Wall clock time and date at job start Tue Mar 31 2020 20:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47244 * 2 1 4 4 N 1.28439 * 125.19263 * 85.71637 * 3 2 1 5 5 C 1.30862 * 110.92903 * 179.97438 * 4 3 2 6 6 C 1.39665 * 107.86085 * 0.26539 * 5 4 3 7 7 C 1.36601 * 125.19165 * 265.69482 * 3 2 1 8 8 C 1.47165 * 126.87862 * 359.97438 * 7 3 2 9 9 O 1.21625 * 120.00310 * 5.26968 * 8 7 3 10 10 N 1.34778 * 119.99700 * 185.26923 * 8 7 3 11 11 C 1.46502 * 120.00050 * 185.15589 * 10 8 7 12 12 H 1.08993 * 109.47288 * 325.00292 * 11 10 8 13 13 C 1.52997 * 109.46809 * 85.00516 * 11 10 8 14 14 C 1.52996 * 109.47025 * 205.00240 * 11 10 8 15 15 H 1.08990 * 109.47514 * 65.00401 * 14 11 10 16 16 C 1.53004 * 109.47284 * 305.00007 * 14 11 10 17 17 N 1.46903 * 109.47089 * 185.00668 * 14 11 10 18 18 C 1.46907 * 110.99969 * 205.00131 * 17 14 11 19 19 C 1.50694 * 109.47105 * 179.97438 * 18 17 14 20 20 O 1.21300 * 120.00060 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00008 * 179.97438 * 19 18 17 22 22 C 1.37103 * 119.99830 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00520 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99969 * 180.02562 * 22 21 19 25 25 N 1.31416 * 119.99498 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00304 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47006 * 60.00182 * 26 24 22 28 28 H 1.48499 * 109.47345 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47223 * 300.00307 * 26 24 22 30 30 H 1.08998 * 109.46884 * 300.00312 * 1 2 3 31 31 H 1.08997 * 109.47175 * 59.99693 * 1 2 3 32 32 H 1.08992 * 109.46841 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47148 * 240.00111 * 2 1 3 34 34 H 1.09003 * 109.47193 * 119.99582 * 2 1 3 35 35 H 1.08006 * 126.06721 * 180.02562 * 5 4 3 36 36 H 1.08005 * 127.31723 * 179.73759 * 6 5 4 37 37 H 0.97001 * 119.99827 * 5.15864 * 10 8 7 38 38 H 1.08997 * 109.47841 * 59.99702 * 13 11 10 39 39 H 1.08998 * 109.47150 * 180.02562 * 13 11 10 40 40 H 1.09005 * 109.46842 * 299.99987 * 13 11 10 41 41 H 1.08996 * 109.47252 * 60.00472 * 16 14 11 42 42 H 1.09005 * 109.47129 * 180.02562 * 16 14 11 43 43 H 1.09002 * 109.47110 * 300.00171 * 16 14 11 44 44 H 1.00909 * 110.99726 * 328.94938 * 17 14 11 45 45 H 1.08995 * 109.46837 * 299.99672 * 18 17 14 46 46 H 1.09000 * 109.46762 * 59.99276 * 18 17 14 47 47 H 0.96999 * 120.00078 * 0.02562 * 21 19 18 48 48 H 0.97001 * 119.99825 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1912 2.1052 1.0467 5 6 2.6372 3.2927 0.7252 6 6 2.7592 3.3426 -0.6652 7 6 2.3598 2.0955 -1.1132 8 6 2.3084 1.6331 -2.5094 9 8 1.8410 0.5414 -2.7717 10 7 2.7793 2.4196 -3.4974 11 6 2.6262 2.0100 -4.8957 12 1 2.7163 0.9263 -4.9688 13 6 1.2504 2.4430 -5.4061 14 6 3.7156 2.6706 -5.7428 15 1 4.6917 2.2941 -5.4374 16 6 3.6682 4.1868 -5.5425 17 7 3.4913 2.3568 -7.1603 18 6 4.7456 2.4331 -7.9212 19 6 4.4766 2.1052 -9.3673 20 8 3.3506 1.8350 -9.7286 21 7 5.4868 2.1132 -10.2593 22 6 5.2421 1.8143 -11.5748 23 1 4.2398 1.5729 -11.8963 24 6 6.2838 1.8220 -12.4944 25 7 7.5036 2.1152 -12.1029 26 14 5.9504 1.4155 -14.2868 27 1 4.9749 2.3881 -14.8417 28 1 7.2182 1.4932 -15.0562 29 1 5.3929 0.0429 -14.3877 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.8663 4.0936 1.4128 36 1 3.0961 4.1763 -1.2635 37 1 3.2197 3.2568 -3.2827 38 1 1.1602 3.5268 -5.3330 39 1 1.1363 2.1379 -6.4463 40 1 0.4743 1.9724 -4.8025 41 1 3.8347 4.4197 -4.4908 42 1 4.4441 4.6574 -6.1464 43 1 2.6920 4.5633 -5.8480 44 1 3.0587 1.4514 -7.2661 45 1 5.1549 3.4406 -7.8468 46 1 5.4615 1.7191 -7.5141 47 1 6.3872 2.3296 -9.9704 48 1 8.2309 2.1202 -12.7448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275388397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:52 Heat of formation + Delta-G solvation = 6.772233 kcal Electronic energy + Delta-G solvation = -28778.717170 eV Core-core repulsion = 24677.538375 eV Total energy + Delta-G solvation = -4101.178795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.88280 -40.04325 -38.46483 -37.36618 -35.09464 -34.38740 -33.80900 -31.95740 -31.22623 -30.34639 -30.11662 -29.14195 -26.60809 -25.06336 -24.44398 -23.92212 -22.90101 -21.69136 -20.32131 -19.78505 -19.33447 -18.42116 -17.90078 -16.68887 -16.53669 -16.16531 -15.79976 -15.59269 -15.27573 -15.01611 -14.82307 -14.51857 -14.36107 -14.19810 -13.96764 -13.74641 -13.36913 -13.24702 -12.94579 -12.85295 -12.57655 -12.44919 -12.26358 -12.09335 -11.83908 -11.70796 -11.60504 -11.45635 -11.16162 -11.10274 -10.95293 -10.76131 -10.45149 -10.33741 -10.22421 -9.63685 -9.51175 -9.42737 -9.30318 -8.49239 -8.15136 -7.97670 -6.42931 -3.83795 0.91618 2.00259 2.27183 2.83618 2.88906 3.19451 3.25276 3.29705 3.88937 4.06197 4.14402 4.21048 4.30510 4.52743 4.59201 4.65179 4.79493 4.80185 4.89348 5.08432 5.11277 5.17944 5.23690 5.24074 5.33986 5.35590 5.46308 5.50911 5.54867 5.65627 5.70689 5.74820 5.86338 5.90525 5.93087 6.08593 6.12364 6.24489 6.28491 6.37220 6.38358 7.05527 7.15635 7.53942 7.55876 7.69177 7.81562 8.04613 8.59606 9.16468 9.52664 10.03945 10.74668 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027977 B = 0.001806 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.588972 B =15502.446049 C =15886.482562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.110 3.890 3 N -0.253 5.253 4 N -0.278 5.278 5 C -0.004 4.004 6 C -0.190 4.190 7 C -0.037 4.037 8 C 0.591 3.409 9 O -0.538 6.538 10 N -0.706 5.706 11 C 0.143 3.857 12 H 0.091 0.909 13 C -0.158 4.158 14 C 0.076 3.924 15 H 0.049 0.951 16 C -0.145 4.145 17 N -0.656 5.656 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.187 0.813 36 H 0.160 0.840 37 H 0.403 0.597 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.351 0.649 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 2.432 25.715 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.041 5.041 4 N -0.110 5.110 5 C -0.180 4.180 6 C -0.219 4.219 7 C -0.166 4.166 8 C 0.377 3.623 9 O -0.415 6.415 10 N -0.359 5.359 11 C 0.038 3.962 12 H 0.109 0.891 13 C -0.216 4.216 14 C -0.035 4.035 15 H 0.067 0.933 16 C -0.203 4.203 17 N -0.290 5.290 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.115 0.885 35 H 0.204 0.796 36 H 0.178 0.822 37 H 0.240 0.760 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.172 0.828 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.504 1.284 25.884 27.275 hybrid contribution 1.507 0.194 -0.942 1.788 sum -6.997 1.478 24.942 25.947 Atomic orbital electron populations 1.22069 0.93295 1.03619 1.03086 1.22237 0.96409 0.76409 1.05894 1.45888 1.43966 1.12407 1.01844 1.73210 1.18673 1.05245 1.13918 1.23581 1.04192 0.95191 0.95010 1.22264 1.07196 0.96707 0.95760 1.21438 1.10981 0.94271 0.89918 1.16909 0.78125 0.84259 0.83034 1.90794 1.46202 1.20606 1.83887 1.45844 1.59703 1.24475 1.05878 1.21157 0.96214 1.00190 0.78592 0.89124 1.22141 0.94922 1.01912 1.02623 1.21718 0.96313 0.96610 0.88815 0.93341 1.21897 1.03708 0.94796 0.99892 1.60206 1.24540 1.38115 1.06108 1.21736 0.90890 1.01754 0.93826 1.19772 0.86014 0.84889 0.86744 1.90529 1.22292 1.53897 1.79964 1.41853 1.09316 1.60767 1.08029 1.19656 0.96450 1.43759 0.83071 0.87950 1.25270 0.94736 0.97378 1.00576 1.69606 0.99810 1.48831 1.36068 0.85910 0.77440 0.79211 0.81611 1.19877 1.20990 1.19913 0.91865 0.91562 0.89994 0.86379 0.88491 0.79646 0.82217 0.75997 0.91945 0.89711 0.92922 0.93247 0.91892 0.91056 0.82804 0.89485 0.93787 0.77470 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 10.24 37.16 0.38 -0.83 16 2 C 0.11 0.91 6.59 -4.04 -0.03 0.89 16 3 N -0.25 -2.56 3.35 -57.14 -0.19 -2.75 16 4 N -0.28 -2.85 11.90 30.59 0.36 -2.48 16 5 C 0.00 -0.03 12.03 -17.43 -0.21 -0.24 16 6 C -0.19 -1.48 10.50 -38.99 -0.41 -1.89 16 7 C -0.04 -0.37 6.96 -82.06 -0.57 -0.94 16 8 C 0.59 6.42 7.75 -12.64 -0.10 6.32 16 9 O -0.54 -7.20 14.30 5.26 0.08 -7.12 16 10 N -0.71 -6.34 4.97 -54.97 -0.27 -6.61 16 11 C 0.14 1.50 2.35 -67.93 -0.16 1.34 16 12 H 0.09 1.10 7.51 -51.93 -0.39 0.71 16 13 C -0.16 -1.74 9.01 37.16 0.33 -1.40 16 14 C 0.08 0.83 2.66 -67.71 -0.18 0.65 16 15 H 0.05 0.52 7.80 -51.93 -0.40 0.12 16 16 C -0.15 -1.37 8.93 37.16 0.33 -1.04 16 17 N -0.66 -9.68 5.14 -107.99 -0.55 -10.23 16 18 C 0.05 0.84 5.97 -4.98 -0.03 0.81 16 19 C 0.44 10.13 7.82 -10.99 -0.09 10.04 16 20 O -0.58 -15.46 15.78 5.54 0.09 -15.38 16 21 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 22 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 24 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 25 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16 26 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.12 1.08 6.19 -51.93 -0.32 0.76 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.19 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.16 0.76 7.63 -52.48 -0.40 0.36 16 37 H 0.40 2.70 5.66 -40.82 -0.23 2.47 16 38 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 39 H 0.08 1.06 7.17 -51.93 -0.37 0.68 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.33 6.29 -51.93 -0.33 0.00 16 42 H 0.06 0.64 7.45 -51.93 -0.39 0.26 16 43 H 0.07 0.72 6.57 -51.93 -0.34 0.38 16 44 H 0.35 5.49 7.61 -39.29 -0.30 5.19 16 45 H 0.09 1.33 7.43 -51.93 -0.39 0.95 16 46 H 0.04 0.67 8.05 -51.93 -0.42 0.25 16 47 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -33.28 394.67 -6.85 -40.14 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -6.99 Total: 14.50 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -0.96 Total: 5.78 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.01 Total: -59.79 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.16 Total: -22.50 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.28 -6.85 -40.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275388397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.909 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds