Wall clock time and date at job start Tue Mar 31 2020 20:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47244 * 2 1 4 4 N 1.28439 * 125.19263 * 85.71637 * 3 2 1 5 5 C 1.30862 * 110.92903 * 179.97438 * 4 3 2 6 6 C 1.39665 * 107.86085 * 0.26539 * 5 4 3 7 7 C 1.36601 * 125.19165 * 265.69482 * 3 2 1 8 8 C 1.47165 * 126.87862 * 359.97438 * 7 3 2 9 9 O 1.21625 * 120.00310 * 5.26968 * 8 7 3 10 10 N 1.34778 * 119.99700 * 185.26923 * 8 7 3 11 11 C 1.46502 * 120.00050 * 185.15589 * 10 8 7 12 12 H 1.08993 * 109.47288 * 325.00292 * 11 10 8 13 13 C 1.52997 * 109.46809 * 85.00516 * 11 10 8 14 14 C 1.52996 * 109.47025 * 205.00240 * 11 10 8 15 15 H 1.08990 * 109.47514 * 65.00401 * 14 11 10 16 16 C 1.53004 * 109.47284 * 305.00007 * 14 11 10 17 17 N 1.46903 * 109.47089 * 185.00668 * 14 11 10 18 18 C 1.46907 * 110.99969 * 205.00131 * 17 14 11 19 19 C 1.50694 * 109.47105 * 179.97438 * 18 17 14 20 20 O 1.21300 * 120.00060 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00008 * 179.97438 * 19 18 17 22 22 C 1.37103 * 119.99830 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00520 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99969 * 180.02562 * 22 21 19 25 25 N 1.31416 * 119.99498 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00304 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47006 * 60.00182 * 26 24 22 28 28 H 1.48499 * 109.47345 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47223 * 300.00307 * 26 24 22 30 30 H 1.08998 * 109.46884 * 300.00312 * 1 2 3 31 31 H 1.08997 * 109.47175 * 59.99693 * 1 2 3 32 32 H 1.08992 * 109.46841 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47148 * 240.00111 * 2 1 3 34 34 H 1.09003 * 109.47193 * 119.99582 * 2 1 3 35 35 H 1.08006 * 126.06721 * 180.02562 * 5 4 3 36 36 H 1.08005 * 127.31723 * 179.73759 * 6 5 4 37 37 H 0.97001 * 119.99827 * 5.15864 * 10 8 7 38 38 H 1.08997 * 109.47841 * 59.99702 * 13 11 10 39 39 H 1.08998 * 109.47150 * 180.02562 * 13 11 10 40 40 H 1.09005 * 109.46842 * 299.99987 * 13 11 10 41 41 H 1.08996 * 109.47252 * 60.00472 * 16 14 11 42 42 H 1.09005 * 109.47129 * 180.02562 * 16 14 11 43 43 H 1.09002 * 109.47110 * 300.00171 * 16 14 11 44 44 H 1.00909 * 110.99726 * 328.94938 * 17 14 11 45 45 H 1.08995 * 109.46837 * 299.99672 * 18 17 14 46 46 H 1.09000 * 109.46762 * 59.99276 * 18 17 14 47 47 H 0.96999 * 120.00078 * 0.02562 * 21 19 18 48 48 H 0.97001 * 119.99825 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1912 2.1052 1.0467 5 6 2.6372 3.2927 0.7252 6 6 2.7592 3.3426 -0.6652 7 6 2.3598 2.0955 -1.1132 8 6 2.3084 1.6331 -2.5094 9 8 1.8410 0.5414 -2.7717 10 7 2.7793 2.4196 -3.4974 11 6 2.6262 2.0100 -4.8957 12 1 2.7163 0.9263 -4.9688 13 6 1.2504 2.4430 -5.4061 14 6 3.7156 2.6706 -5.7428 15 1 4.6917 2.2941 -5.4374 16 6 3.6682 4.1868 -5.5425 17 7 3.4913 2.3568 -7.1603 18 6 4.7456 2.4331 -7.9212 19 6 4.4766 2.1052 -9.3673 20 8 3.3506 1.8350 -9.7286 21 7 5.4868 2.1132 -10.2593 22 6 5.2421 1.8143 -11.5748 23 1 4.2398 1.5729 -11.8963 24 6 6.2838 1.8220 -12.4944 25 7 7.5036 2.1152 -12.1029 26 14 5.9504 1.4155 -14.2868 27 1 4.9749 2.3881 -14.8417 28 1 7.2182 1.4932 -15.0562 29 1 5.3929 0.0429 -14.3877 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.8663 4.0936 1.4128 36 1 3.0961 4.1763 -1.2635 37 1 3.2197 3.2568 -3.2827 38 1 1.1602 3.5268 -5.3330 39 1 1.1363 2.1379 -6.4463 40 1 0.4743 1.9724 -4.8025 41 1 3.8347 4.4197 -4.4908 42 1 4.4441 4.6574 -6.1464 43 1 2.6920 4.5633 -5.8480 44 1 3.0587 1.4514 -7.2661 45 1 5.1549 3.4406 -7.8468 46 1 5.4615 1.7191 -7.5141 47 1 6.3872 2.3296 -9.9704 48 1 8.2309 2.1202 -12.7448 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275388397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:51 Heat of formation + Delta-G solvation = -18.464234 kcal Electronic energy + Delta-G solvation = -28779.811505 eV Core-core repulsion = 24677.538375 eV Total energy + Delta-G solvation = -4102.273131 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.53951 -40.92611 -40.12386 -38.51582 -36.10957 -35.72281 -35.12542 -33.28712 -32.79434 -31.22397 -30.74331 -30.00491 -28.12563 -26.18352 -25.64018 -24.81380 -23.74892 -22.40747 -21.13564 -21.07024 -20.63548 -19.91739 -19.17819 -17.78208 -17.44889 -17.27017 -16.89885 -16.69570 -16.42429 -16.09841 -15.94360 -15.64864 -15.56484 -15.30785 -15.13710 -14.76644 -14.47667 -14.24125 -14.01250 -13.70011 -13.52967 -13.51353 -13.40685 -13.09194 -13.05684 -13.03195 -12.82840 -12.52769 -12.41933 -12.31073 -12.12087 -11.92546 -11.82280 -11.67066 -11.48840 -11.19200 -10.43477 -10.32163 -10.10594 -10.00403 -10.00228 -9.36353 -8.45675 -5.94118 0.20222 1.33554 1.40455 1.42452 1.53115 1.65407 2.05470 2.07737 2.12763 2.30662 2.96221 3.21792 3.45374 3.54776 3.56319 3.65588 3.94796 3.98461 4.07993 4.18983 4.19374 4.28144 4.32362 4.46502 4.48046 4.58485 4.60742 4.66572 4.66692 4.78218 4.82557 4.86163 4.87553 4.97663 5.06507 5.07650 5.28424 5.39032 5.41909 5.53289 5.56532 5.74248 5.89126 6.09857 6.34663 6.35969 6.61348 6.99521 7.09782 7.13841 7.57880 8.13258 8.71387 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027977 B = 0.001806 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.588972 B =15502.446049 C =15886.482562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.106 3.894 3 N -0.265 5.265 4 N -0.301 5.301 5 C -0.007 4.007 6 C -0.176 4.176 7 C -0.062 4.062 8 C 0.591 3.409 9 O -0.570 6.570 10 N -0.690 5.690 11 C 0.152 3.848 12 H 0.073 0.927 13 C -0.151 4.151 14 C 0.081 3.919 15 H 0.060 0.940 16 C -0.144 4.144 17 N -0.667 5.667 18 C 0.066 3.934 19 C 0.438 3.562 20 O -0.622 6.622 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.079 0.921 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.273 1.273 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.217 0.783 36 H 0.193 0.807 37 H 0.417 0.583 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.344 0.656 45 H 0.108 0.892 46 H 0.065 0.935 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.084 3.894 27.032 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.013 4.013 3 N -0.053 5.053 4 N -0.134 5.134 5 C -0.182 4.182 6 C -0.205 4.205 7 C -0.190 4.190 8 C 0.377 3.623 9 O -0.450 6.450 10 N -0.344 5.344 11 C 0.047 3.953 12 H 0.091 0.909 13 C -0.209 4.209 14 C -0.028 4.028 15 H 0.077 0.923 16 C -0.202 4.202 17 N -0.301 5.301 18 C -0.066 4.066 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.198 1.198 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.234 0.766 36 H 0.210 0.790 37 H 0.257 0.743 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.163 0.837 45 H 0.126 0.874 46 H 0.083 0.917 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.532 2.784 27.230 28.389 hybrid contribution 1.184 -0.232 -1.262 1.746 sum -6.348 2.551 25.968 26.854 Atomic orbital electron populations 1.22004 0.92844 1.04449 1.01929 1.22291 0.96782 0.76262 1.05959 1.46042 1.44528 1.12845 1.01931 1.73195 1.19527 1.06312 1.14347 1.24205 1.03027 0.95134 0.95846 1.22712 1.05348 0.96464 0.95948 1.21512 1.12639 0.95445 0.89391 1.17105 0.77597 0.83890 0.83717 1.90781 1.47694 1.22099 1.84414 1.45619 1.59298 1.24724 1.04792 1.20910 0.95826 0.99163 0.79393 0.90933 1.22049 0.95057 1.02481 1.01302 1.21763 0.96718 0.97914 0.86452 0.92251 1.21922 1.03205 0.92981 1.02090 1.60237 1.23657 1.37776 1.08398 1.21586 0.92209 1.03308 0.89530 1.20887 0.84893 0.82719 0.88982 1.90500 1.23902 1.55127 1.81347 1.41924 1.09984 1.61475 1.07698 1.19622 0.95914 1.45852 0.84928 0.90341 1.26028 0.94386 0.96707 1.04203 1.69664 1.00263 1.48755 1.37383 0.85002 0.77741 0.78805 0.76873 1.19741 1.19523 1.19791 0.91863 0.93613 0.88241 0.87634 0.87016 0.76634 0.78958 0.74339 0.90782 0.91497 0.93752 0.89840 0.92284 0.91771 0.83711 0.87382 0.91683 0.76957 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 10.24 71.98 0.74 -1.57 16 2 C 0.11 1.78 6.59 86.38 0.57 2.35 16 3 N -0.26 -5.19 3.35 -334.69 -1.12 -6.31 16 4 N -0.30 -5.75 11.90 -57.14 -0.68 -6.43 16 5 C -0.01 -0.10 12.03 85.18 1.02 0.93 16 6 C -0.18 -2.22 10.50 22.65 0.24 -1.99 16 7 C -0.06 -1.15 6.96 40.79 0.28 -0.87 16 8 C 0.59 12.39 7.75 86.59 0.67 13.06 16 9 O -0.57 -15.59 14.30 -4.11 -0.06 -15.64 16 10 N -0.69 -11.11 4.97 -446.07 -2.22 -13.33 16 11 C 0.15 3.06 2.35 44.99 0.11 3.16 16 12 H 0.07 1.77 7.51 -2.39 -0.02 1.75 16 13 C -0.15 -3.27 9.01 71.98 0.65 -2.62 16 14 C 0.08 1.62 2.66 44.91 0.12 1.74 16 15 H 0.06 1.11 7.80 -2.39 -0.02 1.09 16 16 C -0.14 -2.28 8.93 71.98 0.64 -1.64 16 17 N -0.67 -19.13 5.14 -495.58 -2.55 -21.67 16 18 C 0.07 2.12 5.97 85.55 0.51 2.63 16 19 C 0.44 20.29 7.82 87.66 0.69 20.97 16 20 O -0.62 -33.87 15.78 -3.09 -0.05 -33.92 16 21 N -0.57 -28.96 5.29 -306.98 -1.62 -30.58 16 22 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 23 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 25 N -0.92 -49.23 13.05 21.67 0.28 -48.94 16 26 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 28 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 29 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.11 2.02 6.19 -2.39 -0.01 2.01 16 34 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.22 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.19 0.95 7.63 -2.91 -0.02 0.93 16 37 H 0.42 4.18 5.66 -92.71 -0.52 3.65 16 38 H 0.07 1.42 6.56 -2.39 -0.02 1.40 16 39 H 0.07 1.71 7.17 -2.39 -0.02 1.69 16 40 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.08 0.74 6.29 -2.39 -0.02 0.72 16 42 H 0.06 1.02 7.45 -2.38 -0.02 1.00 16 43 H 0.06 1.14 6.57 -2.39 -0.02 1.12 16 44 H 0.34 10.81 7.61 -89.69 -0.68 10.13 16 45 H 0.11 3.06 7.43 -2.39 -0.02 3.04 16 46 H 0.07 1.84 8.05 -2.39 -0.02 1.83 16 47 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 48 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -73.89 394.67 0.61 -73.28 By element: Atomic # 1 Polarization: 41.78 SS G_CDS: -0.92 Total: 40.85 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 7.52 Total: 17.90 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -7.90 Total: -127.27 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.11 Total: -49.57 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.89 0.61 -73.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275388397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.814 kcal (2) G-P(sol) polarization free energy of solvation -73.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds