Wall clock time and date at job start Tue Mar 31 2020 20:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47595 * 2 1 4 4 N 1.28441 * 125.18872 * 264.53856 * 3 2 1 5 5 C 1.30868 * 110.92634 * 180.02562 * 4 3 2 6 6 C 1.39675 * 107.85730 * 359.76710 * 5 4 3 7 7 C 1.36595 * 125.19094 * 84.55008 * 3 2 1 8 8 C 1.47161 * 126.88147 * 359.95398 * 7 3 2 9 9 O 1.21624 * 120.00277 * 5.34472 * 8 7 3 10 10 N 1.34778 * 119.99721 * 185.07444 * 8 7 3 11 11 C 1.46500 * 119.99934 * 175.00728 * 10 8 7 12 12 H 1.09000 * 109.47623 * 325.00483 * 11 10 8 13 13 C 1.53004 * 109.47047 * 84.99820 * 11 10 8 14 14 C 1.53001 * 109.47423 * 204.99955 * 11 10 8 15 15 H 1.09000 * 109.46867 * 299.99900 * 14 11 10 16 16 C 1.52995 * 109.47040 * 59.99708 * 14 11 10 17 17 N 1.46900 * 109.47203 * 180.02562 * 14 11 10 18 18 C 1.46901 * 110.99689 * 155.00051 * 17 14 11 19 19 C 1.50704 * 109.46812 * 179.97438 * 18 17 14 20 20 O 1.21291 * 120.00266 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99520 * 180.02562 * 19 18 17 22 22 C 1.37106 * 119.99643 * 179.97438 * 21 19 18 23 23 H 1.07994 * 119.99971 * 359.97438 * 22 21 19 24 24 C 1.38945 * 119.99755 * 180.02562 * 22 21 19 25 25 N 1.31415 * 120.00403 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99687 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46840 * 60.00163 * 26 24 22 28 28 H 1.48503 * 109.46774 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46916 * 299.99671 * 26 24 22 30 30 H 1.09003 * 109.46632 * 299.99657 * 1 2 3 31 31 H 1.08995 * 109.47352 * 59.99670 * 1 2 3 32 32 H 1.09003 * 109.47280 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47080 * 240.00233 * 2 1 3 34 34 H 1.08999 * 109.47816 * 120.00468 * 2 1 3 35 35 H 1.07992 * 126.06913 * 180.02562 * 5 4 3 36 36 H 1.08003 * 127.31364 * 180.26625 * 6 5 4 37 37 H 0.97000 * 120.00099 * 355.00844 * 10 8 7 38 38 H 1.09000 * 109.47259 * 60.00090 * 13 11 10 39 39 H 1.09001 * 109.47276 * 179.97438 * 13 11 10 40 40 H 1.08995 * 109.47378 * 300.00148 * 13 11 10 41 41 H 1.09008 * 109.46809 * 60.00297 * 16 14 11 42 42 H 1.08995 * 109.47300 * 180.02562 * 16 14 11 43 43 H 1.09001 * 109.47480 * 300.00508 * 16 14 11 44 44 H 1.00896 * 110.99962 * 31.04939 * 17 14 11 45 45 H 1.09002 * 109.47151 * 299.99679 * 18 17 14 46 46 H 1.08994 * 109.47333 * 59.99888 * 18 17 14 47 47 H 0.96998 * 120.00321 * 359.97438 * 21 19 18 48 48 H 0.96993 * 119.99814 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3594 2.0457 -1.0449 5 6 2.7539 3.2515 -0.7239 6 6 2.6533 3.3800 0.6633 7 6 2.1809 2.1587 1.1113 8 6 1.9036 1.7763 2.5050 9 8 1.5769 0.6349 2.7690 10 7 2.0171 2.6896 3.4896 11 6 1.6363 2.3400 4.8604 12 1 0.7836 1.6614 4.8389 13 6 2.8141 1.6567 5.5584 14 6 1.2580 3.6104 5.6245 15 1 2.1108 4.2889 5.6461 16 6 0.0804 4.2936 4.9265 17 7 0.8768 3.2599 6.9992 18 6 1.0792 4.3965 7.9076 19 6 0.6777 4.0002 9.3051 20 8 0.2641 2.8809 9.5229 21 7 0.7782 4.8895 10.3128 22 6 0.4124 4.5292 11.5841 23 1 0.0434 3.5329 11.7778 24 6 0.5155 5.4462 12.6228 25 7 0.9641 6.6587 12.3869 26 14 0.0179 4.9549 14.3551 27 1 0.8505 3.8099 14.8033 28 1 0.2219 6.1041 15.2733 29 1 -1.4136 4.5603 14.3657 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.0926 4.0135 -1.4102 36 1 2.8943 4.2476 1.2596 37 1 2.3509 3.5784 3.2907 38 1 3.6669 2.3352 5.5800 39 1 2.5309 1.3970 6.5784 40 1 3.0836 0.7517 5.0141 41 1 -0.7725 3.6151 4.9049 42 1 -0.1889 5.1989 5.4705 43 1 0.3636 4.5538 3.9066 44 1 1.3824 2.4473 7.3185 45 1 2.1301 4.6856 7.8993 46 1 0.4684 5.2373 7.5792 47 1 1.1092 5.7845 10.1386 48 1 1.0356 7.2988 13.1121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275388395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:50 Heat of formation + Delta-G solvation = 5.139007 kcal Electronic energy + Delta-G solvation = -28833.882074 eV Core-core repulsion = 24732.632457 eV Total energy + Delta-G solvation = -4101.249617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.88169 -40.01912 -38.46889 -37.30521 -35.10172 -34.37447 -33.81808 -31.92418 -31.23262 -30.24432 -30.07778 -29.80087 -26.44119 -24.81447 -24.29787 -23.89449 -22.73872 -21.64558 -20.70445 -20.01898 -19.32447 -18.36231 -17.90400 -16.81282 -16.39424 -16.31018 -15.89394 -15.44967 -15.23804 -14.94399 -14.73494 -14.50293 -14.21525 -14.10890 -13.92826 -13.70249 -13.60439 -13.31653 -13.06181 -12.95806 -12.51056 -12.43169 -12.40997 -11.95611 -11.75049 -11.66617 -11.61702 -11.47798 -11.37127 -11.16521 -11.03870 -10.69232 -10.45221 -10.34540 -10.22490 -9.63440 -9.51448 -9.43331 -9.31633 -8.48548 -8.14104 -7.97798 -6.43068 -3.83968 0.92057 1.99701 2.27438 2.81686 2.90070 3.19407 3.25178 3.29692 3.88661 4.06575 4.14704 4.21048 4.30404 4.53173 4.59712 4.65651 4.78025 4.79864 4.89246 5.05205 5.11159 5.18150 5.23396 5.24633 5.31277 5.34287 5.42289 5.47333 5.58097 5.63985 5.70749 5.74682 5.80585 5.91190 5.93649 6.08380 6.09707 6.16331 6.21982 6.31451 6.37872 7.07116 7.15436 7.53891 7.59113 7.69035 7.81934 8.04546 8.59515 9.16358 9.52429 10.03784 10.74517 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030688 B = 0.001814 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.195175 B =15435.125879 C =15854.308412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.112 3.888 3 N -0.253 5.253 4 N -0.278 5.278 5 C -0.005 4.005 6 C -0.190 4.190 7 C -0.037 4.037 8 C 0.593 3.407 9 O -0.535 6.535 10 N -0.704 5.704 11 C 0.144 3.856 12 H 0.101 0.899 13 C -0.171 4.171 14 C 0.077 3.923 15 H 0.048 0.952 16 C -0.141 4.141 17 N -0.660 5.660 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.186 0.814 36 H 0.160 0.840 37 H 0.402 0.598 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.352 0.648 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.097 -4.356 -25.788 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.041 5.041 4 N -0.111 5.111 5 C -0.180 4.180 6 C -0.220 4.220 7 C -0.165 4.165 8 C 0.378 3.622 9 O -0.412 6.412 10 N -0.356 5.356 11 C 0.040 3.960 12 H 0.119 0.881 13 C -0.230 4.230 14 C -0.033 4.033 15 H 0.066 0.934 16 C -0.199 4.199 17 N -0.296 5.296 18 C -0.081 4.081 19 C 0.225 3.775 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.203 0.797 36 H 0.178 0.822 37 H 0.237 0.763 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.175 0.825 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.710 -6.521 -26.285 27.334 hybrid contribution 1.279 1.595 1.412 2.484 sum 4.989 -4.926 -24.873 25.842 Atomic orbital electron populations 1.22086 0.93270 1.03728 1.03094 1.22191 0.96302 0.76451 1.05766 1.45890 1.43854 1.12383 1.01989 1.73226 1.16724 1.07281 1.13859 1.23578 1.04834 0.94498 0.95083 1.22265 1.06727 0.97134 0.95829 1.21423 1.11535 0.93583 0.90000 1.16869 0.77354 0.85096 0.82913 1.90808 1.47820 1.18797 1.83736 1.45667 1.66315 1.15735 1.07897 1.21142 0.98478 0.96937 0.79439 0.88070 1.22270 0.97927 1.01340 1.01423 1.21739 0.97009 0.94617 0.89970 0.93415 1.21818 0.98351 1.00979 0.98710 1.60178 1.62991 1.07039 0.99413 1.21726 0.99412 0.94235 0.92747 1.19782 0.85302 0.86646 0.85738 1.90530 1.50921 1.21305 1.83915 1.41853 1.57285 1.13566 1.07252 1.19656 1.40232 0.99877 0.83171 0.87951 1.25264 0.97304 0.95041 1.00328 1.69601 1.46268 1.04558 1.33887 0.85913 0.79282 0.77817 0.81183 1.19916 1.20985 1.19868 0.91430 0.91983 0.89920 0.88282 0.86719 0.79671 0.82220 0.76265 0.92375 0.90616 0.91500 0.91723 0.92163 0.92879 0.82547 0.93769 0.89492 0.77464 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 10.24 37.16 0.38 -0.85 16 2 C 0.11 0.92 6.41 -4.04 -0.03 0.89 16 3 N -0.25 -2.53 3.35 -57.14 -0.19 -2.72 16 4 N -0.28 -2.83 11.90 30.59 0.36 -2.46 16 5 C 0.00 -0.04 12.03 -17.43 -0.21 -0.25 16 6 C -0.19 -1.45 10.50 -38.99 -0.41 -1.86 16 7 C -0.04 -0.36 6.96 -82.06 -0.57 -0.93 16 8 C 0.59 6.26 7.75 -12.64 -0.10 6.16 16 9 O -0.53 -7.00 14.39 5.26 0.08 -6.93 16 10 N -0.70 -6.11 4.37 -54.96 -0.24 -6.35 16 11 C 0.14 1.51 2.25 -67.93 -0.15 1.36 16 12 H 0.10 1.28 7.66 -51.93 -0.40 0.88 16 13 C -0.17 -1.80 9.25 37.16 0.34 -1.46 16 14 C 0.08 0.86 2.28 -67.71 -0.15 0.70 16 15 H 0.05 0.47 7.80 -51.93 -0.40 0.07 16 16 C -0.14 -1.48 9.26 37.16 0.34 -1.14 16 17 N -0.66 -10.03 5.93 -107.99 -0.64 -10.67 16 18 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 19 C 0.44 10.17 7.82 -10.98 -0.09 10.08 16 20 O -0.58 -15.61 15.78 5.55 0.09 -15.52 16 21 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 22 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16 26 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 29 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 30 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.11 1.01 6.53 -51.93 -0.34 0.67 16 35 H 0.19 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.16 0.73 7.58 -52.48 -0.40 0.33 16 37 H 0.40 2.51 7.42 -40.82 -0.30 2.21 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.86 6.21 -51.93 -0.32 0.54 16 40 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 41 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 42 H 0.06 0.66 7.45 -51.93 -0.39 0.28 16 43 H 0.05 0.44 7.45 -51.93 -0.39 0.05 16 44 H 0.35 5.55 5.86 -39.29 -0.23 5.32 16 45 H 0.04 0.66 8.05 -51.93 -0.42 0.24 16 46 H 0.09 1.35 7.44 -51.93 -0.39 0.96 16 47 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 398.56 15.07 6.01 6.01 Total: -1.00 -33.51 398.56 -6.99 -40.50 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -7.18 Total: 14.27 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -0.91 Total: 5.61 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.04 Total: -59.84 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.16 Total: -22.45 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.51 -6.99 -40.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275388395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.641 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds