Wall clock time and date at job start Tue Mar 31 2020 20:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47105 * 2 1 4 4 N 1.28437 * 125.19193 * 272.33781 * 3 2 1 5 5 C 1.30869 * 110.92687 * 179.97438 * 4 3 2 6 6 C 1.39670 * 107.86216 * 359.77577 * 5 4 3 7 7 C 1.36606 * 125.18561 * 92.32042 * 3 2 1 8 8 C 1.47155 * 126.88716 * 359.97438 * 7 3 2 9 9 O 1.21637 * 120.00028 * 5.33794 * 8 7 3 10 10 N 1.34776 * 120.00275 * 185.33881 * 8 7 3 11 11 C 1.46504 * 120.00184 * 174.56306 * 10 8 7 12 12 H 1.08995 * 109.47073 * 34.99522 * 11 10 8 13 13 C 1.53001 * 109.46555 * 274.99689 * 11 10 8 14 14 C 1.52997 * 109.47275 * 155.00244 * 11 10 8 15 15 H 1.08995 * 109.47373 * 59.99170 * 14 11 10 16 16 C 1.53002 * 109.46799 * 299.99803 * 14 11 10 17 17 N 1.46893 * 109.47323 * 179.97438 * 14 11 10 18 18 C 1.46897 * 111.00309 * 204.99583 * 17 14 11 19 19 C 1.50702 * 109.47361 * 179.97438 * 18 17 14 20 20 O 1.21292 * 120.00079 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99971 * 179.97438 * 19 18 17 22 22 C 1.37091 * 119.99765 * 180.02562 * 21 19 18 23 23 H 1.07997 * 120.00401 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99736 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00394 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99713 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47421 * 90.00003 * 26 24 22 28 28 H 1.48503 * 109.46951 * 209.99779 * 26 24 22 29 29 H 1.48500 * 109.47157 * 329.99544 * 26 24 22 30 30 H 1.09004 * 109.47244 * 299.99811 * 1 2 3 31 31 H 1.08997 * 109.47586 * 59.99486 * 1 2 3 32 32 H 1.09004 * 109.47510 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46724 * 240.00112 * 2 1 3 34 34 H 1.09001 * 109.46880 * 120.00392 * 2 1 3 35 35 H 1.08005 * 126.06908 * 180.02562 * 5 4 3 36 36 H 1.07998 * 127.32454 * 180.27199 * 6 5 4 37 37 H 0.97000 * 119.99777 * 354.55944 * 10 8 7 38 38 H 1.08995 * 109.47762 * 299.99951 * 13 11 10 39 39 H 1.09001 * 109.46657 * 179.97438 * 13 11 10 40 40 H 1.09006 * 109.47293 * 60.00431 * 13 11 10 41 41 H 1.09005 * 109.47351 * 300.00067 * 16 14 11 42 42 H 1.08998 * 109.47397 * 59.99727 * 16 14 11 43 43 H 1.09003 * 109.47469 * 180.02562 * 16 14 11 44 44 H 1.00896 * 110.99909 * 328.95066 * 17 14 11 45 45 H 1.09000 * 109.46965 * 300.00084 * 18 17 14 46 46 H 1.09003 * 109.47282 * 59.99825 * 18 17 14 47 47 H 0.97003 * 119.99714 * 0.02562 * 21 19 18 48 48 H 0.97000 * 120.00253 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2247 2.0933 -1.0488 5 6 2.6593 3.2849 -0.7265 6 6 2.7369 3.3505 0.6665 7 6 2.3233 2.1083 1.1156 8 6 2.2253 1.6625 2.5145 9 8 1.9318 0.5092 2.7662 10 7 2.4606 2.5321 3.5170 11 6 2.2476 2.1223 4.9073 12 1 2.5126 1.0712 5.0210 13 6 0.7763 2.3202 5.2775 14 6 3.1241 2.9720 5.8295 15 1 2.8591 4.0231 5.7158 16 6 4.5954 2.7742 5.4592 17 7 2.9101 2.5616 7.2236 18 6 3.2253 3.6576 8.1494 19 6 2.9937 3.2004 9.5666 20 8 2.6048 2.0723 9.7841 21 7 3.2197 4.0448 10.5926 22 6 3.0095 3.6287 11.8818 23 1 2.6624 2.6245 12.0753 24 6 3.2420 4.4993 12.9394 25 7 3.6637 5.7214 12.7040 26 14 2.9549 3.9326 14.6961 27 1 4.2047 3.3389 15.2353 28 1 2.5577 5.0938 15.5322 29 1 1.8739 2.9145 14.7174 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.9095 4.0783 -1.4153 36 1 3.0537 4.1911 1.2659 37 1 2.7710 3.4292 3.3179 38 1 0.5111 3.3713 5.1638 39 1 0.6177 2.0149 6.3118 40 1 0.1517 1.7148 4.6205 41 1 4.8606 1.7230 5.5729 42 1 4.7540 3.0790 4.4248 43 1 5.2201 3.3792 6.1165 44 1 1.9670 2.2309 7.3624 45 1 4.2687 3.9480 8.0269 46 1 2.5828 4.5114 7.9339 47 1 3.5310 4.9469 10.4187 48 1 3.8264 6.3291 13.4424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275388398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:54 Heat of formation + Delta-G solvation = -20.452417 kcal Electronic energy + Delta-G solvation = -28788.763395 eV Core-core repulsion = 24686.404050 eV Total energy + Delta-G solvation = -4102.359345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.53028 -40.89913 -40.12773 -38.46741 -36.10078 -35.72864 -35.11862 -33.28268 -32.72803 -31.17666 -30.75281 -30.64101 -28.02215 -25.90753 -25.55694 -24.69556 -23.55200 -22.35601 -21.57950 -21.08081 -20.80405 -19.91503 -19.09640 -17.81744 -17.57351 -17.27927 -16.95897 -16.58896 -16.39561 -16.04967 -15.86413 -15.66138 -15.42909 -15.31347 -14.87313 -14.75452 -14.66215 -14.19418 -14.12195 -13.98265 -13.55660 -13.51629 -13.46699 -13.13722 -13.03419 -12.89616 -12.67655 -12.61782 -12.40551 -12.36987 -12.26812 -12.11597 -11.82200 -11.61826 -11.49605 -11.17162 -10.41892 -10.32659 -10.11264 -10.00131 -9.99597 -9.33643 -8.45714 -5.93955 0.21286 1.33520 1.38613 1.42692 1.54952 1.66392 2.05196 2.07538 2.14481 2.30797 2.97480 3.21901 3.47037 3.52816 3.57402 3.63103 3.94549 3.98187 4.08189 4.17610 4.19795 4.29060 4.32735 4.43220 4.48367 4.54364 4.60832 4.62277 4.67016 4.71741 4.81854 4.86218 4.88538 4.95671 5.01645 5.06485 5.19469 5.32061 5.41261 5.42881 5.57191 5.74886 5.90905 6.11723 6.36064 6.40339 6.61736 7.01231 7.10773 7.14220 7.58075 8.13708 8.71506 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031025 B = 0.001802 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.277483 B =15536.714333 C =16041.568232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.104 3.896 3 N -0.265 5.265 4 N -0.302 5.302 5 C -0.008 4.008 6 C -0.175 4.175 7 C -0.061 4.061 8 C 0.593 3.407 9 O -0.570 6.570 10 N -0.688 5.688 11 C 0.152 3.848 12 H 0.076 0.924 13 C -0.166 4.166 14 C 0.084 3.916 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.679 5.679 18 C 0.067 3.933 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.333 4.333 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.216 0.784 36 H 0.194 0.806 37 H 0.418 0.582 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.346 0.654 45 H 0.106 0.894 46 H 0.073 0.927 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.038 0.331 -27.808 27.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.015 4.015 3 N -0.053 5.053 4 N -0.134 5.134 5 C -0.183 4.183 6 C -0.204 4.204 7 C -0.189 4.189 8 C 0.379 3.621 9 O -0.450 6.450 10 N -0.341 5.341 11 C 0.047 3.953 12 H 0.094 0.906 13 C -0.224 4.224 14 C -0.026 4.026 15 H 0.093 0.907 16 C -0.197 4.197 17 N -0.315 5.315 18 C -0.065 4.065 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.463 4.463 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.233 0.767 36 H 0.211 0.789 37 H 0.256 0.744 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.168 0.832 45 H 0.124 0.876 46 H 0.091 0.909 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.199 -2.189 -28.184 28.355 hybrid contribution -0.378 1.461 1.481 2.115 sum -2.576 -0.728 -26.703 26.837 Atomic orbital electron populations 1.22016 0.92844 1.04484 1.01934 1.22323 0.96720 0.76337 1.06147 1.46037 1.44737 1.12825 1.01737 1.73200 1.19188 1.06727 1.14335 1.24201 1.03261 0.94962 0.95869 1.22717 1.05286 0.96505 0.95896 1.21501 1.12962 0.95169 0.89272 1.17058 0.76520 0.84811 0.83695 1.90782 1.50091 1.19134 1.84955 1.45421 1.67389 1.16586 1.04660 1.20879 0.94917 0.99876 0.79643 0.90562 1.22214 0.95349 1.03065 1.01793 1.21759 0.96305 0.98044 0.86491 0.90707 1.21824 0.94328 1.01891 1.01634 1.60152 1.33626 1.35149 1.02589 1.21582 1.03490 0.93102 0.88344 1.20929 0.82781 0.85852 0.88035 1.90502 1.52558 1.21913 1.86140 1.41918 1.59327 1.14479 1.05265 1.19644 1.44007 0.99480 0.83147 0.90445 1.26008 0.96369 0.95151 1.03713 1.69660 1.45758 1.06088 1.34453 0.84954 0.78646 0.77875 0.77023 1.19776 1.19499 1.19873 0.93601 0.91857 0.88220 0.87026 0.87446 0.76706 0.78885 0.74372 0.90566 0.91650 0.92640 0.93774 0.90201 0.92288 0.83165 0.87609 0.90925 0.76878 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.24 71.98 0.74 -1.52 16 2 C 0.10 1.73 6.64 86.38 0.57 2.30 16 3 N -0.26 -5.15 3.35 -334.69 -1.12 -6.27 16 4 N -0.30 -5.74 11.90 -57.14 -0.68 -6.42 16 5 C -0.01 -0.11 12.03 85.18 1.02 0.92 16 6 C -0.18 -2.16 10.50 22.66 0.24 -1.92 16 7 C -0.06 -1.11 6.96 40.78 0.28 -0.83 16 8 C 0.59 12.21 7.76 86.58 0.67 12.88 16 9 O -0.57 -15.56 14.25 -4.15 -0.06 -15.62 16 10 N -0.69 -10.67 4.37 -446.06 -1.95 -12.62 16 11 C 0.15 3.04 2.34 44.99 0.11 3.14 16 12 H 0.08 2.00 7.50 -2.39 -0.02 1.98 16 13 C -0.17 -3.30 9.25 71.98 0.67 -2.63 16 14 C 0.08 1.67 2.28 44.92 0.10 1.77 16 15 H 0.08 1.16 7.80 -2.39 -0.02 1.14 16 16 C -0.14 -2.65 9.26 71.98 0.67 -1.98 16 17 N -0.68 -19.94 5.93 -495.60 -2.94 -22.88 16 18 C 0.07 2.13 5.97 85.56 0.51 2.64 16 19 C 0.44 20.24 7.82 87.66 0.69 20.92 16 20 O -0.62 -34.30 15.78 -3.07 -0.05 -34.35 16 21 N -0.57 -28.76 5.29 -306.98 -1.62 -30.39 16 22 C -0.33 -18.76 9.68 84.04 0.81 -17.94 16 23 H 0.08 4.68 7.16 -2.91 -0.02 4.65 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 25 N -0.92 -48.83 13.05 21.66 0.28 -48.54 16 26 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 29 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 30 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.11 2.08 6.09 -2.39 -0.01 2.06 16 35 H 0.22 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.19 0.87 7.58 -2.91 -0.02 0.85 16 37 H 0.42 3.76 7.42 -92.71 -0.69 3.07 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 1.47 6.21 -2.39 -0.01 1.45 16 40 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.08 1.08 7.45 -2.39 -0.02 1.06 16 43 H 0.06 1.15 7.45 -2.39 -0.02 1.14 16 44 H 0.35 10.84 5.86 -89.70 -0.53 10.31 16 45 H 0.11 3.01 7.44 -2.39 -0.02 2.99 16 46 H 0.07 1.93 8.06 -2.39 -0.02 1.91 16 47 H 0.40 18.77 7.90 -92.71 -0.73 18.03 16 48 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -74.94 398.28 0.50 -74.44 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: -0.94 Total: 40.37 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 7.54 Total: 17.56 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -8.03 Total: -127.11 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -0.11 Total: -49.97 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -74.94 0.50 -74.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275388398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.987 kcal (2) G-P(sol) polarization free energy of solvation -74.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds