16230 4.20037 4.26683 4.36810 4.41552 4.49321 4.50903 4.59576 4.61945 4.66139 4.68051 4.70419 4.79261 4.83367 4.93019 5.02428 5.09836 5.31233 5.35652 5.53144 5.63175 5.84827 5.90498 6.04087 6.22236 6.32399 6.60526 6.65938 6.89303 7.14002 7.34157 7.41296 7.98100 8.76842 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.002282 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.828706 B =12268.720920 C =14393.059588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.144 3.856 3 H 0.063 0.937 4 C 0.055 3.945 5 N -0.682 5.682 6 C 0.062 3.938 7 C 0.448 3.552 8 O -0.614 6.614 9 N -0.592 5.592 10 C -0.327 4.327 11 H 0.055 0.945 12 C -0.017 4.017 13 N -0.936 5.936 14 Si 0.965 3.035 15 H -0.258 1.258 16 H -0.277 1.277 17 H -0.229 1.229 18 N -0.701 5.701 19 C 0.517 3.483 20 O -0.585 6.585 21 C -0.124 4.124 22 C -0.009 4.009 23 C 0.191 3.809 24 N -0.525 5.525 25 C -0.057 4.057 26 C -0.052 4.052 27 N -0.458 5.458 28 C 0.061 3.939 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.340 0.660 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.390 0.610 38 H 0.278 0.722 39 H 0.413 0.587 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.186 0.814 45 H 0.206 0.794 46 H 0.090 0.910 47 H 0.106 0.894 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.210 1.335 11.796 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.074 4.074 5 N -0.314 5.314 6 C -0.070 4.070 7 C 0.236 3.764 8 O -0.498 6.498 9 N -0.234 5.234 10 C -0.456 4.456 11 H 0.073 0.927 12 C -0.215 4.215 13 N -0.576 5.576 14 Si 0.785 3.215 15 H -0.183 1.183 16 H -0.202 1.202 17 H -0.152 1.152 18 N -0.352 5.352 19 C 0.304 3.696 20 O -0.466 6.466 21 C -0.165 4.165 22 C -0.048 4.048 23 C -0.072 4.072 24 N -0.245 5.245 25 C -0.204 4.204 26 C -0.185 4.185 27 N -0.140 5.140 28 C -0.080 4.080 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.158 0.842 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.225 0.775 38 H 0.088 0.912 39 H 0.249 0.751 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.203 0.797 45 H 0.223 0.777 46 H 0.109 0.891 47 H 0.125 0.875 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.553 1.845 12.655 22.534 hybrid contribution 1.371 -0.030 -1.229 1.841 sum -17.182 1.815 11.426 20.714 Atomic orbital electron populations 1.22057 0.93418 1.03158 1.02528 1.20967 0.94711 0.96359 0.84070 0.91838 1.22374 0.86639 1.02223 0.96149 1.60053 1.05471 1.26384 1.39449 1.21645 0.89309 1.02529 0.93497 1.21053 0.90848 0.81475 0.83026 1.90546 1.72978 1.51896 1.34422 1.42047 1.06089 1.53927 1.21326 1.18992 0.81966 1.37338 1.07331 0.92709 1.26130 0.96198 0.97376 1.01833 1.69806 1.07518 1.44552 1.35758 0.85364 0.79793 0.78759 0.77604 1.18286 1.20241 1.15177 1.45850 1.65904 1.14721 1.08715 1.20754 0.76716 0.86773 0.85367 1.90675 1.52478 1.17585 1.85887 1.21521 1.04200 0.99488 0.91316 1.19565 1.02871 0.95813 0.86585 1.23304 0.80604 1.03783 0.99475 1.70185 1.34664 1.14851 1.04770 1.22736 0.90149 1.06307 1.01234 1.23271 1.01567 1.02624 0.91038 1.45552 1.08030 1.40586 1.19837 1.22344 0.86602 1.01105 0.97995 0.93674 0.90082 0.90814 0.91908 0.88288 0.84167 0.86347 0.90519 0.77466 0.91207 0.75109 0.87354 0.88147 0.89641 0.89305 0.79732 0.77702 0.89116 0.87506 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.48 71.98 0.68 -1.58 16 2 C 0.14 2.65 2.81 44.99 0.13 2.78 16 3 H 0.06 1.49 7.58 -2.39 -0.02 1.47 16 4 C 0.06 0.89 5.24 86.31 0.45 1.34 16 5 N -0.68 -17.01 5.85 -517.92 -3.03 -20.04 16 6 C 0.06 1.65 6.17 85.56 0.53 2.18 16 7 C 0.45 18.94 7.82 87.66 0.69 19.62 16 8 O -0.61 -32.41 15.78 -3.08 -0.05 -32.45 16 9 N -0.59 -26.60 5.09 -306.98 -1.56 -28.16 16 10 C -0.33 -18.64 10.16 84.04 0.85 -17.79 16 11 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 12 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 13 N -0.94 -55.52 13.96 21.66 0.30 -55.22 16 14 Si 0.96 37.53 27.74 68.60 1.90 39.43 16 15 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 16 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 17 H -0.23 -7.33 6.52 99.48 0.65 -6.68 16 18 N -0.70 -13.72 4.80 -442.53 -2.12 -15.85 16 19 C 0.52 12.04 7.79 87.66 0.68 12.72 16 20 O -0.59 -17.73 15.64 -3.04 -0.05 -17.78 16 21 C -0.12 -2.39 5.68 29.85 0.17 -2.22 16 22 C -0.01 -0.19 4.60 29.85 0.14 -0.05 16 23 C 0.19 4.38 7.16 138.13 0.99 5.37 16 24 N -0.52 -13.78 11.25 -188.14 -2.12 -15.90 16 25 C -0.06 -1.19 11.87 83.52 0.99 -0.20 16 26 C -0.05 -0.88 11.58 83.08 0.96 0.08 16 27 N -0.46 -8.58 3.15 -537.61 -1.69 -10.28 16 28 C 0.06 0.78 10.79 127.77 1.38 2.16 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.34 9.97 8.43 -89.69 -0.76 9.21 16 35 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.39 14.31 5.76 -92.71 -0.53 13.77 16 38 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.41 6.97 8.60 -92.71 -0.80 6.18 16 40 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.09 1.78 7.66 -2.39 -0.02 1.76 16 43 H 0.09 2.09 8.10 -2.39 -0.02 2.07 16 44 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 45 H 0.21 1.93 8.06 -2.91 -0.02 1.91 16 46 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.09 1.21 7.66 -2.39 -0.02 1.19 16 Total: -1.00 -84.60 405.81 -0.47 -85.07 By element: Atomic # 1 Polarization: 48.37 SS G_CDS: -1.15 Total: 47.22 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: 9.11 Total: 23.97 kcal Atomic # 7 Polarization: -135.22 SS G_CDS: -10.23 Total: -145.45 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -0.10 Total: -50.24 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 1.90 Total: 39.43 kcal Total: -84.60 -0.47 -85.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274857812.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.255 kcal (2) G-P(sol) polarization free energy of solvation -84.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds