Wall clock time and date at job start Tue Mar 31 2020 20:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47081 * 2 1 4 4 N 1.46503 * 109.46850 * 119.99831 * 2 1 3 5 5 C 1.34254 * 125.75484 * 275.29002 * 4 2 1 6 6 C 1.38046 * 107.41489 * 180.16051 * 5 4 2 7 7 C 1.47432 * 126.41195 * 179.83451 * 6 5 4 8 8 O 1.21603 * 120.00137 * 359.71659 * 7 6 5 9 9 N 1.34777 * 119.99549 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99724 * 179.72679 * 9 7 6 11 11 H 1.08994 * 109.47052 * 35.00246 * 10 9 7 12 12 C 1.53008 * 109.46864 * 275.00347 * 10 9 7 13 13 C 1.52995 * 109.47024 * 155.00353 * 10 9 7 14 14 N 1.46898 * 109.47107 * 304.99860 * 13 10 9 15 15 C 1.46898 * 110.99995 * 180.02562 * 14 13 10 16 16 C 1.50707 * 109.47178 * 180.02562 * 15 14 13 17 17 O 1.21288 * 119.99638 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99842 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99550 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00357 * 0.02562 * 19 18 16 21 21 C 1.38957 * 119.99601 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99701 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00265 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47102 * 89.99649 * 23 21 19 25 25 H 1.48495 * 109.47310 * 209.99800 * 23 21 19 26 26 H 1.48507 * 109.46951 * 330.00002 * 23 21 19 27 27 C 1.41285 * 107.17066 * 359.57646 * 6 5 4 28 28 N 1.30443 * 108.02583 * 0.26318 * 27 6 5 29 29 H 1.08996 * 109.47466 * 300.00115 * 1 2 3 30 30 H 1.09007 * 109.47170 * 60.00185 * 1 2 3 31 31 H 1.09003 * 109.47476 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47466 * 239.99885 * 2 1 3 33 33 H 1.09004 * 109.46764 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47004 * 299.99960 * 3 2 1 35 35 H 1.09000 * 109.46843 * 60.00094 * 3 2 1 36 36 H 1.07997 * 126.29481 * 0.03767 * 5 4 2 37 37 H 0.97000 * 120.00483 * 359.73112 * 9 7 6 38 38 H 1.08991 * 109.47246 * 60.00403 * 12 10 9 39 39 H 1.08998 * 109.46377 * 180.02562 * 12 10 9 40 40 H 1.09002 * 109.46916 * 299.99788 * 12 10 9 41 41 H 1.09005 * 109.47349 * 64.99828 * 13 10 9 42 42 H 1.09002 * 109.47351 * 184.99998 * 13 10 9 43 43 H 1.00900 * 110.99902 * 303.95714 * 14 13 10 44 44 H 1.08996 * 109.47477 * 299.99786 * 15 14 13 45 45 H 1.09004 * 109.47245 * 60.00092 * 15 14 13 46 46 H 0.97002 * 120.00054 * 359.97438 * 18 16 15 47 47 H 0.97001 * 119.99664 * 180.02562 * 22 21 19 48 48 H 1.08007 * 125.98828 * 180.29348 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1850 -0.1376 2.4082 6 6 2.6629 -1.1223 3.2494 7 6 2.9947 -0.9680 4.6776 8 8 2.8582 0.1116 5.2204 9 7 3.4543 -2.0223 5.3803 10 6 3.7897 -1.8675 6.7980 11 1 3.1000 -1.1609 7.2595 12 6 5.2210 -1.3429 6.9291 13 6 3.6768 -3.2224 7.4996 14 7 2.3376 -3.7816 7.2722 15 6 2.1922 -5.0853 7.9332 16 6 0.8091 -5.6267 7.6777 17 8 0.0222 -4.9893 7.0102 18 7 0.4468 -6.8190 8.1910 19 6 -0.8116 -7.3112 7.9590 20 1 -1.5124 -6.7437 7.3646 21 6 -1.1851 -8.5408 8.4878 22 7 -2.3911 -9.0128 8.2649 23 14 0.0271 -9.5227 9.5153 24 1 -0.1151 -9.1446 10.9443 25 1 -0.2505 -10.9728 9.3570 26 1 1.4108 -9.2311 9.0615 27 6 2.7688 -2.3070 2.4869 28 7 2.3837 -2.0394 1.2697 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.9842 0.8894 2.6754 37 1 3.5630 -2.8835 4.9474 38 1 5.3014 -0.3776 6.4293 39 1 5.4706 -1.2282 7.9839 40 1 5.9107 -2.0496 6.4676 41 1 4.4277 -3.9031 7.0982 42 1 3.8393 -3.0923 8.5695 43 1 1.6213 -3.1399 7.5773 44 1 2.9327 -5.7791 7.5353 45 1 2.3442 -4.9676 9.0062 46 1 1.0763 -7.3289 8.7246 47 1 -2.6519 -9.8710 8.6344 48 1 3.1087 -3.2663 2.8486 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274986669.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:30 Heat of formation + Delta-G solvation = -26.618694 kcal Electronic energy + Delta-G solvation = -28570.387240 eV Core-core repulsion = 24467.760506 eV Total energy + Delta-G solvation = -4102.626735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.42512 -40.47017 -40.14285 -37.69352 -36.72577 -36.04034 -35.06039 -33.72452 -32.37979 -31.45577 -30.54099 -29.04295 -28.26792 -26.61541 -25.14170 -24.30893 -23.30602 -22.08444 -21.25241 -21.07985 -20.88500 -20.23686 -18.93718 -17.85900 -17.39721 -16.96547 -16.63911 -16.50398 -16.33976 -16.03171 -15.78914 -15.50496 -15.27762 -15.03881 -14.96223 -14.79433 -14.52627 -14.26993 -14.04083 -13.87195 -13.79686 -13.28428 -13.22257 -13.11386 -13.10197 -12.95555 -12.76940 -12.66205 -12.40868 -12.40086 -12.31096 -11.96855 -11.93817 -11.77564 -11.49589 -10.84100 -10.58409 -10.41846 -10.23434 -10.03228 -9.58419 -9.29585 -8.40170 -6.01109 0.56271 1.19113 1.31218 1.36596 1.37055 1.46066 1.99224 2.24453 2.40078 2.56888 2.75668 3.16662 3.39847 3.46768 3.75554 3.83389 3.87301 3.93761 4.05007 4.15684 4.18151 4.29404 4.35890 4.44035 4.51968 4.59280 4.61735 4.68105 4.70245 4.73108 4.77992 4.82511 4.85107 4.89381 5.12334 5.14997 5.17788 5.34593 5.43236 5.54068 5.68704 5.91193 5.92005 6.07240 6.34506 6.53226 6.61460 6.76252 6.90177 7.41678 7.42055 7.99921 8.77728 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011841 B = 0.002357 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.126083 B =11876.032460 C =13697.182970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 C -0.161 4.161 4 N -0.352 5.352 5 C 0.129 3.871 6 C -0.315 4.315 7 C 0.595 3.405 8 O -0.597 6.597 9 N -0.697 5.697 10 C 0.146 3.854 11 H 0.062 0.938 12 C -0.151 4.151 13 C 0.055 3.945 14 N -0.684 5.684 15 C 0.063 3.937 16 C 0.447 3.553 17 O -0.616 6.616 18 N -0.592 5.592 19 C -0.328 4.328 20 H 0.052 0.948 21 C -0.019 4.019 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.228 1.228 27 C 0.084 3.916 28 N -0.326 5.326 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.046 0.954 32 H 0.111 0.889 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.200 0.800 37 H 0.410 0.590 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.339 0.661 44 H 0.120 0.880 45 H 0.078 0.922 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.772 17.357 -10.183 28.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 C -0.219 4.219 4 N -0.131 5.131 5 C -0.024 4.024 6 C -0.329 4.329 7 C 0.384 3.616 8 O -0.480 6.480 9 N -0.346 5.346 10 C 0.041 3.959 11 H 0.080 0.920 12 C -0.210 4.210 13 C -0.073 4.073 14 N -0.316 5.316 15 C -0.069 4.069 16 C 0.235 3.765 17 O -0.500 6.500 18 N -0.234 5.234 19 C -0.457 4.457 20 H 0.070 0.930 21 C -0.217 4.217 22 N -0.578 5.578 23 Si 0.787 3.213 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.151 1.151 27 C -0.104 4.104 28 N -0.145 5.145 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.065 0.935 32 H 0.129 0.871 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.217 0.783 37 H 0.246 0.754 38 H 0.063 0.937 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.157 0.843 44 H 0.138 0.862 45 H 0.096 0.904 46 H 0.226 0.774 47 H 0.088 0.912 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 18.938 17.676 -12.154 28.615 hybrid contribution -0.367 -0.728 2.015 2.173 sum 18.571 16.948 -10.139 27.109 Atomic orbital electron populations 1.22255 0.92764 1.02620 1.04508 1.21772 0.95506 0.94021 0.84480 1.22238 1.02134 0.92151 1.05356 1.49109 1.47882 1.06988 1.09153 1.23124 0.94513 1.00115 0.84664 1.20339 1.21352 0.95614 0.95644 1.17395 0.75441 0.83649 0.85146 1.90704 1.57158 1.28007 1.72175 1.45572 1.65641 1.12568 1.10859 1.20984 0.97307 0.96816 0.80824 0.91969 1.22053 0.94605 1.01042 1.03286 1.22388 0.90553 0.94729 0.99676 1.60056 1.04911 1.03963 1.62621 1.21647 0.92838 0.93229 0.99158 1.21114 0.91063 0.81883 0.82425 1.90563 1.55755 1.60229 1.43459 1.42030 1.13114 1.19207 1.49020 1.18989 0.90277 1.03898 1.32542 0.92998 1.26170 0.98872 0.97596 0.99036 1.69819 1.20885 1.20828 1.46226 0.85331 0.79341 0.77801 0.78818 1.18196 1.20182 1.15087 1.24380 0.96615 0.99351 0.90010 1.77122 1.21954 0.94063 1.21401 0.92134 0.87408 0.93524 0.87093 0.91721 0.87175 0.91062 0.78332 0.75374 0.93742 0.89888 0.90728 0.88072 0.91675 0.84289 0.86183 0.90381 0.77402 0.91205 0.77682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.52 71.98 0.69 -1.35 16 2 C 0.14 1.87 3.91 44.99 0.18 2.04 16 3 C -0.16 -1.23 8.83 71.98 0.64 -0.59 16 4 N -0.35 -7.37 3.49 -325.75 -1.14 -8.51 16 5 C 0.13 2.86 10.39 84.28 0.88 3.74 16 6 C -0.31 -8.08 6.13 -20.15 -0.12 -8.21 16 7 C 0.59 16.78 7.78 86.66 0.67 17.46 16 8 O -0.60 -20.46 16.56 -4.04 -0.07 -20.52 16 9 N -0.70 -15.97 4.79 -445.79 -2.14 -18.11 16 10 C 0.15 2.96 2.81 44.99 0.13 3.09 16 11 H 0.06 1.59 7.58 -2.39 -0.02 1.57 16 12 C -0.15 -2.39 9.48 71.98 0.68 -1.70 16 13 C 0.06 0.97 5.24 86.30 0.45 1.43 16 14 N -0.68 -18.52 5.85 -517.93 -3.03 -21.55 16 15 C 0.06 1.78 6.17 85.56 0.53 2.30 16 16 C 0.45 19.82 7.82 87.66 0.69 20.50 16 17 O -0.62 -34.31 15.78 -3.05 -0.05 -34.35 16 18 N -0.59 -27.57 5.09 -306.97 -1.56 -29.13 16 19 C -0.33 -19.29 10.16 84.04 0.85 -18.44 16 20 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 21 C -0.02 -1.03 5.50 84.93 0.47 -0.56 16 22 N -0.94 -56.97 13.96 21.67 0.30 -56.67 16 23 Si 0.97 38.53 27.74 68.60 1.90 40.44 16 24 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 25 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 26 H -0.23 -7.49 6.52 99.48 0.65 -6.84 16 27 C 0.08 2.02 11.50 85.65 0.99 3.01 16 28 N -0.33 -8.35 12.50 -56.28 -0.70 -9.06 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.07 0.54 7.13 -2.39 -0.02 0.52 16 36 H 0.20 3.57 7.24 -2.91 -0.02 3.55 16 37 H 0.41 8.23 7.56 -92.71 -0.70 7.53 16 38 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.34 10.83 8.43 -89.69 -0.76 10.07 16 44 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.39 14.83 5.76 -92.71 -0.53 14.29 16 47 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 48 H 0.21 3.87 7.50 -2.91 -0.02 3.85 16 Total: -1.00 -87.48 404.48 0.17 -87.31 By element: Atomic # 1 Polarization: 48.49 SS G_CDS: -1.05 Total: 47.44 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 7.70 Total: 22.71 kcal Atomic # 7 Polarization: -134.75 SS G_CDS: -8.27 Total: -143.02 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -0.12 Total: -54.88 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 1.90 Total: 40.44 kcal Total: -87.48 0.17 -87.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274986669.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.690 kcal (2) G-P(sol) polarization free energy of solvation -87.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds