Wall clock time and date at job start Tue Mar 31 2020 20:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47006 * 2 1 4 4 C 1.34952 * 126.04137 * 124.97671 * 3 2 1 5 5 C 1.35314 * 107.74948 * 179.75303 * 4 3 2 6 6 C 1.39876 * 107.91621 * 0.38883 * 5 4 3 7 7 C 1.50704 * 125.89371 * 179.86879 * 6 5 4 8 8 C 1.50701 * 109.47153 * 124.71843 * 7 6 5 9 9 O 1.21275 * 119.99632 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99690 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99686 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47068 * 324.99893 * 11 10 8 13 13 C 1.53002 * 109.47411 * 84.99974 * 11 10 8 14 14 C 1.52997 * 109.47212 * 204.99833 * 11 10 8 15 15 N 1.46905 * 109.47325 * 54.99792 * 14 11 10 16 16 C 1.46899 * 111.00405 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47325 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99687 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00001 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99931 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99837 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00009 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00039 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99994 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47314 * 60.00210 * 24 22 20 26 26 H 1.48495 * 109.47076 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47022 * 299.99884 * 24 22 20 28 28 N 1.30830 * 108.20289 * 359.60518 * 6 5 4 29 29 H 1.08996 * 109.46761 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47110 * 299.99937 * 1 2 3 31 31 H 1.08998 * 109.46740 * 60.00239 * 1 2 3 32 32 H 1.08994 * 109.47110 * 240.00063 * 2 1 3 33 33 H 1.08994 * 109.47341 * 119.99342 * 2 1 3 34 34 H 1.07999 * 126.12381 * 359.97438 * 4 3 2 35 35 H 1.07997 * 126.04259 * 180.27619 * 5 4 3 36 36 H 1.08996 * 109.47513 * 4.71302 * 7 6 5 37 37 H 1.09006 * 109.46832 * 244.71948 * 7 6 5 38 38 H 0.97000 * 120.00680 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47075 * 59.99363 * 13 11 10 40 40 H 1.08996 * 109.47407 * 180.02562 * 13 11 10 41 41 H 1.09000 * 109.46986 * 300.00092 * 13 11 10 42 42 H 1.08998 * 109.47192 * 174.99746 * 14 11 10 43 43 H 1.09000 * 109.47325 * 294.99862 * 14 11 10 44 44 H 1.00899 * 110.99764 * 303.95647 * 15 14 11 45 45 H 1.09006 * 109.46590 * 299.99952 * 16 15 14 46 46 H 1.08996 * 109.46962 * 59.99644 * 16 15 14 47 47 H 0.96996 * 120.00362 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99614 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8728 1.9213 0.8941 5 6 3.0758 3.2123 0.5430 6 6 2.3125 3.4724 -0.6000 7 6 2.2361 4.7882 -1.3308 8 6 2.5937 4.5795 -2.7798 9 8 2.8826 3.4716 -3.1795 10 7 2.5923 5.6241 -3.6313 11 6 2.9405 5.4213 -5.0399 12 1 3.7100 4.6532 -5.1170 13 6 1.6975 4.9774 -5.8138 14 6 3.4670 6.7316 -5.6288 15 7 4.5868 7.2202 -4.8131 16 6 5.1186 8.4800 -5.3496 17 6 6.2635 8.9489 -4.4892 18 8 6.6028 8.2978 -3.5237 19 7 6.9105 10.0916 -4.7925 20 6 7.9524 10.5178 -4.0100 21 1 8.2550 9.9376 -3.1508 22 6 8.6198 11.6957 -4.3230 23 7 8.2526 12.4008 -5.3693 24 14 10.0399 12.2761 -3.2572 25 1 11.1104 11.2469 -3.2554 26 1 10.5777 13.5494 -3.7998 27 1 9.5601 12.4937 -1.8688 28 7 1.6809 2.3747 -0.9282 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.3179 1.4132 1.7367 35 1 3.7129 3.9176 1.0557 36 1 2.9349 5.4942 -0.8821 37 1 1.2232 5.1848 -1.2599 38 1 2.3609 6.5102 -3.3117 39 1 0.9279 5.7455 -5.7366 40 1 1.9566 4.8261 -6.8616 41 1 1.3224 4.0440 -5.3942 42 1 3.8088 6.5597 -6.6495 43 1 2.6693 7.4745 -5.6331 44 1 4.3120 7.3259 -3.8481 45 1 5.4718 8.3206 -6.3685 46 1 4.3323 9.2347 -5.3516 47 1 6.6390 10.6124 -5.5643 48 1 8.7183 13.2232 -5.5875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275162975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:08 Heat of formation + Delta-G solvation = -27.136363 kcal Electronic energy + Delta-G solvation = -28216.527802 eV Core-core repulsion = 24113.878620 eV Total energy + Delta-G solvation = -4102.649182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.13093 -40.72823 -40.08053 -37.84801 -36.01146 -35.57517 -35.01961 -33.25017 -32.96229 -31.70064 -30.59109 -28.97291 -28.83128 -26.68461 -24.73049 -24.27500 -22.65670 -22.00254 -21.48031 -21.07428 -20.41810 -19.88209 -18.32099 -17.97112 -17.69209 -17.07059 -16.86589 -16.41655 -16.34767 -16.12621 -15.93044 -15.38118 -15.32018 -15.14629 -14.98398 -14.49559 -14.32476 -14.22054 -14.07454 -13.78977 -13.50244 -13.32825 -13.22042 -13.06127 -13.02018 -12.94455 -12.86117 -12.77053 -12.58798 -12.41178 -12.22792 -12.11437 -11.92724 -11.48472 -11.43407 -10.84660 -10.34302 -10.15226 -10.02953 -9.99558 -9.43258 -9.29241 -8.44880 -5.93384 1.02851 1.41089 1.43130 1.53778 1.67334 1.73629 1.80745 2.07751 2.30293 2.38618 2.91977 3.22654 3.49478 3.53498 3.85429 3.88125 3.97914 4.08549 4.15965 4.21913 4.29428 4.33550 4.35950 4.40472 4.51920 4.53429 4.61935 4.68726 4.69883 4.77483 4.80122 4.82100 4.89486 4.96545 5.09347 5.14899 5.22584 5.27681 5.42555 5.59024 5.73921 5.89297 6.11225 6.24437 6.42065 6.60828 6.62412 6.84622 7.14653 7.35632 7.58662 8.14274 8.72083 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.001973 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.571471 B =14187.292761 C =15769.798129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.121 3.879 3 N -0.381 5.381 4 C 0.054 3.946 5 C -0.289 4.289 6 C 0.063 3.937 7 C -0.058 4.058 8 C 0.516 3.484 9 O -0.574 6.574 10 N -0.715 5.715 11 C 0.148 3.852 12 H 0.060 0.940 13 C -0.150 4.150 14 C 0.058 3.942 15 N -0.688 5.688 16 C 0.065 3.935 17 C 0.436 3.564 18 O -0.624 6.624 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.270 1.270 28 N -0.308 5.308 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.211 0.789 35 H 0.161 0.839 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.411 0.589 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.345 0.655 45 H 0.104 0.896 46 H 0.074 0.926 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.954 -17.144 7.562 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.001 3.999 3 N -0.164 5.164 4 C -0.092 4.092 5 C -0.318 4.318 6 C -0.104 4.104 7 C -0.099 4.099 8 C 0.303 3.697 9 O -0.452 6.452 10 N -0.368 5.368 11 C 0.043 3.957 12 H 0.078 0.922 13 C -0.209 4.209 14 C -0.071 4.071 15 N -0.321 5.321 16 C -0.067 4.067 17 C 0.223 3.777 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.195 1.195 27 H -0.196 1.196 28 N -0.131 5.131 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.149 0.851 34 H 0.228 0.772 35 H 0.178 0.822 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.247 0.753 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.164 0.836 45 H 0.122 0.878 46 H 0.092 0.908 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.843 -19.290 6.680 27.781 hybrid contribution 0.645 1.923 0.851 2.199 sum -18.198 -17.367 7.530 26.258 Atomic orbital electron populations 1.21982 0.93552 1.03891 1.02020 1.21999 0.96389 0.76310 1.05154 1.49060 1.35971 1.10803 1.20555 1.23145 0.94753 0.94637 0.96669 1.21718 1.09940 0.98213 1.01963 1.21945 0.97603 0.94637 0.96201 1.20147 1.06662 0.93305 0.89764 1.20802 0.76135 0.84162 0.88594 1.90703 1.49212 1.25930 1.79391 1.45908 1.70157 1.11339 1.09396 1.20907 0.96916 0.97398 0.80450 0.92202 1.22042 0.97031 1.01284 1.00562 1.22331 0.91693 0.94857 0.98186 1.59978 1.35763 1.29549 1.06835 1.21546 0.94952 0.91662 0.98527 1.20935 0.86972 0.82038 0.87711 1.90500 1.70218 1.57606 1.32727 1.41915 1.30088 1.21326 1.27634 1.19622 1.10196 1.06786 1.09812 0.90402 1.26014 1.01215 0.95817 0.98156 1.69662 1.42851 1.16342 1.27140 0.85008 0.77665 0.77608 0.78175 1.19977 1.19507 1.19564 1.77248 1.25162 0.97384 1.13311 0.88253 0.92348 0.93833 0.90464 0.85080 0.77196 0.82164 0.84811 0.84998 0.75277 0.90582 0.90171 0.94066 0.88588 0.92050 0.83569 0.87817 0.90807 0.76920 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 10.10 71.98 0.73 -1.22 16 2 C 0.12 1.63 7.23 86.38 0.62 2.25 16 3 N -0.38 -8.32 3.68 -348.06 -1.28 -9.60 16 4 C 0.05 0.99 11.45 83.54 0.96 1.95 16 5 C -0.29 -6.43 10.72 21.99 0.24 -6.20 16 6 C 0.06 1.65 6.02 43.11 0.26 1.91 16 7 C -0.06 -1.20 6.28 29.10 0.18 -1.02 16 8 C 0.52 14.06 7.78 87.66 0.68 14.74 16 9 O -0.57 -21.31 15.22 -3.01 -0.05 -21.36 16 10 N -0.71 -15.54 4.36 -442.54 -1.93 -17.47 16 11 C 0.15 3.41 2.88 44.99 0.13 3.54 16 12 H 0.06 1.84 7.58 -2.39 -0.02 1.82 16 13 C -0.15 -2.82 9.48 71.98 0.68 -2.14 16 14 C 0.06 1.23 5.30 86.30 0.46 1.69 16 15 N -0.69 -20.78 6.12 -517.93 -3.17 -23.95 16 16 C 0.07 2.12 6.17 85.56 0.53 2.65 16 17 C 0.44 20.42 7.82 87.66 0.69 21.11 16 18 O -0.62 -34.47 15.78 -3.07 -0.05 -34.52 16 19 N -0.57 -28.99 5.29 -307.00 -1.62 -30.61 16 20 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 23 N -0.92 -49.15 13.05 21.66 0.28 -48.87 16 24 Si 0.99 42.77 29.55 68.60 2.03 44.79 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 N -0.31 -8.95 11.76 -47.38 -0.56 -9.51 16 29 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 33 H 0.13 0.73 8.07 -2.39 -0.02 0.71 16 34 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 36 H 0.13 2.22 8.12 -2.39 -0.02 2.20 16 37 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.41 6.54 8.15 -92.71 -0.76 5.78 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.34 10.67 7.28 -89.69 -0.65 10.02 16 45 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 46 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.40 18.97 7.90 -92.71 -0.73 18.23 16 48 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -84.48 408.92 -0.06 -84.54 By element: Atomic # 1 Polarization: 46.74 SS G_CDS: -1.15 Total: 45.59 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 7.43 Total: 20.97 kcal Atomic # 7 Polarization: -131.74 SS G_CDS: -8.27 Total: -140.01 kcal Atomic # 8 Polarization: -55.78 SS G_CDS: -0.09 Total: -55.87 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -84.48 -0.06 -84.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275162975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.399 kcal (2) G-P(sol) polarization free energy of solvation -84.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds