Wall clock time and date at job start Tue Mar 31 2020 20:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47595 * 2 1 4 4 N 1.28441 * 125.18872 * 264.53856 * 3 2 1 5 5 C 1.30868 * 110.92634 * 180.02562 * 4 3 2 6 6 C 1.39675 * 107.85730 * 359.76710 * 5 4 3 7 7 C 1.36595 * 125.19094 * 84.55008 * 3 2 1 8 8 C 1.47161 * 126.88147 * 359.95398 * 7 3 2 9 9 O 1.21624 * 120.00277 * 5.34472 * 8 7 3 10 10 N 1.34778 * 119.99721 * 185.07444 * 8 7 3 11 11 C 1.46500 * 119.99934 * 175.00728 * 10 8 7 12 12 H 1.09000 * 109.47623 * 325.00483 * 11 10 8 13 13 C 1.53004 * 109.47047 * 84.99820 * 11 10 8 14 14 C 1.53001 * 109.47423 * 204.99955 * 11 10 8 15 15 H 1.09000 * 109.46867 * 299.99900 * 14 11 10 16 16 C 1.52995 * 109.47040 * 59.99708 * 14 11 10 17 17 N 1.46900 * 109.47203 * 180.02562 * 14 11 10 18 18 C 1.46901 * 110.99689 * 155.00051 * 17 14 11 19 19 C 1.50704 * 109.46812 * 179.97438 * 18 17 14 20 20 O 1.21291 * 120.00266 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99520 * 180.02562 * 19 18 17 22 22 C 1.37106 * 119.99643 * 179.97438 * 21 19 18 23 23 H 1.07994 * 119.99971 * 359.97438 * 22 21 19 24 24 C 1.38945 * 119.99755 * 180.02562 * 22 21 19 25 25 N 1.31415 * 120.00403 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99687 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46840 * 60.00163 * 26 24 22 28 28 H 1.48503 * 109.46774 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46916 * 299.99671 * 26 24 22 30 30 H 1.09003 * 109.46632 * 299.99657 * 1 2 3 31 31 H 1.08995 * 109.47352 * 59.99670 * 1 2 3 32 32 H 1.09003 * 109.47280 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47080 * 240.00233 * 2 1 3 34 34 H 1.08999 * 109.47816 * 120.00468 * 2 1 3 35 35 H 1.07992 * 126.06913 * 180.02562 * 5 4 3 36 36 H 1.08003 * 127.31364 * 180.26625 * 6 5 4 37 37 H 0.97000 * 120.00099 * 355.00844 * 10 8 7 38 38 H 1.09000 * 109.47259 * 60.00090 * 13 11 10 39 39 H 1.09001 * 109.47276 * 179.97438 * 13 11 10 40 40 H 1.08995 * 109.47378 * 300.00148 * 13 11 10 41 41 H 1.09008 * 109.46809 * 60.00297 * 16 14 11 42 42 H 1.08995 * 109.47300 * 180.02562 * 16 14 11 43 43 H 1.09001 * 109.47480 * 300.00508 * 16 14 11 44 44 H 1.00896 * 110.99962 * 31.04939 * 17 14 11 45 45 H 1.09002 * 109.47151 * 299.99679 * 18 17 14 46 46 H 1.08994 * 109.47333 * 59.99888 * 18 17 14 47 47 H 0.96998 * 120.00321 * 359.97438 * 21 19 18 48 48 H 0.96993 * 119.99814 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3594 2.0457 -1.0449 5 6 2.7539 3.2515 -0.7239 6 6 2.6533 3.3800 0.6633 7 6 2.1809 2.1587 1.1113 8 6 1.9036 1.7763 2.5050 9 8 1.5769 0.6349 2.7690 10 7 2.0171 2.6896 3.4896 11 6 1.6363 2.3400 4.8604 12 1 0.7836 1.6614 4.8389 13 6 2.8141 1.6567 5.5584 14 6 1.2580 3.6104 5.6245 15 1 2.1108 4.2889 5.6461 16 6 0.0804 4.2936 4.9265 17 7 0.8768 3.2599 6.9992 18 6 1.0792 4.3965 7.9076 19 6 0.6777 4.0002 9.3051 20 8 0.2641 2.8809 9.5229 21 7 0.7782 4.8895 10.3128 22 6 0.4124 4.5292 11.5841 23 1 0.0434 3.5329 11.7778 24 6 0.5155 5.4462 12.6228 25 7 0.9641 6.6587 12.3869 26 14 0.0179 4.9549 14.3551 27 1 0.8505 3.8099 14.8033 28 1 0.2219 6.1041 15.2733 29 1 -1.4136 4.5603 14.3657 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.0926 4.0135 -1.4102 36 1 2.8943 4.2476 1.2596 37 1 2.3509 3.5784 3.2907 38 1 3.6669 2.3352 5.5800 39 1 2.5309 1.3970 6.5784 40 1 3.0836 0.7517 5.0141 41 1 -0.7725 3.6151 4.9049 42 1 -0.1889 5.1989 5.4705 43 1 0.3636 4.5538 3.9066 44 1 1.3824 2.4473 7.3185 45 1 2.1301 4.6856 7.8993 46 1 0.4684 5.2373 7.5792 47 1 1.1092 5.7845 10.1386 48 1 1.0356 7.2988 13.1121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275388395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:49 Heat of formation + Delta-G solvation = -20.366496 kcal Electronic energy + Delta-G solvation = -28834.988076 eV Core-core repulsion = 24732.632457 eV Total energy + Delta-G solvation = -4102.355619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.52810 -40.89059 -40.12472 -38.46092 -36.09709 -35.72681 -35.10783 -33.28175 -32.73397 -31.18431 -30.74702 -30.60800 -28.02026 -25.90539 -25.53242 -24.70383 -23.54500 -22.38049 -21.57562 -21.07854 -20.78153 -19.91369 -19.11362 -17.80019 -17.60500 -17.14951 -16.99710 -16.63830 -16.39812 -15.99551 -15.86944 -15.61964 -15.47177 -15.35268 -14.80399 -14.75097 -14.69652 -14.18038 -14.10860 -13.95251 -13.55448 -13.52469 -13.46269 -13.12893 -13.02918 -12.89025 -12.67522 -12.59962 -12.42025 -12.32691 -12.28686 -12.11812 -11.82001 -11.62728 -11.48959 -11.18409 -10.41249 -10.32569 -10.10898 -10.00142 -9.99247 -9.33920 -8.45442 -5.93860 0.22165 1.33928 1.40549 1.42653 1.53194 1.66697 2.05283 2.07643 2.15807 2.30889 2.97526 3.22044 3.47925 3.52862 3.57584 3.63629 3.95319 3.98825 4.08853 4.17392 4.20207 4.28139 4.32757 4.43405 4.48412 4.54941 4.61018 4.62429 4.67181 4.72680 4.82318 4.86607 4.88569 4.95579 5.01820 5.07797 5.21125 5.32730 5.41033 5.42705 5.57367 5.75145 5.90809 6.11597 6.36870 6.40350 6.61808 7.01594 7.11467 7.14163 7.58112 8.13720 8.71535 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.030688 B = 0.001814 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.195175 B =15435.125879 C =15854.308412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.110 3.890 3 N -0.265 5.265 4 N -0.302 5.302 5 C -0.008 4.008 6 C -0.176 4.176 7 C -0.060 4.060 8 C 0.592 3.408 9 O -0.568 6.568 10 N -0.689 5.689 11 C 0.155 3.845 12 H 0.075 0.925 13 C -0.166 4.166 14 C 0.083 3.917 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.679 5.679 18 C 0.067 3.933 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.334 4.334 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.273 1.273 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.216 0.784 36 H 0.194 0.806 37 H 0.418 0.582 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.346 0.654 45 H 0.073 0.927 46 H 0.106 0.894 47 H 0.397 0.603 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.140 -2.516 -26.899 27.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.010 4.010 3 N -0.054 5.054 4 N -0.135 5.135 5 C -0.183 4.183 6 C -0.205 4.205 7 C -0.188 4.188 8 C 0.378 3.622 9 O -0.447 6.447 10 N -0.341 5.341 11 C 0.049 3.951 12 H 0.093 0.907 13 C -0.225 4.225 14 C -0.026 4.026 15 H 0.093 0.907 16 C -0.197 4.197 17 N -0.315 5.315 18 C -0.065 4.065 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.233 0.767 36 H 0.211 0.789 37 H 0.256 0.744 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.168 0.832 45 H 0.091 0.909 46 H 0.124 0.876 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.771 -4.631 -27.423 28.218 hybrid contribution 0.965 1.017 1.668 2.179 sum 5.736 -3.615 -25.755 26.632 Atomic orbital electron populations 1.22016 0.93007 1.04467 1.01840 1.22239 0.96502 0.76329 1.05915 1.46040 1.44427 1.12821 1.02093 1.73209 1.17545 1.08414 1.14326 1.24197 1.03815 0.94328 0.95945 1.22714 1.04727 0.97071 0.95966 1.21501 1.13102 0.94729 0.89486 1.17054 0.76785 0.84782 0.83568 1.90794 1.49354 1.20283 1.84250 1.45430 1.65757 1.16198 1.06753 1.20865 0.97593 0.96306 0.80301 0.90702 1.22207 0.98419 1.01321 1.00510 1.21767 0.98164 0.95098 0.87605 0.90747 1.21821 0.97400 1.00217 1.00212 1.60161 1.63899 1.06447 1.00989 1.21582 1.01162 0.95033 0.88743 1.20926 0.83333 0.85597 0.87751 1.90501 1.52349 1.23133 1.85130 1.41916 1.57877 1.14131 1.07052 1.19612 1.42188 0.99446 0.85114 0.90429 1.26010 0.96785 0.94910 1.03531 1.69656 1.46197 1.05011 1.35086 0.85015 0.78716 0.77878 0.76890 1.19747 1.19473 1.19870 0.93664 0.91974 0.88264 0.86763 0.87864 0.76721 0.78916 0.74413 0.90682 0.91769 0.92530 0.93745 0.92304 0.90175 0.83171 0.90943 0.87607 0.76880 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 10.24 71.98 0.74 -1.64 16 2 C 0.11 1.81 6.41 86.38 0.55 2.36 16 3 N -0.27 -5.14 3.35 -334.69 -1.12 -6.26 16 4 N -0.30 -5.74 11.90 -57.14 -0.68 -6.42 16 5 C -0.01 -0.10 12.03 85.18 1.02 0.92 16 6 C -0.18 -2.17 10.50 22.66 0.24 -1.93 16 7 C -0.06 -1.09 6.96 40.78 0.28 -0.81 16 8 C 0.59 12.12 7.75 86.59 0.67 12.79 16 9 O -0.57 -15.29 14.39 -4.11 -0.06 -15.35 16 10 N -0.69 -10.67 4.37 -446.05 -1.95 -12.62 16 11 C 0.15 3.09 2.25 44.99 0.10 3.19 16 12 H 0.07 1.94 7.66 -2.39 -0.02 1.92 16 13 C -0.17 -3.37 9.25 71.98 0.67 -2.70 16 14 C 0.08 1.66 2.28 44.91 0.10 1.76 16 15 H 0.07 1.16 7.80 -2.39 -0.02 1.14 16 16 C -0.14 -2.62 9.26 71.98 0.67 -1.95 16 17 N -0.68 -19.92 5.93 -495.58 -2.94 -22.86 16 18 C 0.07 2.13 5.97 85.56 0.51 2.64 16 19 C 0.44 20.24 7.82 87.66 0.69 20.92 16 20 O -0.62 -34.29 15.78 -3.06 -0.05 -34.34 16 21 N -0.57 -28.77 5.29 -306.98 -1.62 -30.39 16 22 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 23 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 24 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 25 N -0.92 -48.85 13.05 21.66 0.28 -48.56 16 26 Si 0.99 42.66 29.55 68.60 2.03 44.69 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 28 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 29 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 30 H 0.04 0.89 8.07 -2.39 -0.02 0.87 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.10 1.92 6.53 -2.39 -0.02 1.91 16 35 H 0.22 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.19 0.88 7.58 -2.91 -0.02 0.86 16 37 H 0.42 3.77 7.42 -92.71 -0.69 3.08 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.46 6.21 -2.39 -0.01 1.45 16 40 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 41 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.06 1.14 7.45 -2.39 -0.02 1.12 16 43 H 0.08 1.07 7.45 -2.39 -0.02 1.05 16 44 H 0.35 10.86 5.86 -89.70 -0.53 10.34 16 45 H 0.07 1.93 8.05 -2.39 -0.02 1.91 16 46 H 0.11 3.01 7.44 -2.39 -0.02 2.99 16 47 H 0.40 18.78 7.90 -92.71 -0.73 18.04 16 48 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -74.66 398.56 0.47 -74.19 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: -0.94 Total: 40.55 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 7.52 Total: 17.37 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -8.03 Total: -127.11 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -0.11 Total: -49.68 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -74.66 0.47 -74.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275388395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.824 kcal (2) G-P(sol) polarization free energy of solvation -74.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds