Wall clock time and date at job start Tue Mar 31 2020 19:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47351 * 2 1 4 4 C 1.53003 * 109.46907 * 240.00033 * 2 1 3 5 5 N 1.46500 * 109.47034 * 184.99815 * 4 2 1 6 6 C 1.46504 * 120.00121 * 269.99970 * 5 4 2 7 7 C 1.36933 * 119.99690 * 90.00347 * 5 4 2 8 8 H 1.08005 * 120.00418 * 22.34193 * 7 5 4 9 9 C 1.38817 * 120.00139 * 202.33917 * 7 5 4 10 10 N 1.31615 * 119.99429 * 11.36054 * 9 7 5 11 11 Si 1.86794 * 120.00275 * 191.35362 * 9 7 5 12 12 H 1.48499 * 109.47145 * 90.00097 * 11 9 7 13 13 H 1.48497 * 109.47327 * 210.00315 * 11 9 7 14 14 H 1.48505 * 109.47231 * 330.00343 * 11 9 7 15 15 N 1.46498 * 109.47213 * 120.00189 * 2 1 3 16 16 C 1.34772 * 120.00347 * 274.99623 * 15 2 1 17 17 O 1.21592 * 119.99800 * 0.02562 * 16 15 2 18 18 C 1.47524 * 120.00159 * 179.97438 * 16 15 2 19 19 C 1.36596 * 125.76801 * 179.71797 * 18 16 15 20 20 N 1.34818 * 106.83750 * 179.89664 * 19 18 16 21 21 C 1.46498 * 126.59509 * 180.14799 * 20 19 18 22 22 C 1.53001 * 109.47222 * 125.27587 * 21 20 19 23 23 H 1.09007 * 110.43555 * 305.70260 * 22 21 20 24 24 C 1.54804 * 110.48951 * 183.15517 * 22 21 20 25 25 C 1.55221 * 101.98848 * 220.51957 * 24 22 21 26 26 O 1.44375 * 103.56739 * 36.88313 * 25 24 22 27 27 C 1.43747 * 106.97427 * 320.01240 * 26 25 24 28 28 N 1.40209 * 106.81032 * 0.36194 * 20 19 18 29 29 N 1.28763 * 108.36866 * 359.76941 * 28 20 19 30 30 H 1.09002 * 109.46987 * 299.99557 * 1 2 3 31 31 H 1.09004 * 109.47469 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47272 * 59.99550 * 1 2 3 33 33 H 1.08996 * 109.47481 * 305.00524 * 4 2 1 34 34 H 1.09001 * 109.46862 * 65.00344 * 4 2 1 35 35 H 1.09001 * 109.46714 * 94.23062 * 6 5 4 36 36 H 1.08998 * 109.46919 * 214.22481 * 6 5 4 37 37 H 1.08993 * 109.47151 * 334.22738 * 6 5 4 38 38 H 0.97011 * 119.99978 * 179.97438 * 10 9 7 39 39 H 0.97008 * 119.99684 * 95.00221 * 15 2 1 40 40 H 1.07997 * 126.58249 * 0.04043 * 19 18 16 41 41 H 1.08998 * 109.47311 * 245.27519 * 21 20 19 42 42 H 1.09004 * 109.47347 * 5.27368 * 21 20 19 43 43 H 1.08996 * 110.90803 * 338.64261 * 24 22 21 44 44 H 1.09001 * 110.90682 * 102.24183 * 24 22 21 45 45 H 1.09004 * 110.51736 * 278.38403 * 25 24 22 46 46 H 1.09005 * 110.77885 * 155.50188 * 25 24 22 47 47 H 1.09003 * 109.87741 * 267.08765 * 27 26 25 48 48 H 1.08992 * 110.00533 * 146.01079 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.3343 0.2341 -1.7614 7 6 4.0848 -1.9159 -0.6025 8 1 3.5337 -2.8400 -0.5089 9 6 5.3862 -1.8327 -0.1265 10 7 5.9793 -0.6614 -0.0339 11 14 6.2954 -3.3829 0.3828 12 1 7.0228 -3.9371 -0.7872 13 1 7.2648 -3.0571 1.4595 14 1 5.3213 -4.3871 0.8810 15 7 2.0183 -0.6906 1.1961 16 6 2.1471 -0.0184 2.3571 17 8 1.8576 1.1613 2.4119 18 6 2.6384 -0.7140 3.5617 19 6 2.8186 -0.1491 4.7922 20 7 3.2748 -1.1225 5.6058 21 6 3.6092 -0.9886 7.0258 22 6 2.8281 -2.0268 7.8338 23 1 1.7608 -1.9444 7.6285 24 6 3.1036 -1.8546 9.3474 25 6 3.2158 -3.3274 9.8243 26 8 3.8816 -3.9889 8.7273 27 6 3.3308 -3.4481 7.5146 28 7 3.3725 -2.2865 4.8303 29 7 2.9898 -2.0093 3.6325 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 -0.8899 33 1 1.6053 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1370 35 1 4.6022 0.9455 -0.9803 36 1 5.2403 -0.2028 -2.1813 37 1 3.7810 0.7484 -2.5471 38 1 6.8886 -0.6031 0.2991 39 1 2.2490 -1.6319 1.1525 40 1 2.6295 0.8793 5.0623 41 1 4.6783 -1.1498 7.1641 42 1 3.3454 0.0120 7.3684 43 1 4.0386 -1.3198 9.5142 44 1 2.2736 -1.3466 9.8385 45 1 2.2254 -3.7533 9.9853 46 1 3.8138 -3.3952 10.7332 47 1 2.5002 -4.0677 7.1762 48 1 4.0992 -3.4049 6.7429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275689430.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:23 Heat of formation + Delta-G solvation = 41.121336 kcal Electronic energy + Delta-G solvation = -30134.386070 eV Core-core repulsion = 26034.696764 eV Total energy + Delta-G solvation = -4099.689307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.99809 -39.77155 -38.80871 -36.21475 -35.36169 -33.89996 -32.47607 -31.38319 -30.72930 -30.01941 -29.25648 -26.74087 -26.10418 -25.51701 -23.71009 -23.07252 -22.07663 -21.58654 -21.02887 -20.23655 -19.55504 -17.88729 -16.91533 -16.63583 -16.52189 -15.83670 -15.67348 -15.53073 -15.21564 -14.78207 -14.53858 -14.16319 -14.08573 -13.62905 -13.55737 -13.39570 -13.05321 -12.82647 -12.77251 -12.31727 -12.10803 -11.86760 -11.83805 -11.74498 -11.52746 -11.33656 -11.26291 -11.20651 -10.92760 -10.76485 -10.59229 -10.33766 -10.23173 -10.18818 -9.94913 -9.93696 -9.73426 -9.44075 -9.02726 -8.47029 -8.19072 -6.69711 -5.65156 -3.10750 1.32199 2.07093 2.14793 3.45663 3.52990 3.54936 3.58882 3.76418 3.92119 3.98146 4.06999 4.28656 4.51501 4.58165 4.59249 4.72619 4.76712 4.85096 5.02274 5.14308 5.23333 5.28731 5.31960 5.43501 5.44445 5.49290 5.59078 5.61498 5.72157 5.77761 5.92007 6.04140 6.14141 6.23529 6.31347 6.44708 6.52031 6.55701 6.56908 6.80680 6.94534 7.32245 7.45304 7.80286 7.87657 8.12917 8.43260 8.45838 8.94617 9.30058 9.93563 10.42341 11.39251 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.003402 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.567672 B = 8229.434570 C = 9673.283122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.598 5.598 6 C 0.165 3.835 7 C -0.254 4.254 8 H 0.068 0.932 9 C 0.012 3.988 10 N -0.902 5.902 11 Si 0.896 3.104 12 H -0.290 1.290 13 H -0.294 1.294 14 H -0.275 1.275 15 N -0.668 5.668 16 C 0.603 3.397 17 O -0.563 6.563 18 C -0.081 4.081 19 C 0.084 3.916 20 N -0.370 5.370 21 C 0.132 3.868 22 C -0.136 4.136 23 H 0.092 0.908 24 C -0.147 4.147 25 C 0.046 3.954 26 O -0.377 6.377 27 C 0.051 3.949 28 N -0.073 5.073 29 N -0.188 5.188 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.027 0.973 36 H 0.044 0.956 37 H -0.005 1.005 38 H 0.250 0.750 39 H 0.412 0.588 40 H 0.201 0.799 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.060 0.940 46 H 0.094 0.906 47 H 0.063 0.937 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 0.783 17.149 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.384 4.384 8 H 0.085 0.915 9 C -0.187 4.187 10 N -0.546 5.546 11 Si 0.726 3.274 12 H -0.217 1.217 13 H -0.221 1.221 14 H -0.200 1.200 15 N -0.316 5.316 16 C 0.387 3.613 17 O -0.443 6.443 18 C -0.220 4.220 19 C -0.072 4.072 20 N -0.156 5.156 21 C 0.011 3.989 22 C -0.155 4.155 23 H 0.110 0.890 24 C -0.185 4.185 25 C -0.031 4.031 26 O -0.296 6.296 27 C -0.026 4.026 28 N -0.053 5.053 29 N -0.061 5.061 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.014 0.986 38 H 0.060 0.940 39 H 0.249 0.751 40 H 0.217 0.783 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.079 0.921 46 H 0.112 0.888 47 H 0.081 0.919 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.557 -0.007 17.211 19.220 hybrid contribution 0.470 0.152 0.559 0.746 sum -8.086 0.144 17.770 19.524 Atomic orbital electron populations 1.22161 0.96793 1.01363 1.01538 1.21899 0.91856 0.98416 0.86876 0.90391 1.21199 0.86065 0.97964 0.93469 1.43909 0.98859 1.22668 1.66632 1.20789 0.92964 0.90464 0.93774 1.19081 0.97100 0.89422 1.32766 0.91461 1.24928 0.98650 0.96073 0.99027 1.70081 1.13220 1.21612 1.49704 0.86370 0.79964 0.83369 0.77684 1.21748 1.22064 1.19961 1.45548 1.63367 1.14841 1.07865 1.16667 0.77366 0.85403 0.81896 1.90717 1.53303 1.15013 1.85257 1.21645 1.12985 0.91320 0.96087 1.23284 0.97186 0.96321 0.90434 1.50457 1.45625 1.08945 1.10539 1.22055 1.01552 1.01069 0.74263 1.22883 1.01280 0.96054 0.95287 0.88961 1.23198 1.03411 0.98529 0.93372 1.23576 0.97866 0.90359 0.91320 1.88923 1.62412 1.63533 1.14729 1.23359 0.99917 0.91372 0.87928 1.81901 1.22578 1.04489 0.96361 1.74716 1.07145 1.13503 1.10748 0.92948 0.92933 0.92172 0.93257 0.92885 0.95459 0.93717 0.98642 0.94017 0.75054 0.78269 0.88100 0.87472 0.89778 0.89539 0.92139 0.88761 0.91864 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.48 37.16 0.35 -2.10 16 2 C 0.12 2.25 2.88 -67.93 -0.20 2.06 16 3 H 0.08 1.69 7.58 -51.93 -0.39 1.29 16 4 C 0.14 2.80 5.36 -4.04 -0.02 2.78 16 5 N -0.60 -14.67 2.82 -181.12 -0.51 -15.18 16 6 C 0.16 4.10 9.01 59.85 0.54 4.64 16 7 C -0.25 -6.76 8.02 -15.06 -0.12 -6.88 16 8 H 0.07 1.76 7.84 -52.48 -0.41 1.35 16 9 C 0.01 0.34 5.13 -17.43 -0.09 0.25 16 10 N -0.90 -26.45 10.58 55.49 0.59 -25.86 16 11 Si 0.90 22.59 29.57 -169.99 -5.03 17.57 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 14 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 15 N -0.67 -13.79 4.48 -54.86 -0.25 -14.04 16 16 C 0.60 12.54 7.78 -12.48 -0.10 12.44 16 17 O -0.56 -12.47 16.53 5.28 0.09 -12.38 16 18 C -0.08 -1.51 6.99 -83.55 -0.58 -2.09 16 19 C 0.08 1.20 11.27 -16.83 -0.19 1.01 16 20 N -0.37 -4.80 3.69 -61.06 -0.23 -5.03 16 21 C 0.13 1.07 5.70 -4.04 -0.02 1.05 16 22 C -0.14 -1.05 3.27 -89.09 -0.29 -1.34 16 23 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 24 C -0.15 -0.80 6.73 -24.60 -0.17 -0.96 16 25 C 0.05 0.32 7.72 38.33 0.30 0.62 16 26 O -0.38 -4.23 11.52 -35.23 -0.41 -4.64 16 27 C 0.05 0.55 6.60 37.73 0.25 0.80 16 28 N -0.07 -1.24 11.63 60.35 0.70 -0.54 16 29 N -0.19 -3.67 12.04 32.85 0.40 -3.28 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.93 8.03 -51.93 -0.42 0.51 16 34 H 0.05 0.94 7.86 -51.93 -0.41 0.54 16 35 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 36 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 37 H 0.00 -0.11 7.84 -51.93 -0.41 -0.52 16 38 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.41 8.85 7.08 -40.82 -0.29 8.57 16 40 H 0.20 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.11 0.52 8.08 -51.93 -0.42 0.10 16 43 H 0.08 0.39 7.87 -51.93 -0.41 -0.02 16 44 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.10 1.30 6.38 -51.93 -0.33 0.97 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -34.40 392.96 -6.67 -41.07 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.61 Total: 4.12 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -0.34 Total: 12.25 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: 0.70 Total: -63.92 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.32 Total: -17.01 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.40 -6.67 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275689430.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.196 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds