Wall clock time and date at job start Tue Mar 31 2020 20:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47475 * 2 1 4 4 N 1.28444 * 125.18890 * 85.78971 * 3 2 1 5 5 C 1.30866 * 110.93084 * 180.02562 * 4 3 2 6 6 C 1.39680 * 107.85666 * 0.26262 * 5 4 3 7 7 C 1.36600 * 125.19160 * 265.79696 * 3 2 1 8 8 C 1.47155 * 126.88551 * 0.02680 * 7 3 2 9 9 O 1.21629 * 120.00231 * 5.24270 * 8 7 3 10 10 N 1.34776 * 120.00283 * 185.24518 * 8 7 3 11 11 C 1.46501 * 120.00149 * 185.09847 * 10 8 7 12 12 H 1.08995 * 109.47143 * 34.99272 * 11 10 8 13 13 C 1.53000 * 109.46886 * 274.99470 * 11 10 8 14 14 C 1.53005 * 109.47160 * 154.99714 * 11 10 8 15 15 H 1.08994 * 109.47026 * 294.99586 * 14 11 10 16 16 C 1.53006 * 109.46918 * 54.99657 * 14 11 10 17 17 N 1.46897 * 109.47148 * 174.99770 * 14 11 10 18 18 C 1.46894 * 111.00043 * 154.99899 * 17 14 11 19 19 C 1.50701 * 109.47191 * 179.97438 * 18 17 14 20 20 O 1.21295 * 120.00114 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00130 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00362 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99472 * 0.02562 * 22 21 19 24 24 C 1.38943 * 120.00193 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00251 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99727 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47156 * 90.00020 * 26 24 22 28 28 H 1.48509 * 109.46928 * 209.99719 * 26 24 22 29 29 H 1.48497 * 109.47318 * 329.99834 * 26 24 22 30 30 H 1.09007 * 109.47030 * 299.99805 * 1 2 3 31 31 H 1.09004 * 109.47506 * 59.99587 * 1 2 3 32 32 H 1.09001 * 109.47712 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47030 * 240.00195 * 2 1 3 34 34 H 1.08998 * 109.47086 * 120.00273 * 2 1 3 35 35 H 1.07991 * 126.07109 * 180.02562 * 5 4 3 36 36 H 1.07997 * 127.31908 * 179.70286 * 6 5 4 37 37 H 0.97005 * 119.99738 * 5.09136 * 10 8 7 38 38 H 1.09002 * 109.47442 * 299.99988 * 13 11 10 39 39 H 1.09004 * 109.46811 * 60.00102 * 13 11 10 40 40 H 1.09002 * 109.46860 * 180.02562 * 13 11 10 41 41 H 1.09000 * 109.46245 * 179.97438 * 16 14 11 42 42 H 1.08998 * 109.47297 * 299.99826 * 16 14 11 43 43 H 1.08999 * 109.46776 * 60.00546 * 16 14 11 44 44 H 1.00903 * 111.00025 * 31.04119 * 17 14 11 45 45 H 1.08998 * 109.47067 * 299.99996 * 18 17 14 46 46 H 1.08996 * 109.47308 * 60.00162 * 18 17 14 47 47 H 0.96996 * 120.00281 * 0.02562 * 21 19 18 48 48 H 0.97004 * 120.00210 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1925 2.1047 1.0469 5 6 2.6371 3.2928 0.7254 6 6 2.7568 3.3435 -0.6653 7 6 2.3580 2.0961 -1.1133 8 6 2.3032 1.6351 -2.5097 9 8 1.8348 0.5437 -2.7720 10 7 2.7722 2.4222 -3.4982 11 6 2.6168 2.0133 -4.8964 12 1 1.6699 1.4874 -5.0180 13 6 3.7692 1.0860 -5.2875 14 6 2.6315 3.2519 -5.7946 15 1 1.7603 3.8693 -5.5763 16 6 3.9059 4.0570 -5.5323 17 7 2.5963 2.8358 -7.2030 18 6 2.0275 3.8926 -8.0501 19 6 2.0083 3.4308 -9.4844 20 8 2.4268 2.3294 -9.7726 21 7 1.5252 4.2411 -10.4469 22 6 1.5072 3.8208 -11.7518 23 1 1.8798 2.8401 -12.0083 24 6 1.0096 4.6565 -12.7440 25 7 0.5567 5.8499 -12.4319 26 14 0.9844 4.0834 -14.5218 27 1 -0.3017 3.3961 -14.8022 28 1 1.1255 5.2561 -15.4220 29 1 2.1095 3.1425 -14.7546 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.8668 4.0932 1.4130 36 1 3.0915 4.1779 -1.2637 37 1 3.2125 3.2596 -3.2838 38 1 4.7161 1.6119 -5.1658 39 1 3.7587 0.2036 -4.6475 40 1 3.6538 0.7821 -6.3279 41 1 3.9165 4.9390 -6.1726 42 1 3.9320 4.3657 -4.4873 43 1 4.7771 3.4394 -5.7507 44 1 2.0870 1.9716 -7.3121 45 1 1.0105 4.1111 -7.7246 46 1 2.6369 4.7924 -7.9667 47 1 1.1902 5.1217 -10.2164 48 1 0.2089 6.4332 -13.1246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275388375.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:47 Heat of formation + Delta-G solvation = 6.718056 kcal Electronic energy + Delta-G solvation = -28790.046544 eV Core-core repulsion = 24688.865399 eV Total energy + Delta-G solvation = -4101.181145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.88030 -40.04250 -38.46740 -37.36471 -35.09326 -34.38501 -33.81103 -31.96574 -31.22831 -30.34289 -30.11452 -29.12976 -26.61017 -25.03843 -24.45399 -23.92291 -22.90801 -21.70075 -20.32053 -19.78726 -19.33723 -18.42942 -17.90099 -16.72610 -16.36183 -16.27187 -15.80041 -15.59341 -15.28526 -14.99634 -14.78308 -14.56145 -14.41160 -14.18905 -13.96082 -13.74604 -13.36093 -13.23486 -12.94788 -12.85022 -12.56418 -12.44642 -12.25334 -12.09242 -11.83931 -11.69286 -11.60404 -11.46170 -11.16048 -11.12120 -10.96081 -10.76909 -10.40353 -10.32087 -10.23037 -9.63346 -9.52366 -9.42959 -9.30744 -8.49425 -8.15292 -7.97863 -6.43188 -3.84038 0.91661 2.00300 2.27187 2.83560 2.89008 3.16978 3.25836 3.31842 3.88741 4.05786 4.14508 4.21164 4.30913 4.52685 4.59371 4.65272 4.79430 4.79759 4.89309 5.08488 5.10859 5.18088 5.23576 5.24104 5.34133 5.35821 5.46511 5.50799 5.54846 5.66838 5.71351 5.74710 5.87716 5.90563 5.93021 6.09134 6.12603 6.24544 6.28946 6.37537 6.39460 7.05672 7.15643 7.53948 7.55704 7.69196 7.81639 8.04657 8.59377 9.16402 9.52525 10.03714 10.74483 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025584 B = 0.001822 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.150530 B =15363.954435 C =15636.244986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.110 3.890 3 N -0.253 5.253 4 N -0.278 5.278 5 C -0.004 4.004 6 C -0.190 4.190 7 C -0.037 4.037 8 C 0.591 3.409 9 O -0.537 6.537 10 N -0.706 5.706 11 C 0.145 3.855 12 H 0.089 0.911 13 C -0.158 4.158 14 C 0.076 3.924 15 H 0.049 0.951 16 C -0.145 4.145 17 N -0.656 5.656 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.187 0.813 36 H 0.160 0.840 37 H 0.403 0.597 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.351 0.649 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.188 -3.074 26.224 26.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.041 5.041 4 N -0.111 5.111 5 C -0.180 4.180 6 C -0.220 4.220 7 C -0.166 4.166 8 C 0.376 3.624 9 O -0.414 6.414 10 N -0.359 5.359 11 C 0.040 3.960 12 H 0.107 0.893 13 C -0.216 4.216 14 C -0.035 4.035 15 H 0.067 0.933 16 C -0.203 4.203 17 N -0.290 5.290 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.115 0.885 35 H 0.204 0.796 36 H 0.178 0.822 37 H 0.240 0.760 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.172 0.828 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.324 -5.090 26.468 27.157 hybrid contribution -0.796 1.434 -1.052 1.949 sum 2.528 -3.656 25.416 25.802 Atomic orbital electron populations 1.22074 0.93297 1.03628 1.03103 1.22232 0.96402 0.76410 1.05874 1.45888 1.43975 1.12409 1.01834 1.73213 1.18657 1.05268 1.13913 1.23583 1.04199 0.95172 0.95008 1.22271 1.07233 0.96684 0.95764 1.21438 1.10995 0.94255 0.89918 1.16908 0.78025 0.84392 0.83066 1.90796 1.46320 1.20456 1.83822 1.45851 1.59652 1.24523 1.05875 1.21151 1.00786 0.95449 0.78584 0.89344 1.22135 0.97681 0.98787 1.03015 1.21726 0.98319 0.94645 0.88789 0.93338 1.21896 0.98061 1.00534 0.99800 1.60192 1.59426 1.06051 1.03298 1.21736 0.97890 0.95406 0.93175 1.19773 0.84452 0.86865 0.86308 1.90529 1.51599 1.21770 1.82755 1.41860 1.54727 1.16677 1.06744 1.19702 1.38758 1.02355 0.82041 0.87897 1.25266 0.96912 0.95283 1.00519 1.69611 1.41863 1.08129 1.34710 0.85854 0.78823 0.78057 0.81535 1.20430 1.20926 1.19390 0.91852 0.91569 0.89988 0.86379 0.88499 0.79646 0.82222 0.76002 0.92031 0.92691 0.89801 0.91886 0.93242 0.91063 0.82803 0.93782 0.89483 0.77475 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 10.24 37.16 0.38 -0.84 16 2 C 0.11 0.91 6.58 -4.05 -0.03 0.89 16 3 N -0.25 -2.56 3.35 -57.14 -0.19 -2.75 16 4 N -0.28 -2.85 11.90 30.59 0.36 -2.48 16 5 C 0.00 -0.03 12.03 -17.42 -0.21 -0.24 16 6 C -0.19 -1.49 10.50 -38.98 -0.41 -1.90 16 7 C -0.04 -0.37 6.96 -82.06 -0.57 -0.94 16 8 C 0.59 6.40 7.75 -12.64 -0.10 6.30 16 9 O -0.54 -7.14 14.34 5.25 0.08 -7.07 16 10 N -0.71 -6.32 4.97 -54.97 -0.27 -6.60 16 11 C 0.14 1.52 2.27 -67.93 -0.15 1.37 16 12 H 0.09 1.06 7.65 -51.93 -0.40 0.66 16 13 C -0.16 -1.76 9.02 37.16 0.34 -1.43 16 14 C 0.08 0.83 2.66 -67.71 -0.18 0.65 16 15 H 0.05 0.52 7.80 -51.93 -0.40 0.11 16 16 C -0.14 -1.37 8.93 37.16 0.33 -1.04 16 17 N -0.66 -9.66 5.14 -108.00 -0.55 -10.22 16 18 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 19 C 0.44 10.12 7.82 -10.99 -0.09 10.03 16 20 O -0.58 -15.46 15.78 5.54 0.09 -15.37 16 21 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 22 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 26 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.12 1.07 6.19 -51.93 -0.32 0.75 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.19 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.16 0.77 7.63 -52.49 -0.40 0.37 16 37 H 0.40 2.70 5.66 -40.82 -0.23 2.46 16 38 H 0.06 0.64 6.57 -51.93 -0.34 0.30 16 39 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.08 1.05 7.17 -51.93 -0.37 0.68 16 41 H 0.06 0.64 7.45 -51.93 -0.39 0.26 16 42 H 0.05 0.33 6.29 -51.93 -0.33 0.00 16 43 H 0.07 0.73 6.56 -51.93 -0.34 0.39 16 44 H 0.35 5.48 7.62 -39.29 -0.30 5.18 16 45 H 0.04 0.67 8.05 -51.93 -0.42 0.25 16 46 H 0.09 1.33 7.43 -51.93 -0.39 0.94 16 47 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 394.73 15.07 5.95 5.95 Total: -1.00 -33.29 394.73 -6.85 -40.14 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -6.99 Total: 14.46 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -0.96 Total: 5.73 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.01 Total: -59.75 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.16 Total: -22.44 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.29 -6.85 -40.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275388375.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.857 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds