Wall clock time and date at job start Tue Mar 31 2020 19:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47351 * 2 1 4 4 C 1.53003 * 109.46907 * 240.00033 * 2 1 3 5 5 N 1.46500 * 109.47034 * 184.99815 * 4 2 1 6 6 C 1.46504 * 120.00121 * 269.99970 * 5 4 2 7 7 C 1.36933 * 119.99690 * 90.00347 * 5 4 2 8 8 H 1.08005 * 120.00418 * 22.34193 * 7 5 4 9 9 C 1.38817 * 120.00139 * 202.33917 * 7 5 4 10 10 N 1.31615 * 119.99429 * 11.36054 * 9 7 5 11 11 Si 1.86794 * 120.00275 * 191.35362 * 9 7 5 12 12 H 1.48499 * 109.47145 * 90.00097 * 11 9 7 13 13 H 1.48497 * 109.47327 * 210.00315 * 11 9 7 14 14 H 1.48505 * 109.47231 * 330.00343 * 11 9 7 15 15 N 1.46498 * 109.47213 * 120.00189 * 2 1 3 16 16 C 1.34772 * 120.00347 * 274.99623 * 15 2 1 17 17 O 1.21592 * 119.99800 * 0.02562 * 16 15 2 18 18 C 1.47524 * 120.00159 * 179.97438 * 16 15 2 19 19 C 1.36596 * 125.76801 * 179.71797 * 18 16 15 20 20 N 1.34818 * 106.83750 * 179.89664 * 19 18 16 21 21 C 1.46498 * 126.59509 * 180.14799 * 20 19 18 22 22 C 1.53001 * 109.47222 * 125.27587 * 21 20 19 23 23 H 1.09007 * 110.43555 * 305.70260 * 22 21 20 24 24 C 1.54804 * 110.48951 * 183.15517 * 22 21 20 25 25 C 1.55221 * 101.98848 * 220.51957 * 24 22 21 26 26 O 1.44375 * 103.56739 * 36.88313 * 25 24 22 27 27 C 1.43747 * 106.97427 * 320.01240 * 26 25 24 28 28 N 1.40209 * 106.81032 * 0.36194 * 20 19 18 29 29 N 1.28763 * 108.36866 * 359.76941 * 28 20 19 30 30 H 1.09002 * 109.46987 * 299.99557 * 1 2 3 31 31 H 1.09004 * 109.47469 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47272 * 59.99550 * 1 2 3 33 33 H 1.08996 * 109.47481 * 305.00524 * 4 2 1 34 34 H 1.09001 * 109.46862 * 65.00344 * 4 2 1 35 35 H 1.09001 * 109.46714 * 94.23062 * 6 5 4 36 36 H 1.08998 * 109.46919 * 214.22481 * 6 5 4 37 37 H 1.08993 * 109.47151 * 334.22738 * 6 5 4 38 38 H 0.97011 * 119.99978 * 179.97438 * 10 9 7 39 39 H 0.97008 * 119.99684 * 95.00221 * 15 2 1 40 40 H 1.07997 * 126.58249 * 0.04043 * 19 18 16 41 41 H 1.08998 * 109.47311 * 245.27519 * 21 20 19 42 42 H 1.09004 * 109.47347 * 5.27368 * 21 20 19 43 43 H 1.08996 * 110.90803 * 338.64261 * 24 22 21 44 44 H 1.09001 * 110.90682 * 102.24183 * 24 22 21 45 45 H 1.09004 * 110.51736 * 278.38403 * 25 24 22 46 46 H 1.09005 * 110.77885 * 155.50188 * 25 24 22 47 47 H 1.09003 * 109.87741 * 267.08765 * 27 26 25 48 48 H 1.08992 * 110.00533 * 146.01079 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.3343 0.2341 -1.7614 7 6 4.0848 -1.9159 -0.6025 8 1 3.5337 -2.8400 -0.5089 9 6 5.3862 -1.8327 -0.1265 10 7 5.9793 -0.6614 -0.0339 11 14 6.2954 -3.3829 0.3828 12 1 7.0228 -3.9371 -0.7872 13 1 7.2648 -3.0571 1.4595 14 1 5.3213 -4.3871 0.8810 15 7 2.0183 -0.6906 1.1961 16 6 2.1471 -0.0184 2.3571 17 8 1.8576 1.1613 2.4119 18 6 2.6384 -0.7140 3.5617 19 6 2.8186 -0.1491 4.7922 20 7 3.2748 -1.1225 5.6058 21 6 3.6092 -0.9886 7.0258 22 6 2.8281 -2.0268 7.8338 23 1 1.7608 -1.9444 7.6285 24 6 3.1036 -1.8546 9.3474 25 6 3.2158 -3.3274 9.8243 26 8 3.8816 -3.9889 8.7273 27 6 3.3308 -3.4481 7.5146 28 7 3.3725 -2.2865 4.8303 29 7 2.9898 -2.0093 3.6325 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 -0.8899 33 1 1.6053 -1.7197 -1.2953 34 1 1.7516 -0.1582 -2.1370 35 1 4.6022 0.9455 -0.9803 36 1 5.2403 -0.2028 -2.1813 37 1 3.7810 0.7484 -2.5471 38 1 6.8886 -0.6031 0.2991 39 1 2.2490 -1.6319 1.1525 40 1 2.6295 0.8793 5.0623 41 1 4.6783 -1.1498 7.1641 42 1 3.3454 0.0120 7.3684 43 1 4.0386 -1.3198 9.5142 44 1 2.2736 -1.3466 9.8385 45 1 2.2254 -3.7533 9.9853 46 1 3.8138 -3.3952 10.7332 47 1 2.5002 -4.0677 7.1762 48 1 4.0992 -3.4049 6.7429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275689430.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:22 Heat of formation + Delta-G solvation = 15.918794 kcal Electronic energy + Delta-G solvation = -30135.478934 eV Core-core repulsion = 26034.696764 eV Total energy + Delta-G solvation = -4100.782171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.20862 -40.56769 -40.28347 -37.97360 -36.30257 -35.68102 -33.41556 -33.11695 -32.20902 -31.22979 -30.20261 -28.00723 -27.61151 -27.34120 -25.03649 -23.92166 -23.42439 -22.91384 -22.00104 -21.56511 -21.05325 -19.19247 -18.56040 -17.61574 -17.35876 -17.16510 -17.06553 -16.70017 -16.66872 -16.01449 -15.78417 -15.63108 -15.42664 -15.21051 -14.84932 -14.59959 -14.42729 -14.14869 -13.84561 -13.75515 -13.32791 -13.14085 -13.07538 -12.85955 -12.73765 -12.69802 -12.54134 -12.43759 -12.35940 -12.12236 -11.98160 -11.94673 -11.94241 -11.82090 -11.66057 -11.27680 -11.02234 -10.69936 -10.58609 -10.33002 -9.75612 -8.73373 -7.77973 -5.22580 0.17437 0.73492 1.10578 1.42036 1.46114 1.51685 2.29363 2.52010 2.53802 2.94453 3.25703 3.27587 3.38985 3.39831 3.69043 3.73368 3.84311 3.92626 4.02705 4.14190 4.19958 4.22338 4.30843 4.46404 4.47348 4.50497 4.57703 4.71639 4.77287 4.79554 4.83182 4.88655 4.91699 4.95444 4.97586 5.04762 5.10771 5.21920 5.37866 5.44369 5.46808 5.68548 5.76632 5.78676 5.87744 6.36450 6.67397 7.00666 7.20595 7.36122 7.92867 8.36366 9.25337 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.003402 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.567672 B = 8229.434570 C = 9673.283122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.120 3.880 3 H 0.049 0.951 4 C 0.140 3.860 5 N -0.612 5.612 6 C 0.179 3.821 7 C -0.239 4.239 8 H 0.073 0.927 9 C -0.037 4.037 10 N -0.932 5.932 11 Si 0.943 3.057 12 H -0.287 1.287 13 H -0.309 1.309 14 H -0.268 1.268 15 N -0.675 5.675 16 C 0.597 3.403 17 O -0.585 6.585 18 C -0.119 4.119 19 C 0.107 3.893 20 N -0.351 5.351 21 C 0.120 3.880 22 C -0.128 4.128 23 H 0.096 0.904 24 C -0.133 4.133 25 C 0.034 3.966 26 O -0.406 6.406 27 C 0.049 3.951 28 N -0.092 5.092 29 N -0.225 5.225 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.080 0.920 35 H -0.007 1.007 36 H 0.018 0.982 37 H 0.031 0.969 38 H 0.240 0.760 39 H 0.407 0.593 40 H 0.239 0.761 41 H 0.106 0.894 42 H 0.154 0.846 43 H 0.097 0.903 44 H 0.114 0.886 45 H 0.066 0.934 46 H 0.110 0.890 47 H 0.049 0.951 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.801 1.520 18.696 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 H 0.068 0.932 4 C 0.013 3.987 5 N -0.334 5.334 6 C 0.034 3.966 7 C -0.369 4.369 8 H 0.091 0.909 9 C -0.232 4.232 10 N -0.579 5.579 11 Si 0.773 3.227 12 H -0.214 1.214 13 H -0.237 1.237 14 H -0.193 1.193 15 N -0.322 5.322 16 C 0.382 3.618 17 O -0.467 6.467 18 C -0.259 4.259 19 C -0.050 4.050 20 N -0.136 5.136 21 C 0.001 3.999 22 C -0.147 4.147 23 H 0.114 0.886 24 C -0.171 4.171 25 C -0.042 4.042 26 O -0.326 6.326 27 C -0.028 4.028 28 N -0.072 5.072 29 N -0.098 5.098 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.012 0.988 36 H 0.037 0.963 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.243 0.757 40 H 0.255 0.745 41 H 0.124 0.876 42 H 0.172 0.828 43 H 0.116 0.884 44 H 0.132 0.868 45 H 0.084 0.916 46 H 0.128 0.872 47 H 0.067 0.933 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.292 0.692 18.769 21.416 hybrid contribution 0.945 -0.091 0.171 0.965 sum -9.346 0.602 18.939 21.128 Atomic orbital electron populations 1.22031 0.93427 1.02553 1.02450 1.21825 0.94377 0.96407 0.86148 0.93237 1.21419 0.83166 0.99359 0.94761 1.44124 1.00963 1.21988 1.66356 1.20507 0.92740 0.89870 0.93477 1.19323 0.96780 0.90219 1.30583 0.90920 1.25441 0.99771 0.97677 1.00344 1.70238 1.12883 1.22997 1.51808 0.85611 0.78825 0.81364 0.76863 1.21378 1.23722 1.19304 1.45669 1.63551 1.14542 1.08467 1.16988 0.76925 0.85301 0.82559 1.90680 1.54463 1.15732 1.85783 1.21637 1.15571 0.91747 0.96973 1.23777 0.94759 0.97530 0.88962 1.50770 1.43482 1.07466 1.11868 1.22635 1.02082 1.03751 0.71394 1.22832 1.01159 0.93736 0.97007 0.88594 1.23197 1.05229 0.97565 0.91090 1.23873 0.98228 0.91358 0.90717 1.88891 1.63271 1.64657 1.15773 1.23264 0.98536 0.93428 0.87606 1.81819 1.22997 1.06272 0.96149 1.74676 1.08497 1.14432 1.12196 0.93729 0.91557 0.89544 0.91837 0.90158 0.98819 0.96325 0.95060 0.95088 0.75748 0.74522 0.87615 0.82795 0.88442 0.86807 0.91580 0.87212 0.93314 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.17 9.48 71.98 0.68 -3.49 16 2 C 0.12 4.49 2.88 44.99 0.13 4.62 16 3 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 4 C 0.14 5.27 5.36 86.38 0.46 5.73 16 5 N -0.61 -29.72 2.82 -726.93 -2.05 -31.77 16 6 C 0.18 8.95 9.01 127.77 1.15 10.10 16 7 C -0.24 -12.70 8.02 84.04 0.67 -12.03 16 8 H 0.07 3.75 7.84 -2.91 -0.02 3.73 16 9 C -0.04 -2.09 5.13 84.86 0.44 -1.66 16 10 N -0.93 -56.36 10.58 21.65 0.23 -56.13 16 11 Si 0.94 47.44 29.57 68.60 2.03 49.47 16 12 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 13 H -0.31 -16.25 7.11 99.48 0.71 -15.54 16 14 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 15 N -0.68 -28.03 4.48 -445.73 -2.00 -30.03 16 16 C 0.60 25.09 7.78 86.69 0.67 25.76 16 17 O -0.59 -25.98 16.53 -4.01 -0.07 -26.04 16 18 C -0.12 -4.46 6.99 40.82 0.29 -4.17 16 19 C 0.11 2.88 11.27 83.85 0.95 3.83 16 20 N -0.35 -8.56 3.69 -347.10 -1.28 -9.84 16 21 C 0.12 1.59 5.70 86.38 0.49 2.08 16 22 C -0.13 -1.69 3.27 -9.81 -0.03 -1.72 16 23 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 24 C -0.13 -0.97 6.73 31.97 0.22 -0.75 16 25 C 0.03 0.41 7.72 72.74 0.56 0.98 16 26 O -0.41 -8.98 11.52 -148.98 -1.72 -10.70 16 27 C 0.05 1.05 6.60 72.35 0.48 1.52 16 28 N -0.09 -3.16 11.63 37.02 0.43 -2.73 16 29 N -0.23 -9.00 12.04 -49.99 -0.60 -9.60 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 2.24 8.03 -2.39 -0.02 2.22 16 34 H 0.08 2.61 7.86 -2.39 -0.02 2.59 16 35 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 36 H 0.02 0.99 7.19 -2.39 -0.02 0.97 16 37 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 38 H 0.24 14.46 8.31 -92.70 -0.77 13.69 16 39 H 0.41 17.68 7.08 -92.70 -0.66 17.03 16 40 H 0.24 4.34 8.06 -2.91 -0.02 4.31 16 41 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.15 0.69 8.08 -2.39 -0.02 0.67 16 43 H 0.10 0.50 7.87 -2.39 -0.02 0.48 16 44 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.08 2.03 6.38 -2.39 -0.02 2.01 16 Total: -1.00 -78.88 392.96 2.44 -76.44 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.31 Total: 20.11 kcal Atomic # 6 Polarization: 23.65 SS G_CDS: 7.16 Total: 30.81 kcal Atomic # 7 Polarization: -134.82 SS G_CDS: -5.27 Total: -140.09 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.78 Total: -36.74 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -78.88 2.44 -76.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275689430.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.360 kcal (2) G-P(sol) polarization free energy of solvation -78.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds