Wall clock time and date at job start Tue Mar 31 2020 20:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47105 * 2 1 4 4 N 1.28437 * 125.19193 * 272.33781 * 3 2 1 5 5 C 1.30869 * 110.92687 * 179.97438 * 4 3 2 6 6 C 1.39670 * 107.86216 * 359.77577 * 5 4 3 7 7 C 1.36606 * 125.18561 * 92.32042 * 3 2 1 8 8 C 1.47155 * 126.88716 * 359.97438 * 7 3 2 9 9 O 1.21637 * 120.00028 * 5.33794 * 8 7 3 10 10 N 1.34776 * 120.00275 * 185.33881 * 8 7 3 11 11 C 1.46504 * 120.00184 * 174.56306 * 10 8 7 12 12 H 1.08995 * 109.47073 * 34.99522 * 11 10 8 13 13 C 1.53001 * 109.46555 * 274.99689 * 11 10 8 14 14 C 1.52997 * 109.47275 * 155.00244 * 11 10 8 15 15 H 1.08995 * 109.47373 * 59.99170 * 14 11 10 16 16 C 1.53002 * 109.46799 * 299.99803 * 14 11 10 17 17 N 1.46893 * 109.47323 * 179.97438 * 14 11 10 18 18 C 1.46897 * 111.00309 * 204.99583 * 17 14 11 19 19 C 1.50702 * 109.47361 * 179.97438 * 18 17 14 20 20 O 1.21292 * 120.00079 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99971 * 179.97438 * 19 18 17 22 22 C 1.37091 * 119.99765 * 180.02562 * 21 19 18 23 23 H 1.07997 * 120.00401 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99736 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00394 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99713 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47421 * 90.00003 * 26 24 22 28 28 H 1.48503 * 109.46951 * 209.99779 * 26 24 22 29 29 H 1.48500 * 109.47157 * 329.99544 * 26 24 22 30 30 H 1.09004 * 109.47244 * 299.99811 * 1 2 3 31 31 H 1.08997 * 109.47586 * 59.99486 * 1 2 3 32 32 H 1.09004 * 109.47510 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46724 * 240.00112 * 2 1 3 34 34 H 1.09001 * 109.46880 * 120.00392 * 2 1 3 35 35 H 1.08005 * 126.06908 * 180.02562 * 5 4 3 36 36 H 1.07998 * 127.32454 * 180.27199 * 6 5 4 37 37 H 0.97000 * 119.99777 * 354.55944 * 10 8 7 38 38 H 1.08995 * 109.47762 * 299.99951 * 13 11 10 39 39 H 1.09001 * 109.46657 * 179.97438 * 13 11 10 40 40 H 1.09006 * 109.47293 * 60.00431 * 13 11 10 41 41 H 1.09005 * 109.47351 * 300.00067 * 16 14 11 42 42 H 1.08998 * 109.47397 * 59.99727 * 16 14 11 43 43 H 1.09003 * 109.47469 * 180.02562 * 16 14 11 44 44 H 1.00896 * 110.99909 * 328.95066 * 17 14 11 45 45 H 1.09000 * 109.46965 * 300.00084 * 18 17 14 46 46 H 1.09003 * 109.47282 * 59.99825 * 18 17 14 47 47 H 0.97003 * 119.99714 * 0.02562 * 21 19 18 48 48 H 0.97000 * 120.00253 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2247 2.0933 -1.0488 5 6 2.6593 3.2849 -0.7265 6 6 2.7369 3.3505 0.6665 7 6 2.3233 2.1083 1.1156 8 6 2.2253 1.6625 2.5145 9 8 1.9318 0.5092 2.7662 10 7 2.4606 2.5321 3.5170 11 6 2.2476 2.1223 4.9073 12 1 2.5126 1.0712 5.0210 13 6 0.7763 2.3202 5.2775 14 6 3.1241 2.9720 5.8295 15 1 2.8591 4.0231 5.7158 16 6 4.5954 2.7742 5.4592 17 7 2.9101 2.5616 7.2236 18 6 3.2253 3.6576 8.1494 19 6 2.9937 3.2004 9.5666 20 8 2.6048 2.0723 9.7841 21 7 3.2197 4.0448 10.5926 22 6 3.0095 3.6287 11.8818 23 1 2.6624 2.6245 12.0753 24 6 3.2420 4.4993 12.9394 25 7 3.6637 5.7214 12.7040 26 14 2.9549 3.9326 14.6961 27 1 4.2047 3.3389 15.2353 28 1 2.5577 5.0938 15.5322 29 1 1.8739 2.9145 14.7174 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.9095 4.0783 -1.4153 36 1 3.0537 4.1911 1.2659 37 1 2.7710 3.4292 3.3179 38 1 0.5111 3.3713 5.1638 39 1 0.6177 2.0149 6.3118 40 1 0.1517 1.7148 4.6205 41 1 4.8606 1.7230 5.5729 42 1 4.7540 3.0790 4.4248 43 1 5.2201 3.3792 6.1165 44 1 1.9670 2.2309 7.3624 45 1 4.2687 3.9480 8.0269 46 1 2.5828 4.5114 7.9339 47 1 3.5310 4.9469 10.4187 48 1 3.8264 6.3291 13.4424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275388398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:55 Heat of formation + Delta-G solvation = 5.144188 kcal Electronic energy + Delta-G solvation = -28787.653443 eV Core-core repulsion = 24686.404050 eV Total energy + Delta-G solvation = -4101.249393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.88371 -40.02594 -38.47154 -37.30984 -35.10608 -34.38650 -33.82179 -31.91706 -31.23266 -30.23074 -30.11265 -29.82460 -26.44252 -24.84302 -24.29408 -23.90427 -22.74062 -21.62129 -20.70908 -20.04165 -19.32537 -18.34408 -17.90722 -16.77892 -16.56313 -16.23805 -15.85712 -15.46197 -15.26914 -14.99928 -14.64023 -14.52179 -14.23242 -14.10936 -13.93497 -13.72088 -13.60747 -13.35486 -13.07350 -12.94861 -12.53524 -12.45330 -12.41797 -11.95800 -11.78636 -11.67066 -11.62964 -11.48549 -11.36525 -11.16470 -11.05967 -10.68602 -10.40508 -10.33390 -10.23061 -9.64034 -9.52504 -9.43610 -9.32149 -8.48546 -8.13990 -7.97897 -6.43305 -3.84060 0.91259 1.99314 2.27116 2.81540 2.89150 3.17053 3.25856 3.31674 3.88524 4.06529 4.14247 4.20720 4.30229 4.52693 4.57687 4.64353 4.76741 4.79487 4.89448 5.04994 5.10807 5.17180 5.22914 5.23262 5.30488 5.33532 5.40933 5.46761 5.56483 5.64230 5.66337 5.74473 5.80552 5.90595 5.93724 6.05949 6.08842 6.16138 6.22206 6.32122 6.37556 7.06337 7.15496 7.53931 7.59109 7.68924 7.81107 8.04614 8.59400 9.16354 9.52375 10.03698 10.74357 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031025 B = 0.001802 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.277483 B =15536.714333 C =16041.568232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.252 5.252 4 N -0.278 5.278 5 C -0.005 4.005 6 C -0.190 4.190 7 C -0.037 4.037 8 C 0.593 3.407 9 O -0.536 6.536 10 N -0.704 5.704 11 C 0.142 3.858 12 H 0.104 0.896 13 C -0.171 4.171 14 C 0.078 3.922 15 H 0.048 0.952 16 C -0.141 4.141 17 N -0.660 5.660 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.186 0.814 36 H 0.160 0.840 37 H 0.402 0.598 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.352 0.648 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 -1.746 -26.655 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.041 5.041 4 N -0.111 5.111 5 C -0.180 4.180 6 C -0.219 4.219 7 C -0.166 4.166 8 C 0.379 3.621 9 O -0.413 6.413 10 N -0.356 5.356 11 C 0.038 3.962 12 H 0.122 0.878 13 C -0.229 4.229 14 C -0.033 4.033 15 H 0.066 0.934 16 C -0.199 4.199 17 N -0.296 5.296 18 C -0.081 4.081 19 C 0.225 3.775 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.203 0.797 36 H 0.178 0.822 37 H 0.238 0.762 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.174 0.826 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.690 -4.317 -27.005 27.480 hybrid contribution -0.247 2.112 1.210 2.447 sum -2.936 -2.205 -25.795 26.055 Atomic orbital electron populations 1.22081 0.93400 1.03651 1.02999 1.22279 0.96261 0.76476 1.06182 1.45886 1.44154 1.12398 1.01633 1.73216 1.18314 1.05640 1.13885 1.23581 1.04379 0.95050 0.94988 1.22268 1.07205 0.96706 0.95738 1.21426 1.11335 0.94018 0.89818 1.16871 0.77098 0.85168 0.83003 1.90794 1.48489 1.17589 1.84433 1.45657 1.67945 1.16127 1.05836 1.21156 0.94924 1.01380 0.78771 0.87805 1.22276 0.95651 1.02220 1.02777 1.21729 0.95936 0.96726 0.88894 0.93432 1.21819 0.94895 1.03182 0.99965 1.60171 1.33720 1.35088 1.00636 1.21727 1.01778 0.92137 0.92478 1.19784 0.84997 0.86791 0.85886 1.90531 1.51187 1.20009 1.84927 1.41857 1.58658 1.13971 1.05495 1.19704 1.42021 0.99945 0.81202 0.87896 1.25266 0.97141 0.95149 1.00408 1.69608 1.45916 1.05598 1.33178 0.85854 0.78852 0.78065 0.81499 1.20382 1.20948 1.19420 0.91740 0.91856 0.89931 0.88400 0.86088 0.79667 0.82207 0.76242 0.92294 0.90495 0.91779 0.91670 0.92902 0.92167 0.82569 0.89478 0.93781 0.77468 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.24 37.16 0.38 -0.80 16 2 C 0.11 0.88 6.64 -4.04 -0.03 0.85 16 3 N -0.25 -2.53 3.35 -57.14 -0.19 -2.72 16 4 N -0.28 -2.82 11.90 30.59 0.36 -2.46 16 5 C 0.00 -0.04 12.03 -17.43 -0.21 -0.25 16 6 C -0.19 -1.45 10.50 -38.98 -0.41 -1.86 16 7 C -0.04 -0.36 6.96 -82.06 -0.57 -0.93 16 8 C 0.59 6.30 7.76 -12.64 -0.10 6.20 16 9 O -0.54 -7.10 14.25 5.25 0.07 -7.03 16 10 N -0.70 -6.11 4.37 -54.97 -0.24 -6.35 16 11 C 0.14 1.49 2.34 -67.93 -0.16 1.33 16 12 H 0.10 1.33 7.50 -51.93 -0.39 0.94 16 13 C -0.17 -1.76 9.25 37.16 0.34 -1.42 16 14 C 0.08 0.86 2.28 -67.72 -0.15 0.71 16 15 H 0.05 0.47 7.80 -51.93 -0.40 0.07 16 16 C -0.14 -1.50 9.26 37.16 0.34 -1.15 16 17 N -0.66 -10.03 5.93 -108.00 -0.64 -10.67 16 18 C 0.05 0.86 5.97 -4.98 -0.03 0.83 16 19 C 0.44 10.17 7.82 -10.98 -0.09 10.08 16 20 O -0.58 -15.60 15.78 5.55 0.09 -15.52 16 21 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 22 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 26 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.12 1.10 6.09 -51.93 -0.32 0.78 16 35 H 0.19 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.16 0.73 7.58 -52.49 -0.40 0.33 16 37 H 0.40 2.51 7.42 -40.82 -0.30 2.21 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.86 6.21 -51.93 -0.32 0.54 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.44 7.45 -51.93 -0.39 0.06 16 43 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 44 H 0.35 5.54 5.86 -39.29 -0.23 5.31 16 45 H 0.09 1.35 7.44 -51.93 -0.39 0.97 16 46 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 47 H 0.39 9.31 7.90 -40.82 -0.32 8.98 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 398.28 15.07 6.00 6.00 Total: -1.00 -33.61 398.28 -6.98 -40.59 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -7.16 Total: 14.23 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.92 Total: 5.67 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.04 Total: -59.84 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.16 Total: -22.54 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.61 -6.98 -40.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275388398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.730 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds