Wall clock time and date at job start Tue Mar 31 2020 20:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47081 * 2 1 4 4 N 1.46503 * 109.46850 * 119.99831 * 2 1 3 5 5 C 1.34254 * 125.75484 * 275.29002 * 4 2 1 6 6 C 1.38046 * 107.41489 * 180.16051 * 5 4 2 7 7 C 1.47432 * 126.41195 * 179.83451 * 6 5 4 8 8 O 1.21603 * 120.00137 * 359.71659 * 7 6 5 9 9 N 1.34777 * 119.99549 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99724 * 179.72679 * 9 7 6 11 11 H 1.08994 * 109.47052 * 35.00246 * 10 9 7 12 12 C 1.53008 * 109.46864 * 275.00347 * 10 9 7 13 13 C 1.52995 * 109.47024 * 155.00353 * 10 9 7 14 14 N 1.46898 * 109.47107 * 304.99860 * 13 10 9 15 15 C 1.46898 * 110.99995 * 180.02562 * 14 13 10 16 16 C 1.50707 * 109.47178 * 180.02562 * 15 14 13 17 17 O 1.21288 * 119.99638 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99842 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99550 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00357 * 0.02562 * 19 18 16 21 21 C 1.38957 * 119.99601 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99701 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00265 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47102 * 89.99649 * 23 21 19 25 25 H 1.48495 * 109.47310 * 209.99800 * 23 21 19 26 26 H 1.48507 * 109.46951 * 330.00002 * 23 21 19 27 27 C 1.41285 * 107.17066 * 359.57646 * 6 5 4 28 28 N 1.30443 * 108.02583 * 0.26318 * 27 6 5 29 29 H 1.08996 * 109.47466 * 300.00115 * 1 2 3 30 30 H 1.09007 * 109.47170 * 60.00185 * 1 2 3 31 31 H 1.09003 * 109.47476 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47466 * 239.99885 * 2 1 3 33 33 H 1.09004 * 109.46764 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47004 * 299.99960 * 3 2 1 35 35 H 1.09000 * 109.46843 * 60.00094 * 3 2 1 36 36 H 1.07997 * 126.29481 * 0.03767 * 5 4 2 37 37 H 0.97000 * 120.00483 * 359.73112 * 9 7 6 38 38 H 1.08991 * 109.47246 * 60.00403 * 12 10 9 39 39 H 1.08998 * 109.46377 * 180.02562 * 12 10 9 40 40 H 1.09002 * 109.46916 * 299.99788 * 12 10 9 41 41 H 1.09005 * 109.47349 * 64.99828 * 13 10 9 42 42 H 1.09002 * 109.47351 * 184.99998 * 13 10 9 43 43 H 1.00900 * 110.99902 * 303.95714 * 14 13 10 44 44 H 1.08996 * 109.47477 * 299.99786 * 15 14 13 45 45 H 1.09004 * 109.47245 * 60.00092 * 15 14 13 46 46 H 0.97002 * 120.00054 * 359.97438 * 18 16 15 47 47 H 0.97001 * 119.99664 * 180.02562 * 22 21 19 48 48 H 1.08007 * 125.98828 * 180.29348 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1850 -0.1376 2.4082 6 6 2.6629 -1.1223 3.2494 7 6 2.9947 -0.9680 4.6776 8 8 2.8582 0.1116 5.2204 9 7 3.4543 -2.0223 5.3803 10 6 3.7897 -1.8675 6.7980 11 1 3.1000 -1.1609 7.2595 12 6 5.2210 -1.3429 6.9291 13 6 3.6768 -3.2224 7.4996 14 7 2.3376 -3.7816 7.2722 15 6 2.1922 -5.0853 7.9332 16 6 0.8091 -5.6267 7.6777 17 8 0.0222 -4.9893 7.0102 18 7 0.4468 -6.8190 8.1910 19 6 -0.8116 -7.3112 7.9590 20 1 -1.5124 -6.7437 7.3646 21 6 -1.1851 -8.5408 8.4878 22 7 -2.3911 -9.0128 8.2649 23 14 0.0271 -9.5227 9.5153 24 1 -0.1151 -9.1446 10.9443 25 1 -0.2505 -10.9728 9.3570 26 1 1.4108 -9.2311 9.0615 27 6 2.7688 -2.3070 2.4869 28 7 2.3837 -2.0394 1.2697 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.9842 0.8894 2.6754 37 1 3.5630 -2.8835 4.9474 38 1 5.3014 -0.3776 6.4293 39 1 5.4706 -1.2282 7.9839 40 1 5.9107 -2.0496 6.4676 41 1 4.4277 -3.9031 7.0982 42 1 3.8393 -3.0923 8.5695 43 1 1.6213 -3.1399 7.5773 44 1 2.9327 -5.7791 7.5353 45 1 2.3442 -4.9676 9.0062 46 1 1.0763 -7.3289 8.7246 47 1 -2.6519 -9.8710 8.6344 48 1 3.1087 -3.2663 2.8486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274986669.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:31 Heat of formation + Delta-G solvation = 3.474923 kcal Electronic energy + Delta-G solvation = -28569.082283 eV Core-core repulsion = 24467.760506 eV Total energy + Delta-G solvation = -4101.321777 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.55698 -39.38834 -38.43801 -36.60899 -36.06797 -34.28314 -33.67196 -31.67052 -31.42139 -30.60817 -29.69363 -27.80839 -27.72759 -25.08140 -24.18012 -23.06986 -22.44189 -21.22191 -20.17665 -20.06361 -19.36102 -18.38882 -18.01533 -16.58055 -16.16673 -15.74641 -15.71808 -15.22976 -15.20631 -14.88033 -14.76226 -14.42340 -14.08415 -14.00523 -13.92389 -13.37993 -13.22244 -13.16046 -13.05649 -12.68316 -12.67084 -12.61441 -12.43923 -12.21128 -12.04235 -11.87026 -11.71874 -11.67143 -11.64637 -11.16223 -11.11447 -10.92530 -10.59246 -9.96788 -9.76387 -9.72345 -9.56294 -9.03827 -8.69586 -8.58124 -8.19766 -8.14429 -6.30121 -3.81499 1.45895 2.09467 2.14408 3.02778 3.06859 3.15296 3.32719 3.57058 3.75484 4.02225 4.07672 4.11529 4.37164 4.53498 4.55974 4.64008 4.77727 4.85966 4.97734 5.03661 5.08589 5.11188 5.20188 5.21802 5.29112 5.30423 5.34443 5.42096 5.54734 5.57245 5.58192 5.63164 5.68143 5.70345 5.80836 5.93140 5.96116 6.08980 6.30910 6.61337 6.67919 7.05906 7.42591 7.54143 7.59298 7.72195 8.15730 8.42330 8.60869 8.96246 9.43500 9.84114 10.83077 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011841 B = 0.002357 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.126083 B =11876.032460 C =13697.182970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.151 3.849 3 C -0.167 4.167 4 N -0.357 5.357 5 C 0.126 3.874 6 C -0.290 4.290 7 C 0.599 3.401 8 O -0.561 6.561 9 N -0.704 5.704 10 C 0.148 3.852 11 H 0.087 0.913 12 C -0.161 4.161 13 C 0.048 3.952 14 N -0.666 5.666 15 C 0.048 3.952 16 C 0.449 3.551 17 O -0.562 6.562 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.086 3.914 28 N -0.298 5.298 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.183 0.817 37 H 0.404 0.596 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.353 0.647 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.172 17.735 -11.190 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.050 3.950 3 C -0.225 4.225 4 N -0.137 5.137 5 C -0.025 4.025 6 C -0.305 4.305 7 C 0.387 3.613 8 O -0.441 6.441 9 N -0.354 5.354 10 C 0.042 3.958 11 H 0.105 0.895 12 C -0.220 4.220 13 C -0.082 4.082 14 N -0.299 5.299 15 C -0.085 4.085 16 C 0.235 3.765 17 O -0.444 6.444 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.163 4.163 22 N -0.522 5.522 23 Si 0.707 3.293 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.102 4.102 28 N -0.117 5.117 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.200 0.800 37 H 0.239 0.761 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.172 0.828 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 15.291 18.066 -13.145 27.074 hybrid contribution 0.863 -0.967 2.450 2.772 sum 16.154 17.099 -10.695 25.840 Atomic orbital electron populations 1.22269 0.93131 1.03813 1.03366 1.21390 0.95220 0.92792 0.85577 1.22241 1.02419 0.93854 1.04026 1.48768 1.48866 1.07621 1.08403 1.22816 0.95509 0.99568 0.84632 1.20244 1.19739 0.94680 0.95825 1.17177 0.75729 0.83747 0.84637 1.90736 1.55331 1.26677 1.71390 1.45559 1.66567 1.12819 1.10464 1.20900 0.96599 0.96710 0.81570 0.89533 1.22142 0.95891 1.01816 1.02104 1.22324 0.92514 0.95097 0.98290 1.60051 1.03302 1.04402 1.62134 1.21714 0.97522 0.92468 0.96790 1.19720 0.88859 0.83114 0.84803 1.90581 1.53271 1.58980 1.41564 1.42210 1.14442 1.18333 1.48124 1.19430 0.88769 1.03298 1.31789 0.86318 1.25049 0.96389 0.96837 0.97979 1.69627 1.17933 1.19963 1.44664 0.86662 0.80896 0.80720 0.81036 1.19690 1.20198 1.19481 1.24095 0.96988 0.98797 0.90283 1.77188 1.21008 0.92597 1.20896 0.91604 0.90232 0.91234 0.87591 0.91343 0.89691 0.91225 0.79987 0.76116 0.91832 0.91738 0.92360 0.90437 0.93900 0.82758 0.89471 0.93753 0.79725 0.91637 0.79313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 9.52 37.15 0.35 -0.74 16 2 C 0.15 1.05 3.91 -67.93 -0.27 0.78 16 3 C -0.17 -0.77 8.83 37.16 0.33 -0.44 16 4 N -0.36 -3.73 3.49 -54.32 -0.19 -3.92 16 5 C 0.13 1.39 10.39 -16.56 -0.17 1.22 16 6 C -0.29 -3.65 6.13 -105.07 -0.64 -4.29 16 7 C 0.60 8.28 7.78 -12.52 -0.10 8.19 16 8 O -0.56 -9.32 16.56 5.27 0.09 -9.23 16 9 N -0.70 -8.26 4.79 -54.88 -0.26 -8.52 16 10 C 0.15 1.61 2.81 -67.93 -0.19 1.42 16 11 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 12 C -0.16 -1.45 9.48 37.16 0.35 -1.09 16 13 C 0.05 0.50 5.24 -3.83 -0.02 0.48 16 14 N -0.67 -9.72 5.85 -115.06 -0.67 -10.39 16 15 C 0.05 0.76 6.17 -4.97 -0.03 0.72 16 16 C 0.45 10.08 7.82 -10.98 -0.09 10.00 16 17 O -0.56 -15.11 15.78 5.55 0.09 -15.02 16 18 N -0.59 -14.01 5.09 -10.96 -0.06 -14.07 16 19 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 20 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 21 C 0.04 1.11 5.50 -17.46 -0.10 1.01 16 22 N -0.88 -25.89 13.96 55.50 0.77 -25.11 16 23 Si 0.88 19.34 27.74 -169.99 -4.71 14.63 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 27 C 0.09 1.03 11.50 -16.98 -0.20 0.83 16 28 N -0.30 -3.77 12.50 30.86 0.39 -3.38 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.07 0.31 7.13 -51.93 -0.37 -0.06 16 36 H 0.18 1.63 7.24 -52.49 -0.38 1.25 16 37 H 0.40 4.26 7.56 -40.82 -0.31 3.96 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.35 5.72 8.43 -39.29 -0.33 5.39 16 44 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 47 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.19 1.79 7.50 -52.48 -0.39 1.39 16 LS Contribution 404.48 15.07 6.10 6.10 Total: -1.00 -36.60 404.48 -6.85 -43.44 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -7.46 Total: 16.16 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -0.92 Total: 9.31 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -0.02 Total: -65.39 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: 0.17 Total: -24.25 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.60 -6.85 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274986669.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.918 kcal (2) G-P(sol) polarization free energy of solvation -36.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds