Wall clock time and date at job start Tue Mar 31 2020 20:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46902 * 109.46534 * 175.00072 * 4 2 1 6 6 C 1.46907 * 110.99776 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46914 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00563 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99610 * 179.97438 * 7 6 5 10 10 C 1.37107 * 119.99906 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99254 * 0.02562 * 10 9 7 12 12 C 1.38948 * 120.00293 * 180.02562 * 10 9 7 13 13 N 1.31413 * 119.99423 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00016 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47227 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47110 * 120.00202 * 14 12 10 17 17 H 1.48500 * 109.46727 * 239.99927 * 14 12 10 18 18 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 19 19 C 1.34777 * 119.99525 * 84.99977 * 18 2 1 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 2 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 2 22 22 C 1.53004 * 109.47208 * 180.27843 * 21 19 18 23 23 C 1.50700 * 109.47208 * 180.02562 * 22 21 19 24 24 N 1.30497 * 125.65032 * 90.02577 * 23 22 21 25 25 C 1.34133 * 109.25439 * 180.02562 * 24 23 22 26 26 C 1.34662 * 108.01869 * 0.02562 * 25 24 23 27 27 N 1.35050 * 125.64719 * 269.71508 * 23 22 21 28 28 C 1.46493 * 126.39829 * 0.02562 * 27 23 22 29 29 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 32 32 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 33 33 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 34 34 H 1.00896 * 111.00427 * 56.05228 * 5 4 2 35 35 H 1.08998 * 109.46749 * 299.99469 * 6 5 4 36 36 H 1.08998 * 109.47510 * 59.99863 * 6 5 4 37 37 H 0.96996 * 120.00640 * 0.02562 * 9 7 6 38 38 H 0.96998 * 119.99396 * 179.97438 * 13 12 10 39 39 H 0.97000 * 120.00580 * 265.00723 * 18 2 1 40 40 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 41 41 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 42 42 H 1.09000 * 109.46887 * 300.00372 * 22 21 19 43 43 H 1.08998 * 109.46846 * 59.99549 * 22 21 19 44 44 H 1.07995 * 125.98566 * 180.02562 * 25 24 23 45 45 H 1.08000 * 126.58783 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.47421 * 89.99619 * 28 27 23 47 47 H 1.09002 * 109.47347 * 209.99573 * 28 27 23 48 48 H 1.09007 * 109.47279 * 329.99370 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5040 -0.8265 1.1906 6 6 4.0302 -1.5157 2.3765 7 6 5.5315 -1.6052 2.2805 8 8 6.1066 -1.1404 1.3191 9 7 6.2351 -2.2011 3.2635 10 6 7.6010 -2.2831 3.1760 11 1 8.1129 -1.8698 2.3195 12 6 8.3264 -2.8978 4.1891 13 7 7.7034 -3.4001 5.2314 14 14 10.1873 -3.0088 4.0701 15 1 10.6416 -2.3716 2.8081 16 1 10.8000 -2.3083 5.2274 17 1 10.5997 -4.4354 4.0802 18 7 2.0185 -0.6908 -1.1960 19 6 2.1472 -0.0185 -2.3570 20 8 1.8591 1.1584 -2.4116 21 6 2.6554 -0.7275 -3.5859 22 6 2.7122 0.2568 -4.7558 23 6 3.2198 -0.4523 -5.9848 24 7 2.4812 -1.0655 -6.8688 25 6 3.2699 -1.5804 -7.8237 26 6 4.5457 -1.2751 -7.5197 27 7 4.5141 -0.5535 -6.3570 28 6 5.6689 0.0004 -5.6459 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 -0.3633 0.5137 -0.8900 32 1 1.7516 -0.1581 2.1370 33 1 1.6053 -1.7197 1.2953 34 1 3.9280 0.0826 1.0826 35 1 3.7556 -0.9585 3.2721 36 1 3.6094 -2.5197 2.4299 37 1 5.7754 -2.5726 4.0325 38 1 8.2099 -3.8296 5.9385 39 1 2.2491 -1.6319 -1.1524 40 1 3.6539 -1.1197 -3.3923 41 1 1.9842 -1.5494 -3.8349 42 1 1.7138 0.6491 -4.9494 43 1 3.3834 1.0788 -4.5068 44 1 2.9396 -2.1414 -8.6854 45 1 5.4246 -1.5429 -8.0874 46 1 6.0419 -0.7334 -4.9314 47 1 6.4545 0.2425 -6.3617 48 1 5.3696 0.9045 -5.1154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275246362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:58 Heat of formation + Delta-G solvation = -20.387032 kcal Electronic energy + Delta-G solvation = -28321.451912 eV Core-core repulsion = 24219.095402 eV Total energy + Delta-G solvation = -4102.356510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.27474 -39.86896 -38.36028 -36.76490 -34.35612 -34.24334 -33.78072 -33.68437 -31.32397 -31.07655 -29.00214 -27.62997 -27.23349 -25.24342 -24.78850 -23.25270 -21.57405 -21.37265 -20.39690 -19.80181 -19.28476 -17.94936 -17.54826 -16.88633 -16.67924 -16.00013 -15.82418 -15.68352 -15.11721 -14.78261 -14.62586 -14.47043 -14.13137 -13.99785 -13.76668 -13.59779 -13.35866 -13.28399 -13.22457 -12.99424 -12.70986 -12.60775 -12.36504 -12.17569 -12.01575 -11.81387 -11.58213 -11.52954 -11.31671 -11.10326 -10.95292 -10.39047 -10.27684 -10.15360 -9.88014 -9.78667 -9.57158 -9.04382 -8.56923 -8.53258 -8.15532 -8.01491 -6.46941 -3.87886 1.82373 2.57012 2.66111 2.91633 3.12077 3.22248 3.23029 3.29719 3.85067 4.01142 4.20663 4.27283 4.47328 4.56744 4.71577 4.76578 4.83437 4.89834 4.98438 5.06261 5.10423 5.17045 5.19274 5.22628 5.27842 5.38854 5.41967 5.43503 5.56267 5.58594 5.71882 5.73617 5.85434 5.89339 5.91587 6.05050 6.09477 6.20242 6.50849 6.56775 6.95718 7.09711 7.50245 7.53830 7.56306 7.92833 8.01018 8.25211 8.55587 9.12677 9.48874 9.99920 10.70823 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009434 B = 0.002332 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.205060 B =12002.776210 C =14521.918155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.086 0.914 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.281 1.281 18 N -0.707 5.707 19 C 0.519 3.481 20 O -0.550 6.550 21 C -0.135 4.135 22 C -0.016 4.016 23 C 0.208 3.792 24 N -0.490 5.490 25 C -0.030 4.030 26 C -0.061 4.061 27 N -0.456 5.456 28 C 0.066 3.934 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.350 0.650 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.406 0.594 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.169 0.831 45 H 0.173 0.827 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.190 3.770 -16.028 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.104 0.896 4 C -0.083 4.083 5 N -0.299 5.299 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.542 5.542 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.207 1.207 18 N -0.357 5.357 19 C 0.306 3.694 20 O -0.429 6.429 21 C -0.176 4.176 22 C -0.056 4.056 23 C -0.054 4.054 24 N -0.209 5.209 25 C -0.179 4.179 26 C -0.194 4.194 27 N -0.139 5.139 28 C -0.076 4.076 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.170 0.830 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.241 0.759 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.104 0.896 44 H 0.186 0.814 45 H 0.190 0.810 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.634 4.264 -16.820 20.891 hybrid contribution 1.734 -0.274 1.217 2.136 sum -9.901 3.990 -15.603 18.905 Atomic orbital electron populations 1.22139 0.94996 1.02249 1.02622 1.20933 0.93596 0.97445 0.84046 0.89607 1.22320 0.89475 1.00737 0.95743 1.60063 1.03085 1.26829 1.39952 1.21681 0.95294 0.99874 0.91401 1.19797 0.88004 0.84599 0.85023 1.90519 1.71121 1.51921 1.33244 1.41880 1.07444 1.50902 1.19799 1.19739 0.81491 1.35120 1.06509 0.87907 1.25272 1.00727 0.96757 0.95226 1.69619 1.36646 1.38585 1.09387 0.85801 0.82194 0.77942 0.78414 1.19234 1.20737 1.20718 1.45833 1.66550 1.14486 1.08879 1.20450 0.77248 0.87159 0.84583 1.90689 1.50901 1.16011 1.85275 1.21596 1.03835 0.99723 0.92463 1.19688 1.03580 0.95768 0.86538 1.23265 0.79789 1.03134 0.99242 1.70252 1.33203 1.13812 1.03613 1.22293 0.89437 1.05481 1.00671 1.22713 1.00909 1.04076 0.91669 1.45344 1.07958 1.40700 1.19881 1.22145 0.87017 1.00533 0.97951 0.92311 0.91671 0.91827 0.93907 0.90446 0.83023 0.93825 0.89590 0.77461 0.91887 0.75889 0.88721 0.88252 0.88033 0.89592 0.81399 0.80951 0.89888 0.89515 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.15 1.54 2.81 -67.93 -0.19 1.34 16 3 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 4 C 0.05 0.51 5.24 -3.82 -0.02 0.49 16 5 N -0.67 -9.71 5.85 -115.05 -0.67 -10.38 16 6 C 0.05 0.82 6.17 -4.97 -0.03 0.79 16 7 C 0.44 9.97 7.82 -10.99 -0.09 9.89 16 8 O -0.58 -15.26 15.78 5.55 0.09 -15.17 16 9 N -0.56 -13.88 5.29 -10.96 -0.06 -13.94 16 10 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 11 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 14 Si 0.93 20.65 29.55 -169.99 -5.02 15.62 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 N -0.71 -7.58 4.80 -53.80 -0.26 -7.84 16 19 C 0.52 6.17 7.79 -10.98 -0.09 6.08 16 20 O -0.55 -8.23 15.64 5.55 0.09 -8.14 16 21 C -0.14 -1.32 5.68 -27.88 -0.16 -1.48 16 22 C -0.02 -0.17 4.81 -27.88 -0.13 -0.30 16 23 C 0.21 2.36 7.16 -155.41 -1.11 1.25 16 24 N -0.49 -6.36 11.25 -10.82 -0.12 -6.48 16 25 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 26 C -0.06 -0.55 11.58 -16.56 -0.19 -0.74 16 27 N -0.46 -4.40 3.15 -121.28 -0.38 -4.78 16 28 C 0.07 0.44 10.97 59.84 0.66 1.10 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.35 5.60 8.43 -39.29 -0.33 5.26 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.39 9.24 7.90 -40.82 -0.32 8.91 16 38 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.41 3.98 8.60 -40.82 -0.35 3.62 16 40 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 43 H 0.09 0.85 7.02 -51.93 -0.36 0.48 16 44 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 0.56 7.04 -51.92 -0.37 0.20 16 LS Contribution 408.07 15.07 6.15 6.15 Total: -1.00 -34.63 408.07 -8.48 -43.11 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -7.56 Total: 16.27 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -1.45 Total: 8.95 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: -0.77 Total: -66.79 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.17 Total: -23.31 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.63 -8.48 -43.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275246362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.722 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds