Wall clock time and date at job start Tue Mar 31 2020 20:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47189 * 2 1 4 4 C 1.35033 * 124.88579 * 124.97068 * 3 2 1 5 5 C 1.35365 * 107.22786 * 179.76557 * 4 3 2 6 6 C 1.41500 * 105.50418 * 0.35854 * 5 4 3 7 7 C 1.47714 * 126.51919 * 179.90241 * 6 5 4 8 8 O 1.21570 * 119.99705 * 359.71327 * 7 6 5 9 9 N 1.34767 * 120.00182 * 179.71352 * 7 6 5 10 10 C 1.46496 * 120.00418 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.46854 * 322.99130 * 10 9 7 12 12 C 1.52996 * 109.47033 * 82.98727 * 10 9 7 13 13 C 1.53003 * 109.47432 * 202.98893 * 10 9 7 14 14 N 1.46905 * 109.46932 * 55.16414 * 13 10 9 15 15 C 1.46896 * 110.99494 * 198.92678 * 14 13 10 16 16 C 1.46896 * 110.99928 * 74.97408 * 14 13 10 17 17 C 1.50700 * 109.46712 * 189.99820 * 16 14 13 18 18 O 1.21291 * 120.00377 * 359.97438 * 17 16 14 19 19 N 1.34781 * 119.99959 * 180.02562 * 17 16 14 20 20 C 1.37093 * 120.00066 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00061 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00358 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99658 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00340 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46707 * 60.00568 * 24 22 20 26 26 H 1.48506 * 109.46972 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47255 * 299.99958 * 24 22 20 28 28 N 1.28469 * 124.88659 * 304.97698 * 3 2 1 29 29 H 1.09005 * 109.46842 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47623 * 300.00195 * 1 2 3 31 31 H 1.09001 * 109.47233 * 60.00306 * 1 2 3 32 32 H 1.08997 * 109.47623 * 239.99805 * 2 1 3 33 33 H 1.09003 * 109.46717 * 119.99784 * 2 1 3 34 34 H 1.08003 * 126.38448 * 0.03417 * 4 3 2 35 35 H 1.08001 * 127.24520 * 180.24570 * 5 4 3 36 36 H 0.97003 * 120.00138 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.47447 * 180.02562 * 12 10 9 38 38 H 1.08999 * 109.47259 * 299.99710 * 12 10 9 39 39 H 1.09002 * 109.47490 * 60.00398 * 12 10 9 40 40 H 1.08996 * 109.46834 * 175.15985 * 13 10 9 41 41 H 1.08994 * 109.47080 * 295.16120 * 13 10 9 42 42 H 1.09005 * 109.47191 * 54.12175 * 15 14 13 43 43 H 1.09003 * 109.47176 * 174.11787 * 15 14 13 44 44 H 1.08998 * 109.47704 * 294.12017 * 15 14 13 45 45 H 1.08995 * 109.47172 * 309.99956 * 16 14 13 46 46 H 1.08994 * 109.47207 * 70.00076 * 16 14 13 47 47 H 0.96999 * 119.99808 * 359.97438 * 19 17 16 48 48 H 0.96997 * 119.99787 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8743 1.8977 0.9077 5 6 3.0865 3.1908 0.5682 6 6 2.3005 3.4123 -0.5874 7 6 2.1867 4.6758 -1.3442 8 8 2.8035 5.6588 -0.9820 9 7 1.3992 4.7387 -2.4360 10 6 1.2868 5.9916 -3.1869 11 1 1.2984 6.8328 -2.4938 12 6 2.4645 6.1128 -4.1559 13 6 -0.0247 5.9980 -3.9749 14 7 -1.1483 5.7657 -3.0574 15 6 -2.3423 5.3224 -3.7893 16 6 -1.4345 6.9663 -2.2610 17 6 -2.4166 6.6234 -1.1706 18 8 -2.8370 5.4904 -1.0673 19 7 -2.8285 7.5759 -0.3106 20 6 -3.7214 7.2638 0.6818 21 1 -4.0951 6.2548 0.7741 22 6 -4.1457 8.2457 1.5687 23 7 -3.6913 9.4737 1.4560 24 14 -5.3629 7.8206 2.9203 25 1 -4.7826 6.7718 3.7970 26 1 -5.6518 9.0343 3.7259 27 1 -6.6213 7.3178 2.3131 28 7 1.6937 2.2753 -0.8635 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.3118 1.3752 1.7455 35 1 3.7206 3.9038 1.0740 36 1 0.9074 3.9542 -2.7252 37 1 2.3812 7.0453 -4.7143 38 1 3.3989 6.1084 -3.5945 39 1 2.4530 5.2716 -4.8490 40 1 -0.1494 6.9637 -4.4648 41 1 -0.0006 5.2094 -4.7269 42 1 -2.0938 4.4523 -4.3971 43 1 -3.1261 5.0577 -3.0795 44 1 -2.6932 6.1279 -4.4343 45 1 -0.5109 7.3354 -1.8153 46 1 -1.8604 7.7362 -2.9044 47 1 -2.4925 8.4821 -0.3933 48 1 -3.9872 10.1590 2.0753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275666186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:20 Heat of formation + Delta-G solvation = 15.750816 kcal Electronic energy + Delta-G solvation = -29808.807810 eV Core-core repulsion = 25708.018355 eV Total energy + Delta-G solvation = -4100.789455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.60932 -39.46432 -38.44096 -36.78185 -34.69384 -34.56620 -33.68794 -31.40000 -31.16919 -30.48369 -29.70065 -27.97383 -26.86711 -25.02766 -24.62192 -22.84613 -22.05952 -21.38971 -20.59846 -19.80245 -19.03304 -17.88375 -17.77384 -16.70226 -16.12902 -16.01563 -15.96587 -15.19568 -14.69155 -14.66280 -14.46985 -14.31074 -13.98127 -13.81416 -13.59265 -13.53664 -13.40737 -13.14335 -12.75605 -12.62903 -12.33993 -12.26779 -12.06411 -11.94453 -11.73937 -11.63946 -11.43030 -11.34379 -11.14599 -10.96845 -10.80907 -10.54509 -10.39522 -10.15419 -9.86350 -9.40351 -9.24258 -9.04599 -8.74264 -8.37692 -7.91082 -7.78638 -6.34918 -3.75425 1.71664 2.18796 2.39359 3.23789 3.28923 3.33142 3.39107 3.69928 3.98356 4.05773 4.20531 4.29224 4.63310 4.71652 4.77879 4.82625 4.85764 5.14075 5.19425 5.27300 5.29771 5.37472 5.39332 5.50118 5.55026 5.63207 5.68194 5.72159 5.75145 5.80970 5.81513 5.94739 5.97989 6.05696 6.11067 6.21451 6.36332 6.43852 6.57878 6.72570 6.76566 7.31512 7.42507 7.60949 7.72513 8.02703 8.12940 8.51340 8.69417 9.24887 9.62158 10.14472 10.82995 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008431 B = 0.003528 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.237730 B = 7934.187992 C = 9494.197854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.119 3.881 3 N -0.284 5.284 4 C -0.024 4.024 5 C -0.180 4.180 6 C -0.012 4.012 7 C 0.607 3.393 8 O -0.542 6.542 9 N -0.691 5.691 10 C 0.146 3.854 11 H 0.088 0.912 12 C -0.161 4.161 13 C 0.043 3.957 14 N -0.515 5.515 15 C 0.024 3.976 16 C 0.044 3.956 17 C 0.447 3.553 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.101 0.899 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 N -0.253 5.253 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.179 0.821 35 H 0.160 0.840 36 H 0.409 0.591 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.014 0.986 45 H 0.087 0.913 46 H 0.047 0.953 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.115 -14.874 -8.324 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 N -0.073 5.073 4 C -0.166 4.166 5 C -0.208 4.208 6 C -0.172 4.172 7 C 0.391 3.609 8 O -0.417 6.417 9 N -0.341 5.341 10 C 0.041 3.959 11 H 0.106 0.894 12 C -0.220 4.220 13 C -0.086 4.086 14 N -0.238 5.238 15 C -0.124 4.124 16 C -0.087 4.087 17 C 0.232 3.768 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.119 0.881 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.200 1.200 28 N -0.089 5.089 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.196 0.804 35 H 0.178 0.822 36 H 0.244 0.756 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.115 0.885 44 H 0.032 0.968 45 H 0.105 0.895 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.554 -15.748 -8.321 21.791 hybrid contribution -0.339 1.050 0.704 1.309 sum 12.215 -14.698 -7.617 20.573 Atomic orbital electron populations 1.22092 0.92793 1.03239 1.04614 1.21979 0.96961 0.76782 1.04365 1.45612 1.32375 1.10372 1.18915 1.22828 0.99449 0.95676 0.98692 1.21767 1.04610 0.95970 0.98457 1.21953 1.02278 0.93236 0.99775 1.16834 0.79186 0.85329 0.79520 1.90768 1.46832 1.35620 1.68528 1.45573 1.46629 1.14357 1.27570 1.20973 0.93681 0.87841 0.93411 0.89439 1.22151 0.98797 1.01839 0.99206 1.22487 0.90668 1.01051 0.94352 1.61537 1.06041 1.32592 1.23661 1.22541 0.93740 0.98293 0.97811 1.21925 0.99898 0.91093 0.95801 1.19707 0.85713 0.86250 0.85105 1.90465 1.60246 1.20820 1.74631 1.41852 1.40207 1.10763 1.27356 1.19619 1.19360 0.97394 1.06325 0.88100 1.25242 0.98770 0.94880 0.99042 1.69611 1.44625 1.01543 1.38580 0.85940 0.80387 0.77609 0.80390 1.19974 1.20982 1.19984 1.73466 1.21195 0.98170 1.16070 0.90410 0.91566 0.90427 0.89089 0.88102 0.80354 0.82211 0.75581 0.91653 0.91734 0.92512 0.93265 0.90326 0.92382 0.88511 0.96762 0.89478 0.93488 0.77531 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.02 37.16 0.37 -1.02 16 2 C 0.12 0.84 7.12 -4.04 -0.03 0.81 16 3 N -0.28 -3.21 3.41 -61.33 -0.21 -3.42 16 4 C -0.02 -0.26 11.40 -17.17 -0.20 -0.45 16 5 C -0.18 -2.46 10.81 -39.36 -0.43 -2.89 16 6 C -0.01 -0.19 7.13 -82.77 -0.59 -0.78 16 7 C 0.61 10.44 7.76 -12.39 -0.10 10.34 16 8 O -0.54 -10.66 16.61 5.30 0.09 -10.57 16 9 N -0.69 -10.34 4.82 -54.80 -0.26 -10.61 16 10 C 0.15 1.97 2.55 -67.93 -0.17 1.80 16 11 H 0.09 1.38 6.41 -51.93 -0.33 1.05 16 12 C -0.16 -1.76 9.46 37.16 0.35 -1.41 16 13 C 0.04 0.55 4.54 -3.82 -0.02 0.53 16 14 N -0.51 -8.55 4.16 -244.38 -1.02 -9.57 16 15 C 0.02 0.38 9.17 60.06 0.55 0.93 16 16 C 0.04 0.83 5.28 -4.98 -0.03 0.81 16 17 C 0.45 10.94 7.52 -10.98 -0.08 10.86 16 18 O -0.58 -15.82 13.88 5.55 0.08 -15.74 16 19 N -0.57 -14.90 5.29 -10.96 -0.06 -14.96 16 20 C -0.30 -8.53 9.68 -14.94 -0.14 -8.68 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 23 N -0.90 -25.28 13.05 55.50 0.72 -24.56 16 24 Si 0.93 21.61 29.55 -169.99 -5.02 16.59 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 28 N -0.25 -3.65 11.36 33.42 0.38 -3.27 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.40 8.04 -51.93 -0.42 -0.01 16 34 H 0.18 1.14 8.06 -52.48 -0.42 0.71 16 35 H 0.16 2.03 8.06 -52.49 -0.42 1.60 16 36 H 0.41 5.90 8.31 -40.82 -0.34 5.56 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.56 8.01 -51.93 -0.42 0.15 16 41 H 0.08 0.85 7.81 -51.93 -0.41 0.44 16 42 H 0.06 0.78 7.94 -51.93 -0.41 0.37 16 43 H 0.10 1.91 5.92 -51.93 -0.31 1.60 16 44 H 0.01 0.21 8.13 -51.93 -0.42 -0.22 16 45 H 0.09 1.61 6.66 -51.93 -0.35 1.26 16 46 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 47 H 0.39 9.98 7.90 -40.82 -0.32 9.66 16 48 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 403.13 15.07 6.08 6.08 Total: -1.00 -35.81 403.13 -7.28 -43.09 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -7.45 Total: 15.58 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -0.60 Total: 11.37 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: -0.44 Total: -66.39 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: 0.17 Total: -26.31 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.81 -7.28 -43.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275666186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.845 kcal (2) G-P(sol) polarization free energy of solvation -35.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds