Wall clock time and date at job start Tue Mar 31 2020 20:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.46861 * 2 1 4 4 C 1.35035 * 124.88543 * 125.00493 * 3 2 1 5 5 C 1.35363 * 107.23085 * 180.20197 * 4 3 2 6 6 C 1.41504 * 105.50318 * 359.63089 * 5 4 3 7 7 C 1.47710 * 126.51983 * 180.17541 * 6 5 4 8 8 O 1.21568 * 120.00124 * 0.25119 * 7 6 5 9 9 N 1.34775 * 119.99902 * 180.26234 * 7 6 5 10 10 C 1.46497 * 120.00110 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47222 * 34.59917 * 10 9 7 12 12 C 1.53004 * 109.46974 * 274.60207 * 10 9 7 13 13 C 1.52997 * 109.47582 * 154.59975 * 10 9 7 14 14 N 1.46901 * 109.47085 * 305.18415 * 13 10 9 15 15 C 1.46899 * 110.99979 * 163.93378 * 14 13 10 16 16 C 1.46903 * 110.99827 * 287.88643 * 14 13 10 17 17 C 1.50701 * 109.46861 * 169.99969 * 16 14 13 18 18 O 1.21292 * 120.00155 * 0.02562 * 17 16 14 19 19 N 1.34772 * 119.99551 * 180.02562 * 17 16 14 20 20 C 1.37104 * 119.99982 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99473 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00390 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99918 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00287 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46982 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.47159 * 119.99945 * 24 22 20 27 27 H 1.48494 * 109.47338 * 240.00330 * 24 22 20 28 28 N 1.28471 * 124.88500 * 304.95272 * 3 2 1 29 29 H 1.09001 * 109.47426 * 300.00255 * 1 2 3 30 30 H 1.09004 * 109.47273 * 60.00271 * 1 2 3 31 31 H 1.09001 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46544 * 239.99611 * 2 1 3 33 33 H 1.08999 * 109.46413 * 119.99904 * 2 1 3 34 34 H 1.08003 * 126.38171 * 359.93527 * 4 3 2 35 35 H 1.07997 * 127.24747 * 179.75574 * 5 4 3 36 36 H 0.96998 * 120.00140 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47607 * 179.97438 * 12 10 9 38 38 H 1.08999 * 109.46909 * 299.99902 * 12 10 9 39 39 H 1.08998 * 109.47533 * 59.99141 * 12 10 9 40 40 H 1.09001 * 109.47086 * 65.17915 * 13 10 9 41 41 H 1.08997 * 109.47157 * 185.18047 * 13 10 9 42 42 H 1.09001 * 109.46924 * 54.89347 * 15 14 13 43 43 H 1.08999 * 109.46974 * 174.89242 * 15 14 13 44 44 H 1.08994 * 109.47179 * 294.89431 * 15 14 13 45 45 H 1.08998 * 109.47151 * 290.00482 * 16 14 13 46 46 H 1.09007 * 109.46796 * 50.00015 * 16 14 13 47 47 H 0.97001 * 120.00261 * 359.97438 * 19 17 16 48 48 H 0.96999 * 120.00311 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8748 1.8976 0.9073 5 6 3.0792 3.1934 0.5737 6 6 2.3014 3.4120 -0.5881 7 6 2.1880 4.6753 -1.3451 8 8 2.8051 5.6583 -0.9833 9 7 1.4002 4.7383 -2.4368 10 6 1.2882 5.9910 -3.1880 11 1 2.2446 6.5135 -3.1679 12 6 0.2119 6.8728 -2.5515 13 6 0.9050 5.6843 -4.6371 14 7 1.8722 4.7385 -5.2097 15 6 1.3479 4.1290 -6.4392 16 6 3.1648 5.3918 -5.4558 17 6 4.1954 4.3498 -5.8070 18 8 3.8836 3.1784 -5.8488 19 7 5.4634 4.7197 -6.0748 20 6 6.4011 3.7718 -6.3938 21 1 6.1235 2.7288 -6.4310 22 6 7.7083 4.1531 -6.6704 23 7 8.0459 5.4223 -6.6256 24 14 8.9861 2.8615 -7.1044 25 1 8.3566 1.5167 -7.0861 26 1 9.5267 3.1360 -8.4599 27 1 10.0906 2.9051 -6.1128 28 7 1.6940 2.2752 -0.8638 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3116 1.3753 1.7457 35 1 3.7057 3.9091 1.0851 36 1 0.9080 3.9540 -2.7256 37 1 0.1288 7.8051 -3.1101 38 1 -0.7445 6.3503 -2.5716 39 1 0.4848 7.0913 -1.5191 40 1 -0.0922 5.2450 -4.6640 41 1 0.9114 6.6068 -5.2177 42 1 1.0601 4.9133 -7.1393 43 1 2.1174 3.5030 -6.8910 44 1 0.4774 3.5186 -6.1994 45 1 3.0645 6.0965 -6.2812 46 1 3.4788 5.9254 -4.5586 47 1 5.7126 5.6566 -6.0417 48 1 8.9586 5.6885 -6.8183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275666185.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:17 Heat of formation + Delta-G solvation = -12.235072 kcal Electronic energy + Delta-G solvation = -29783.216297 eV Core-core repulsion = 25681.213283 eV Total energy + Delta-G solvation = -4102.003014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.56409 -40.79326 -40.18189 -38.24891 -36.13652 -35.53809 -35.44185 -33.28781 -32.46062 -31.46536 -30.59603 -29.59426 -27.97120 -26.61943 -25.95561 -23.91337 -23.22409 -22.31782 -21.81389 -20.98650 -20.80254 -19.85606 -18.85515 -17.95837 -17.58534 -17.28270 -16.87311 -16.65209 -16.58638 -15.98816 -15.77274 -15.49162 -15.28843 -15.24118 -15.03079 -14.88198 -14.48085 -14.30506 -13.97421 -13.71017 -13.46606 -13.38689 -13.25273 -13.09164 -12.95682 -12.92038 -12.83036 -12.67447 -12.46723 -12.37947 -12.29158 -12.13223 -11.81684 -11.68825 -11.45646 -11.17538 -10.28626 -10.25663 -10.07272 -10.00712 -9.85940 -9.18463 -8.47238 -5.96236 0.60796 1.23602 1.34769 1.38700 1.53638 1.60501 2.04451 2.24051 2.29083 2.48472 2.79791 3.19189 3.35600 3.41141 3.79517 3.95483 3.98816 4.06578 4.13155 4.18566 4.30698 4.32912 4.37436 4.41290 4.50786 4.57533 4.65096 4.72013 4.74746 4.77696 4.80270 4.82270 4.84494 4.89618 5.06446 5.20595 5.23591 5.30116 5.39222 5.40062 5.57372 5.87573 5.94918 6.07003 6.22222 6.54428 6.59376 6.97400 7.11908 7.27277 7.55170 8.11016 8.70829 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008725 B = 0.003437 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.419291 B = 8143.696046 C = 9634.312892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.105 3.895 3 N -0.279 5.279 4 C -0.001 4.001 5 C -0.212 4.212 6 C -0.049 4.049 7 C 0.597 3.403 8 O -0.580 6.580 9 N -0.684 5.684 10 C 0.140 3.860 11 H 0.061 0.939 12 C -0.150 4.150 13 C 0.051 3.949 14 N -0.533 5.533 15 C 0.031 3.969 16 C 0.058 3.942 17 C 0.443 3.557 18 O -0.610 6.610 19 N -0.577 5.577 20 C -0.331 4.331 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.268 1.268 27 H -0.272 1.272 28 N -0.270 5.270 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.143 0.857 34 H 0.228 0.772 35 H 0.158 0.842 36 H 0.411 0.589 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.050 0.950 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.393 0.607 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.377 -5.373 13.455 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.013 4.013 3 N -0.068 5.068 4 C -0.144 4.144 5 C -0.240 4.240 6 C -0.208 4.208 7 C 0.383 3.617 8 O -0.460 6.460 9 N -0.333 5.333 10 C 0.035 3.965 11 H 0.079 0.921 12 C -0.208 4.208 13 C -0.077 4.077 14 N -0.258 5.258 15 C -0.117 4.117 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.496 6.496 19 N -0.215 5.215 20 C -0.461 4.461 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.564 5.564 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.193 1.193 27 H -0.197 1.197 28 N -0.107 5.107 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.161 0.839 34 H 0.244 0.756 35 H 0.176 0.824 36 H 0.247 0.753 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.125 0.875 41 H 0.090 0.910 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.227 0.773 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.712 -6.361 13.183 23.757 hybrid contribution 1.495 0.783 -0.446 1.745 sum -17.218 -5.578 12.738 22.132 Atomic orbital electron populations 1.22035 0.92643 1.04582 1.02602 1.22472 0.97154 0.74860 1.06836 1.46116 1.31741 1.11187 1.17799 1.23467 0.97859 0.94293 0.98808 1.22002 1.05454 0.97949 0.98620 1.21986 1.04856 0.93417 1.00517 1.17189 0.78527 0.85533 0.80461 1.90722 1.47879 1.37299 1.70061 1.45611 1.46440 1.14968 1.26300 1.21138 0.99861 0.84736 0.90726 0.92056 1.22055 0.98114 1.00044 1.00634 1.22556 0.96302 0.96014 0.92830 1.61461 1.01628 1.32975 1.29708 1.22384 1.00469 0.98821 0.90001 1.21711 0.90054 0.94065 1.01508 1.20729 0.83713 0.90343 0.82196 1.90450 1.80535 1.20719 1.57892 1.41964 1.07996 1.09878 1.61621 1.19682 0.90186 0.90701 1.45492 0.90382 1.26076 0.99467 0.99108 0.96828 1.69691 1.20804 1.16410 1.49453 0.84858 0.77413 0.77655 0.78318 1.19733 1.19291 1.19691 1.73398 1.22983 0.98130 1.16231 0.92109 0.93007 0.87712 0.88828 0.83875 0.75578 0.82389 0.75307 0.89405 0.90602 0.93724 0.87486 0.91014 0.94569 0.93081 0.89992 0.91226 0.89330 0.77323 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 10.02 71.98 0.72 -1.01 16 2 C 0.10 1.24 7.12 86.38 0.61 1.85 16 3 N -0.28 -6.03 3.41 -347.95 -1.19 -7.22 16 4 C 0.00 -0.03 11.40 83.54 0.95 0.92 16 5 C -0.21 -6.00 10.81 22.41 0.24 -5.76 16 6 C -0.05 -1.64 7.13 42.46 0.30 -1.34 16 7 C 0.60 21.82 7.79 86.75 0.68 22.49 16 8 O -0.58 -24.53 16.58 -3.93 -0.07 -24.59 16 9 N -0.68 -20.96 4.79 -445.54 -2.13 -23.10 16 10 C 0.14 3.71 2.52 44.99 0.11 3.83 16 11 H 0.06 1.98 6.22 -2.39 -0.01 1.97 16 12 C -0.15 -3.03 9.49 71.98 0.68 -2.35 16 13 C 0.05 1.17 4.53 86.30 0.39 1.56 16 14 N -0.53 -17.40 4.17 -927.05 -3.87 -21.27 16 15 C 0.03 0.96 9.19 127.69 1.17 2.13 16 16 C 0.06 2.20 5.30 85.56 0.45 2.66 16 17 C 0.44 22.51 7.42 87.66 0.65 23.16 16 18 O -0.61 -34.97 13.96 -3.07 -0.04 -35.02 16 19 N -0.58 -31.66 5.29 -306.99 -1.62 -33.28 16 20 C -0.33 -19.72 9.68 84.04 0.81 -18.90 16 21 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 22 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 23 N -0.92 -52.14 13.05 21.66 0.28 -51.86 16 24 Si 0.99 44.61 29.55 68.60 2.03 46.64 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 N -0.27 -7.95 11.36 -48.17 -0.55 -8.49 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.14 0.51 8.04 -2.39 -0.02 0.49 16 34 H 0.23 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.41 11.99 8.33 -92.71 -0.77 11.22 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.11 1.93 7.99 -2.39 -0.02 1.91 16 41 H 0.07 1.39 8.05 -2.39 -0.02 1.37 16 42 H 0.04 0.94 8.13 -2.39 -0.02 0.92 16 43 H 0.05 2.05 5.79 -2.39 -0.01 2.04 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.07 2.33 8.12 -2.39 -0.02 2.31 16 46 H 0.09 3.38 6.50 -2.38 -0.02 3.36 16 47 H 0.39 20.82 7.90 -92.71 -0.73 20.09 16 48 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -83.52 403.11 0.58 -82.94 By element: Atomic # 1 Polarization: 46.92 SS G_CDS: -0.52 Total: 46.41 kcal Atomic # 6 Polarization: 20.59 SS G_CDS: 8.25 Total: 28.85 kcal Atomic # 7 Polarization: -136.14 SS G_CDS: -9.08 Total: -145.22 kcal Atomic # 8 Polarization: -59.50 SS G_CDS: -0.11 Total: -59.61 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -83.52 0.58 -82.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275666185.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.708 kcal (2) G-P(sol) polarization free energy of solvation -83.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds