Wall clock time and date at job start Tue Mar 31 2020 20:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47006 * 2 1 4 4 C 1.34952 * 126.04137 * 124.97671 * 3 2 1 5 5 C 1.35314 * 107.74948 * 179.75303 * 4 3 2 6 6 C 1.39876 * 107.91621 * 0.38883 * 5 4 3 7 7 C 1.50704 * 125.89371 * 179.86879 * 6 5 4 8 8 C 1.50701 * 109.47153 * 124.71843 * 7 6 5 9 9 O 1.21275 * 119.99632 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99690 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99686 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47068 * 324.99893 * 11 10 8 13 13 C 1.53002 * 109.47411 * 84.99974 * 11 10 8 14 14 C 1.52997 * 109.47212 * 204.99833 * 11 10 8 15 15 N 1.46905 * 109.47325 * 54.99792 * 14 11 10 16 16 C 1.46899 * 111.00405 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47325 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99687 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00001 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99931 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99837 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00009 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00039 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99994 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47314 * 60.00210 * 24 22 20 26 26 H 1.48495 * 109.47076 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47022 * 299.99884 * 24 22 20 28 28 N 1.30830 * 108.20289 * 359.60518 * 6 5 4 29 29 H 1.08996 * 109.46761 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47110 * 299.99937 * 1 2 3 31 31 H 1.08998 * 109.46740 * 60.00239 * 1 2 3 32 32 H 1.08994 * 109.47110 * 240.00063 * 2 1 3 33 33 H 1.08994 * 109.47341 * 119.99342 * 2 1 3 34 34 H 1.07999 * 126.12381 * 359.97438 * 4 3 2 35 35 H 1.07997 * 126.04259 * 180.27619 * 5 4 3 36 36 H 1.08996 * 109.47513 * 4.71302 * 7 6 5 37 37 H 1.09006 * 109.46832 * 244.71948 * 7 6 5 38 38 H 0.97000 * 120.00680 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47075 * 59.99363 * 13 11 10 40 40 H 1.08996 * 109.47407 * 180.02562 * 13 11 10 41 41 H 1.09000 * 109.46986 * 300.00092 * 13 11 10 42 42 H 1.08998 * 109.47192 * 174.99746 * 14 11 10 43 43 H 1.09000 * 109.47325 * 294.99862 * 14 11 10 44 44 H 1.00899 * 110.99764 * 303.95647 * 15 14 11 45 45 H 1.09006 * 109.46590 * 299.99952 * 16 15 14 46 46 H 1.08996 * 109.46962 * 59.99644 * 16 15 14 47 47 H 0.96996 * 120.00362 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99614 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8728 1.9213 0.8941 5 6 3.0758 3.2123 0.5430 6 6 2.3125 3.4724 -0.6000 7 6 2.2361 4.7882 -1.3308 8 6 2.5937 4.5795 -2.7798 9 8 2.8826 3.4716 -3.1795 10 7 2.5923 5.6241 -3.6313 11 6 2.9405 5.4213 -5.0399 12 1 3.7100 4.6532 -5.1170 13 6 1.6975 4.9774 -5.8138 14 6 3.4670 6.7316 -5.6288 15 7 4.5868 7.2202 -4.8131 16 6 5.1186 8.4800 -5.3496 17 6 6.2635 8.9489 -4.4892 18 8 6.6028 8.2978 -3.5237 19 7 6.9105 10.0916 -4.7925 20 6 7.9524 10.5178 -4.0100 21 1 8.2550 9.9376 -3.1508 22 6 8.6198 11.6957 -4.3230 23 7 8.2526 12.4008 -5.3693 24 14 10.0399 12.2761 -3.2572 25 1 11.1104 11.2469 -3.2554 26 1 10.5777 13.5494 -3.7998 27 1 9.5601 12.4937 -1.8688 28 7 1.6809 2.3747 -0.9282 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.3179 1.4132 1.7367 35 1 3.7129 3.9176 1.0557 36 1 2.9349 5.4942 -0.8821 37 1 1.2232 5.1848 -1.2599 38 1 2.3609 6.5102 -3.3117 39 1 0.9279 5.7455 -5.7366 40 1 1.9566 4.8261 -6.8616 41 1 1.3224 4.0440 -5.3942 42 1 3.8088 6.5597 -6.6495 43 1 2.6693 7.4745 -5.6331 44 1 4.3120 7.3259 -3.8481 45 1 5.4718 8.3206 -6.3685 46 1 4.3323 9.2347 -5.3516 47 1 6.6390 10.6124 -5.5643 48 1 8.7183 13.2232 -5.5875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275162975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:09 Heat of formation + Delta-G solvation = 2.251690 kcal Electronic energy + Delta-G solvation = -28215.253440 eV Core-core repulsion = 24113.878620 eV Total energy + Delta-G solvation = -4101.374821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.32777 -39.69185 -38.28435 -36.67907 -34.88769 -34.20628 -33.59268 -32.11735 -31.21816 -30.81579 -29.77731 -28.08179 -27.56918 -25.01248 -23.72579 -23.21662 -21.74305 -21.25520 -20.48815 -19.61714 -19.20267 -17.89817 -17.27761 -17.16132 -16.30582 -15.95815 -15.60634 -15.39023 -15.18346 -14.65076 -14.48744 -14.45612 -14.14103 -13.88617 -13.74549 -13.49433 -13.42480 -13.03857 -13.00452 -12.67781 -12.55427 -12.38725 -12.34406 -12.09974 -11.88573 -11.66994 -11.63219 -11.59079 -11.43989 -11.03448 -10.92111 -10.60184 -10.43732 -10.20756 -9.78215 -9.49427 -9.30043 -9.05635 -8.63450 -8.45462 -8.06526 -7.95383 -6.41152 -3.81946 1.82044 2.35011 2.61997 2.77470 3.20756 3.26395 3.28160 3.30989 3.91275 4.07610 4.16775 4.30316 4.55198 4.60643 4.64950 4.80028 4.85878 4.97777 5.04327 5.07563 5.22107 5.22683 5.24393 5.26379 5.32400 5.39198 5.47898 5.59165 5.61917 5.67575 5.70092 5.76328 5.78756 5.92970 5.96838 6.03122 6.14076 6.27234 6.53058 6.54786 6.91543 7.17834 7.51330 7.55633 7.63566 7.67397 8.06706 8.31986 8.61901 9.18427 9.54805 10.06408 10.76464 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.001973 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.571471 B =14187.292761 C =15769.798129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 N -0.375 5.375 4 C 0.047 3.953 5 C -0.263 4.263 6 C 0.083 3.917 7 C -0.061 4.061 8 C 0.521 3.479 9 O -0.523 6.523 10 N -0.726 5.726 11 C 0.146 3.854 12 H 0.096 0.904 13 C -0.161 4.161 14 C 0.051 3.949 15 N -0.667 5.667 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 N -0.262 5.262 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.171 0.829 35 H 0.148 0.852 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.397 0.603 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.032 0.968 44 H 0.348 0.652 45 H 0.087 0.913 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.228 -17.605 7.166 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 N -0.158 5.158 4 C -0.098 4.098 5 C -0.293 4.293 6 C -0.084 4.084 7 C -0.103 4.103 8 C 0.306 3.694 9 O -0.398 6.398 10 N -0.379 5.379 11 C 0.041 3.959 12 H 0.114 0.886 13 C -0.220 4.220 14 C -0.079 4.079 15 N -0.300 5.300 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 N -0.084 5.084 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.188 0.812 35 H 0.166 0.834 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.231 0.769 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.050 0.950 44 H 0.168 0.832 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.077 -19.788 6.319 27.537 hybrid contribution 0.444 2.152 0.973 2.403 sum -17.633 -17.637 7.291 25.983 Atomic orbital electron populations 1.22046 0.93913 1.02704 1.03555 1.21641 0.95983 0.77734 1.03616 1.48706 1.35965 1.10105 1.21006 1.22485 0.96004 0.94888 0.96445 1.21383 1.09182 0.96940 1.01746 1.21500 0.97344 0.94105 0.95446 1.20045 1.04783 0.93525 0.91933 1.20279 0.77079 0.84639 0.87383 1.90731 1.46755 1.23918 1.78380 1.45975 1.71183 1.11024 1.09676 1.20986 0.96930 0.98137 0.79798 0.88588 1.22142 0.97661 1.01831 1.00323 1.22301 0.92190 0.94805 0.98616 1.60013 1.33437 1.30131 1.06401 1.21691 0.96686 0.90351 0.99537 1.19805 0.86410 0.83329 0.87937 1.90530 1.68778 1.56657 1.30661 1.41851 1.30091 1.20478 1.27580 1.19657 1.08185 1.05825 1.09272 0.87972 1.25259 0.99302 0.96291 0.97073 1.69605 1.42115 1.16134 1.26476 0.85915 0.80802 0.77810 0.79672 1.19884 1.20999 1.19924 1.77337 1.23441 0.96201 1.11414 0.90843 0.92199 0.91038 0.89848 0.88834 0.81170 0.83414 0.86605 0.87502 0.76944 0.92616 0.91565 0.91909 0.89593 0.95017 0.83224 0.89519 0.93871 0.77470 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 10.10 37.16 0.38 -0.68 16 2 C 0.13 0.94 7.23 -4.04 -0.03 0.91 16 3 N -0.37 -4.13 3.68 -61.37 -0.23 -4.36 16 4 C 0.05 0.46 11.45 -17.22 -0.20 0.26 16 5 C -0.26 -2.96 10.72 -40.01 -0.43 -3.39 16 6 C 0.08 1.07 6.02 -82.40 -0.50 0.58 16 7 C -0.06 -0.64 6.28 -29.03 -0.18 -0.82 16 8 C 0.52 6.93 7.78 -10.99 -0.09 6.85 16 9 O -0.52 -9.21 15.22 5.56 0.08 -9.13 16 10 N -0.73 -8.08 4.36 -53.80 -0.23 -8.31 16 11 C 0.15 1.73 2.88 -67.93 -0.20 1.53 16 12 H 0.10 1.42 7.58 -51.93 -0.39 1.03 16 13 C -0.16 -1.60 9.48 37.16 0.35 -1.25 16 14 C 0.05 0.60 5.30 -3.82 -0.02 0.58 16 15 N -0.67 -10.56 6.12 -115.06 -0.70 -11.27 16 16 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 17 C 0.44 10.33 7.82 -10.99 -0.09 10.24 16 18 O -0.58 -15.81 15.78 5.55 0.09 -15.72 16 19 N -0.56 -14.21 5.29 -10.97 -0.06 -14.26 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 24 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 N -0.26 -3.67 11.76 33.67 0.40 -3.28 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.38 8.07 -51.93 -0.42 -0.04 16 34 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.12 0.99 8.12 -51.93 -0.42 0.57 16 37 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.40 3.45 8.15 -40.82 -0.33 3.12 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.35 5.56 7.28 -39.29 -0.29 5.28 16 45 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 408.92 15.07 6.16 6.16 Total: -1.00 -37.26 408.92 -7.66 -44.92 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -7.61 Total: 15.30 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -1.26 Total: 7.64 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -0.10 Total: -65.19 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: 0.17 Total: -24.85 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.26 -7.66 -44.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275162975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.174 kcal (2) G-P(sol) polarization free energy of solvation -37.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds