Wall clock time and date at job start Tue Mar 31 2020 20:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47189 * 2 1 4 4 C 1.35033 * 124.88579 * 124.97068 * 3 2 1 5 5 C 1.35365 * 107.22786 * 179.76557 * 4 3 2 6 6 C 1.41500 * 105.50418 * 0.35854 * 5 4 3 7 7 C 1.47714 * 126.51919 * 179.90241 * 6 5 4 8 8 O 1.21570 * 119.99705 * 359.71327 * 7 6 5 9 9 N 1.34767 * 120.00182 * 179.71352 * 7 6 5 10 10 C 1.46496 * 120.00418 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.46854 * 322.99130 * 10 9 7 12 12 C 1.52996 * 109.47033 * 82.98727 * 10 9 7 13 13 C 1.53003 * 109.47432 * 202.98893 * 10 9 7 14 14 N 1.46905 * 109.46932 * 55.16414 * 13 10 9 15 15 C 1.46896 * 110.99494 * 198.92678 * 14 13 10 16 16 C 1.46896 * 110.99928 * 74.97408 * 14 13 10 17 17 C 1.50700 * 109.46712 * 189.99820 * 16 14 13 18 18 O 1.21291 * 120.00377 * 359.97438 * 17 16 14 19 19 N 1.34781 * 119.99959 * 180.02562 * 17 16 14 20 20 C 1.37093 * 120.00066 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00061 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00358 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99658 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00340 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46707 * 60.00568 * 24 22 20 26 26 H 1.48506 * 109.46972 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47255 * 299.99958 * 24 22 20 28 28 N 1.28469 * 124.88659 * 304.97698 * 3 2 1 29 29 H 1.09005 * 109.46842 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47623 * 300.00195 * 1 2 3 31 31 H 1.09001 * 109.47233 * 60.00306 * 1 2 3 32 32 H 1.08997 * 109.47623 * 239.99805 * 2 1 3 33 33 H 1.09003 * 109.46717 * 119.99784 * 2 1 3 34 34 H 1.08003 * 126.38448 * 0.03417 * 4 3 2 35 35 H 1.08001 * 127.24520 * 180.24570 * 5 4 3 36 36 H 0.97003 * 120.00138 * 359.97438 * 9 7 6 37 37 H 1.09004 * 109.47447 * 180.02562 * 12 10 9 38 38 H 1.08999 * 109.47259 * 299.99710 * 12 10 9 39 39 H 1.09002 * 109.47490 * 60.00398 * 12 10 9 40 40 H 1.08996 * 109.46834 * 175.15985 * 13 10 9 41 41 H 1.08994 * 109.47080 * 295.16120 * 13 10 9 42 42 H 1.09005 * 109.47191 * 54.12175 * 15 14 13 43 43 H 1.09003 * 109.47176 * 174.11787 * 15 14 13 44 44 H 1.08998 * 109.47704 * 294.12017 * 15 14 13 45 45 H 1.08995 * 109.47172 * 309.99956 * 16 14 13 46 46 H 1.08994 * 109.47207 * 70.00076 * 16 14 13 47 47 H 0.96999 * 119.99808 * 359.97438 * 19 17 16 48 48 H 0.96997 * 119.99787 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8743 1.8977 0.9077 5 6 3.0865 3.1908 0.5682 6 6 2.3005 3.4123 -0.5874 7 6 2.1867 4.6758 -1.3442 8 8 2.8035 5.6588 -0.9820 9 7 1.3992 4.7387 -2.4360 10 6 1.2868 5.9916 -3.1869 11 1 1.2984 6.8328 -2.4938 12 6 2.4645 6.1128 -4.1559 13 6 -0.0247 5.9980 -3.9749 14 7 -1.1483 5.7657 -3.0574 15 6 -2.3423 5.3224 -3.7893 16 6 -1.4345 6.9663 -2.2610 17 6 -2.4166 6.6234 -1.1706 18 8 -2.8370 5.4904 -1.0673 19 7 -2.8285 7.5759 -0.3106 20 6 -3.7214 7.2638 0.6818 21 1 -4.0951 6.2548 0.7741 22 6 -4.1457 8.2457 1.5687 23 7 -3.6913 9.4737 1.4560 24 14 -5.3629 7.8206 2.9203 25 1 -4.7826 6.7718 3.7970 26 1 -5.6518 9.0343 3.7259 27 1 -6.6213 7.3178 2.3131 28 7 1.6937 2.2753 -0.8635 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.3118 1.3752 1.7455 35 1 3.7206 3.9038 1.0740 36 1 0.9074 3.9542 -2.7252 37 1 2.3812 7.0453 -4.7143 38 1 3.3989 6.1084 -3.5945 39 1 2.4530 5.2716 -4.8490 40 1 -0.1494 6.9637 -4.4648 41 1 -0.0006 5.2094 -4.7269 42 1 -2.0938 4.4523 -4.3971 43 1 -3.1261 5.0577 -3.0795 44 1 -2.6932 6.1279 -4.4343 45 1 -0.5109 7.3354 -1.8153 46 1 -1.8604 7.7362 -2.9044 47 1 -2.4925 8.4821 -0.3933 48 1 -3.9872 10.1590 2.0753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275666186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:19 Heat of formation + Delta-G solvation = -12.352554 kcal Electronic energy + Delta-G solvation = -29810.026464 eV Core-core repulsion = 25708.018355 eV Total energy + Delta-G solvation = -4102.008108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.56222 -40.77795 -40.17865 -38.24620 -36.13165 -35.53953 -35.44590 -33.28393 -32.46088 -31.46305 -30.60306 -29.59287 -27.96618 -26.61679 -25.96086 -23.91374 -23.22101 -22.31388 -21.80114 -20.98590 -20.80360 -19.85609 -18.85235 -17.94995 -17.58232 -17.18938 -16.97724 -16.63674 -16.60120 -15.98121 -15.71110 -15.48738 -15.36216 -15.22392 -15.02057 -14.88963 -14.51151 -14.27660 -13.95621 -13.70177 -13.47332 -13.39546 -13.23667 -13.07484 -12.98752 -12.90827 -12.84022 -12.63079 -12.48621 -12.39445 -12.31415 -12.14037 -11.80799 -11.70292 -11.44826 -11.17112 -10.28769 -10.25362 -10.06880 -10.00916 -9.85683 -9.18179 -8.46765 -5.95782 0.61011 1.23674 1.37747 1.38639 1.50313 1.61367 2.04925 2.24533 2.29469 2.48502 2.79560 3.19595 3.35780 3.41110 3.80648 3.95156 3.99334 4.05827 4.12601 4.19353 4.30418 4.33845 4.36718 4.41789 4.50558 4.57619 4.64925 4.71464 4.74123 4.77090 4.79658 4.80316 4.84206 4.87418 5.06859 5.22530 5.24636 5.30526 5.39046 5.40102 5.57626 5.87571 5.95419 6.06972 6.22492 6.54935 6.59938 6.97782 7.12120 7.27545 7.55497 8.11575 8.70829 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008431 B = 0.003528 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.237730 B = 7934.187992 C = 9494.197854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.279 5.279 4 C -0.001 4.001 5 C -0.212 4.212 6 C -0.049 4.049 7 C 0.597 3.403 8 O -0.580 6.580 9 N -0.684 5.684 10 C 0.142 3.858 11 H 0.059 0.941 12 C -0.150 4.150 13 C 0.050 3.950 14 N -0.534 5.534 15 C 0.030 3.970 16 C 0.058 3.942 17 C 0.442 3.558 18 O -0.610 6.610 19 N -0.577 5.577 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.274 1.274 26 H -0.269 1.269 27 H -0.269 1.269 28 N -0.270 5.270 29 H 0.108 0.892 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.143 0.857 34 H 0.228 0.772 35 H 0.159 0.841 36 H 0.411 0.589 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.030 0.970 45 H 0.089 0.911 46 H 0.071 0.929 47 H 0.394 0.606 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.544 -16.514 -8.904 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.007 4.007 3 N -0.069 5.069 4 C -0.144 4.144 5 C -0.240 4.240 6 C -0.208 4.208 7 C 0.382 3.618 8 O -0.459 6.459 9 N -0.333 5.333 10 C 0.037 3.963 11 H 0.077 0.923 12 C -0.209 4.209 13 C -0.077 4.077 14 N -0.258 5.258 15 C -0.118 4.118 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.496 6.496 19 N -0.214 5.214 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.199 1.199 26 H -0.193 1.193 27 H -0.194 1.194 28 N -0.108 5.108 29 H 0.126 0.874 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.129 0.871 33 H 0.161 0.839 34 H 0.245 0.755 35 H 0.176 0.824 36 H 0.247 0.753 37 H 0.106 0.894 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.049 0.951 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.227 0.773 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.977 -17.390 -8.952 23.472 hybrid contribution -0.467 1.436 0.860 1.738 sum 12.509 -15.954 -8.092 21.829 Atomic orbital electron populations 1.22070 0.93979 1.04417 1.02063 1.22451 0.95938 0.74844 1.07442 1.46133 1.31556 1.11226 1.17989 1.23474 0.97657 0.94565 0.98699 1.22004 1.05545 0.97810 0.98665 1.21984 1.04217 0.93428 1.01155 1.17195 0.79014 0.85617 0.79927 1.90721 1.48538 1.37021 1.69668 1.45622 1.45733 1.14924 1.27061 1.21119 0.95584 0.86234 0.93370 0.92253 1.22053 0.96378 1.03833 0.98618 1.22558 0.88050 1.03385 0.93751 1.61443 1.07376 1.31730 1.25236 1.22419 0.92413 1.00012 0.96940 1.21730 0.98166 0.92709 0.94689 1.20740 0.85512 0.85375 0.85405 1.90443 1.61414 1.22172 1.75576 1.41950 1.40523 1.11247 1.27718 1.19607 1.21287 0.96960 1.08347 0.90388 1.26065 1.00058 0.94561 1.00702 1.69682 1.45206 1.02143 1.39300 0.84988 0.78055 0.77819 0.77456 1.19929 1.19344 1.19384 1.73397 1.21606 0.98369 1.17407 0.87391 0.93672 0.93335 0.87148 0.83912 0.75545 0.82363 0.75311 0.89431 0.93739 0.90629 0.90943 0.87475 0.89525 0.92887 0.95115 0.89249 0.91167 0.77305 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 10.02 71.98 0.72 -1.83 16 2 C 0.11 1.25 7.12 86.38 0.61 1.87 16 3 N -0.28 -5.93 3.41 -347.96 -1.19 -7.11 16 4 C 0.00 -0.02 11.40 83.54 0.95 0.93 16 5 C -0.21 -5.90 10.81 22.41 0.24 -5.66 16 6 C -0.05 -1.62 7.13 42.46 0.30 -1.32 16 7 C 0.60 21.66 7.76 86.75 0.67 22.33 16 8 O -0.58 -24.33 16.61 -3.94 -0.07 -24.40 16 9 N -0.68 -20.94 4.82 -445.55 -2.15 -23.09 16 10 C 0.14 3.76 2.55 44.99 0.11 3.88 16 11 H 0.06 1.93 6.41 -2.39 -0.02 1.91 16 12 C -0.15 -3.07 9.46 71.98 0.68 -2.39 16 13 C 0.05 1.15 4.54 86.30 0.39 1.55 16 14 N -0.53 -17.32 4.16 -927.07 -3.86 -21.18 16 15 C 0.03 0.92 9.17 127.69 1.17 2.09 16 16 C 0.06 2.20 5.28 85.56 0.45 2.65 16 17 C 0.44 22.38 7.52 87.66 0.66 23.04 16 18 O -0.61 -34.85 13.88 -3.06 -0.04 -34.90 16 19 N -0.58 -31.52 5.29 -306.98 -1.62 -33.15 16 20 C -0.33 -19.74 9.68 84.04 0.81 -18.92 16 21 H 0.08 4.90 7.16 -2.91 -0.02 4.87 16 22 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 23 N -0.92 -52.01 13.05 21.66 0.28 -51.73 16 24 Si 0.99 44.51 29.55 68.60 2.03 46.53 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 28 N -0.27 -7.88 11.36 -48.18 -0.55 -8.43 16 29 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 1.02 8.08 -2.39 -0.02 1.00 16 32 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.14 0.46 8.04 -2.39 -0.02 0.44 16 34 H 0.23 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 36 H 0.41 12.00 8.31 -92.71 -0.77 11.23 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.04 1.10 8.13 -2.39 -0.02 1.08 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.40 8.01 -2.39 -0.02 1.38 16 41 H 0.11 1.91 7.81 -2.39 -0.02 1.89 16 42 H 0.09 2.13 7.94 -2.38 -0.02 2.11 16 43 H 0.05 2.12 5.92 -2.39 -0.01 2.11 16 44 H 0.03 0.83 8.13 -2.39 -0.02 0.81 16 45 H 0.09 3.35 6.66 -2.39 -0.02 3.34 16 46 H 0.07 2.33 8.11 -2.39 -0.02 2.31 16 47 H 0.39 20.71 7.90 -92.71 -0.73 19.98 16 48 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -83.50 403.13 0.58 -82.92 By element: Atomic # 1 Polarization: 47.16 SS G_CDS: -0.52 Total: 46.64 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: 8.26 Total: 27.88 kcal Atomic # 7 Polarization: -135.60 SS G_CDS: -9.08 Total: -144.67 kcal Atomic # 8 Polarization: -59.19 SS G_CDS: -0.11 Total: -59.29 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -83.50 0.58 -82.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275666186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.565 kcal (2) G-P(sol) polarization free energy of solvation -83.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds