Wall clock time and date at job start Tue Mar 31 2020 20:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.46861 * 2 1 4 4 C 1.35035 * 124.88543 * 125.00493 * 3 2 1 5 5 C 1.35363 * 107.23085 * 180.20197 * 4 3 2 6 6 C 1.41504 * 105.50318 * 359.63089 * 5 4 3 7 7 C 1.47710 * 126.51983 * 180.17541 * 6 5 4 8 8 O 1.21568 * 120.00124 * 0.25119 * 7 6 5 9 9 N 1.34775 * 119.99902 * 180.26234 * 7 6 5 10 10 C 1.46497 * 120.00110 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47222 * 34.59917 * 10 9 7 12 12 C 1.53004 * 109.46974 * 274.60207 * 10 9 7 13 13 C 1.52997 * 109.47582 * 154.59975 * 10 9 7 14 14 N 1.46901 * 109.47085 * 305.18415 * 13 10 9 15 15 C 1.46899 * 110.99979 * 163.93378 * 14 13 10 16 16 C 1.46903 * 110.99827 * 287.88643 * 14 13 10 17 17 C 1.50701 * 109.46861 * 169.99969 * 16 14 13 18 18 O 1.21292 * 120.00155 * 0.02562 * 17 16 14 19 19 N 1.34772 * 119.99551 * 180.02562 * 17 16 14 20 20 C 1.37104 * 119.99982 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99473 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00390 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99918 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00287 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46982 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.47159 * 119.99945 * 24 22 20 27 27 H 1.48494 * 109.47338 * 240.00330 * 24 22 20 28 28 N 1.28471 * 124.88500 * 304.95272 * 3 2 1 29 29 H 1.09001 * 109.47426 * 300.00255 * 1 2 3 30 30 H 1.09004 * 109.47273 * 60.00271 * 1 2 3 31 31 H 1.09001 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46544 * 239.99611 * 2 1 3 33 33 H 1.08999 * 109.46413 * 119.99904 * 2 1 3 34 34 H 1.08003 * 126.38171 * 359.93527 * 4 3 2 35 35 H 1.07997 * 127.24747 * 179.75574 * 5 4 3 36 36 H 0.96998 * 120.00140 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47607 * 179.97438 * 12 10 9 38 38 H 1.08999 * 109.46909 * 299.99902 * 12 10 9 39 39 H 1.08998 * 109.47533 * 59.99141 * 12 10 9 40 40 H 1.09001 * 109.47086 * 65.17915 * 13 10 9 41 41 H 1.08997 * 109.47157 * 185.18047 * 13 10 9 42 42 H 1.09001 * 109.46924 * 54.89347 * 15 14 13 43 43 H 1.08999 * 109.46974 * 174.89242 * 15 14 13 44 44 H 1.08994 * 109.47179 * 294.89431 * 15 14 13 45 45 H 1.08998 * 109.47151 * 290.00482 * 16 14 13 46 46 H 1.09007 * 109.46796 * 50.00015 * 16 14 13 47 47 H 0.97001 * 120.00261 * 359.97438 * 19 17 16 48 48 H 0.96999 * 120.00311 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8748 1.8976 0.9073 5 6 3.0792 3.1934 0.5737 6 6 2.3014 3.4120 -0.5881 7 6 2.1880 4.6753 -1.3451 8 8 2.8051 5.6583 -0.9833 9 7 1.4002 4.7383 -2.4368 10 6 1.2882 5.9910 -3.1880 11 1 2.2446 6.5135 -3.1679 12 6 0.2119 6.8728 -2.5515 13 6 0.9050 5.6843 -4.6371 14 7 1.8722 4.7385 -5.2097 15 6 1.3479 4.1290 -6.4392 16 6 3.1648 5.3918 -5.4558 17 6 4.1954 4.3498 -5.8070 18 8 3.8836 3.1784 -5.8488 19 7 5.4634 4.7197 -6.0748 20 6 6.4011 3.7718 -6.3938 21 1 6.1235 2.7288 -6.4310 22 6 7.7083 4.1531 -6.6704 23 7 8.0459 5.4223 -6.6256 24 14 8.9861 2.8615 -7.1044 25 1 8.3566 1.5167 -7.0861 26 1 9.5267 3.1360 -8.4599 27 1 10.0906 2.9051 -6.1128 28 7 1.6940 2.2752 -0.8638 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3116 1.3753 1.7457 35 1 3.7057 3.9091 1.0851 36 1 0.9080 3.9540 -2.7256 37 1 0.1288 7.8051 -3.1101 38 1 -0.7445 6.3503 -2.5716 39 1 0.4848 7.0913 -1.5191 40 1 -0.0922 5.2450 -4.6640 41 1 0.9114 6.6068 -5.2177 42 1 1.0601 4.9133 -7.1393 43 1 2.1174 3.5030 -6.8910 44 1 0.4774 3.5186 -6.1994 45 1 3.0645 6.0965 -6.2812 46 1 3.4788 5.9254 -4.5586 47 1 5.7126 5.6566 -6.0417 48 1 8.9586 5.6885 -6.8183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275666185.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:18 Heat of formation + Delta-G solvation = 16.036914 kcal Electronic energy + Delta-G solvation = -29781.990332 eV Core-core repulsion = 25681.213283 eV Total energy + Delta-G solvation = -4100.777049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.60074 -39.47056 -38.44073 -36.77993 -34.71449 -34.56722 -33.68445 -31.40194 -31.16628 -30.48132 -29.73345 -27.96740 -26.87008 -25.05402 -24.62129 -22.86133 -22.06387 -21.38724 -20.59726 -19.81250 -19.01625 -17.88263 -17.76651 -16.70222 -16.22470 -16.02778 -15.83705 -15.20445 -14.78301 -14.65524 -14.45644 -14.29024 -13.97774 -13.76213 -13.67342 -13.53692 -13.38397 -13.20515 -12.75332 -12.62349 -12.43914 -12.30228 -12.07758 -11.94978 -11.74783 -11.68925 -11.43357 -11.37674 -11.12850 -10.98476 -10.80869 -10.53456 -10.29967 -10.16261 -9.86045 -9.41565 -9.23350 -9.03757 -8.74249 -8.35510 -7.90515 -7.79916 -6.34797 -3.75230 1.72488 2.20076 2.39166 3.20385 3.30131 3.37045 3.39109 3.70733 3.98566 4.06545 4.19684 4.29622 4.57931 4.71630 4.75401 4.81524 4.87350 5.13743 5.18550 5.23562 5.28947 5.34127 5.37495 5.45746 5.50368 5.62991 5.68295 5.72935 5.76173 5.76738 5.79338 5.81969 6.01047 6.06061 6.11388 6.20547 6.36984 6.44666 6.55409 6.72754 6.76764 7.32422 7.42784 7.61598 7.72661 8.03108 8.13719 8.51690 8.69532 9.25287 9.62588 10.14666 10.83256 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008725 B = 0.003437 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.419291 B = 8143.696046 C = 9634.312892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.116 3.884 3 N -0.283 5.283 4 C -0.024 4.024 5 C -0.180 4.180 6 C -0.012 4.012 7 C 0.607 3.393 8 O -0.541 6.541 9 N -0.691 5.691 10 C 0.145 3.855 11 H 0.089 0.911 12 C -0.161 4.161 13 C 0.044 3.956 14 N -0.515 5.515 15 C 0.025 3.975 16 C 0.043 3.957 17 C 0.447 3.553 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.296 4.296 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.928 3.072 25 H -0.269 1.269 26 H -0.282 1.282 27 H -0.282 1.282 28 N -0.253 5.253 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.179 0.821 35 H 0.160 0.840 36 H 0.409 0.591 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.013 0.987 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.253 -4.343 12.952 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.004 4.004 3 N -0.072 5.072 4 C -0.166 4.166 5 C -0.208 4.208 6 C -0.172 4.172 7 C 0.392 3.608 8 O -0.417 6.417 9 N -0.342 5.342 10 C 0.039 3.961 11 H 0.107 0.893 12 C -0.219 4.219 13 C -0.085 4.085 14 N -0.238 5.238 15 C -0.123 4.123 16 C -0.088 4.088 17 C 0.232 3.768 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.426 4.426 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.755 3.245 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.208 1.208 28 N -0.089 5.089 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.197 0.803 35 H 0.178 0.822 36 H 0.244 0.756 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.031 0.969 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.543 -5.344 12.704 22.310 hybrid contribution 1.223 0.553 -0.325 1.381 sum -16.320 -4.791 12.379 21.036 Atomic orbital electron populations 1.22066 0.93210 1.03252 1.03860 1.21987 0.96585 0.76978 1.04808 1.45585 1.32542 1.10349 1.18767 1.22825 0.99667 0.95406 0.98729 1.21767 1.04478 0.96099 0.98422 1.21947 1.02868 0.93215 0.99189 1.16833 0.78728 0.85275 0.79988 1.90770 1.46174 1.35901 1.68859 1.45564 1.47305 1.14308 1.26974 1.20989 1.00110 0.85138 0.89823 0.89284 1.22151 0.98521 0.99472 1.01805 1.22478 0.96421 0.95628 0.93957 1.61533 1.01678 1.31515 1.29093 1.22501 1.01325 0.98496 0.89952 1.21917 0.90316 0.95740 1.00850 1.19710 0.83445 0.89529 0.84077 1.90478 1.79912 1.18740 1.56996 1.41870 1.07381 1.10179 1.60793 1.19722 0.88669 0.91126 1.43064 0.87986 1.25245 0.98174 0.96892 0.97696 1.69622 1.19972 1.15076 1.49650 0.85822 0.80151 0.80603 0.77887 1.19310 1.20815 1.20766 1.73467 1.22475 0.97966 1.14999 0.92014 0.90636 0.90367 0.88707 0.88041 0.80349 0.82201 0.75601 0.91637 0.92485 0.91799 0.90294 0.93355 0.96868 0.88741 0.92194 0.93521 0.89435 0.77532 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.02 37.16 0.37 -0.68 16 2 C 0.12 0.83 7.12 -4.04 -0.03 0.80 16 3 N -0.28 -3.24 3.41 -61.33 -0.21 -3.45 16 4 C -0.02 -0.26 11.40 -17.17 -0.20 -0.45 16 5 C -0.18 -2.49 10.81 -39.36 -0.43 -2.91 16 6 C -0.01 -0.19 7.13 -82.76 -0.59 -0.78 16 7 C 0.61 10.51 7.79 -12.39 -0.10 10.42 16 8 O -0.54 -10.73 16.58 5.31 0.09 -10.64 16 9 N -0.69 -10.36 4.79 -54.79 -0.26 -10.63 16 10 C 0.14 1.95 2.52 -67.93 -0.17 1.78 16 11 H 0.09 1.41 6.22 -51.93 -0.32 1.08 16 12 C -0.16 -1.74 9.49 37.16 0.35 -1.38 16 13 C 0.04 0.56 4.53 -3.82 -0.02 0.54 16 14 N -0.51 -8.61 4.17 -244.37 -1.02 -9.63 16 15 C 0.03 0.40 9.19 60.06 0.55 0.95 16 16 C 0.04 0.82 5.30 -4.97 -0.03 0.79 16 17 C 0.45 11.00 7.42 -10.99 -0.08 10.92 16 18 O -0.58 -15.91 13.96 5.55 0.08 -15.83 16 19 N -0.57 -14.98 5.29 -10.96 -0.06 -15.04 16 20 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 21 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -25.36 13.05 55.50 0.72 -24.63 16 24 Si 0.93 21.66 29.55 -169.99 -5.02 16.64 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 28 N -0.25 -3.68 11.36 33.42 0.38 -3.30 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.40 8.04 -51.93 -0.42 -0.02 16 34 H 0.18 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.41 5.89 8.33 -40.82 -0.34 5.55 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.86 7.99 -51.93 -0.42 0.44 16 41 H 0.05 0.56 8.05 -51.93 -0.42 0.14 16 42 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 43 H 0.09 1.88 5.79 -51.93 -0.30 1.58 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 46 H 0.09 1.64 6.50 -51.93 -0.34 1.30 16 47 H 0.39 10.03 7.90 -40.82 -0.32 9.71 16 48 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -36.09 403.11 -7.28 -43.37 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -7.45 Total: 15.26 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: -0.60 Total: 11.82 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: -0.45 Total: -66.69 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: 0.17 Total: -26.47 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.09 -7.28 -43.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275666185.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.411 kcal (2) G-P(sol) polarization free energy of solvation -36.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds