Wall clock time and date at job start Tue Mar 31 2020 19:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46882 * 2 1 4 4 C 1.53000 * 109.46919 * 119.99196 * 2 1 3 5 5 N 1.46503 * 109.47029 * 174.99903 * 4 2 1 6 6 C 1.46497 * 119.99467 * 90.00246 * 5 4 2 7 7 C 1.36933 * 120.00299 * 270.00450 * 5 4 2 8 8 H 1.08000 * 119.99993 * 22.00951 * 7 5 4 9 9 C 1.38807 * 120.00061 * 202.00812 * 7 5 4 10 10 N 1.31623 * 120.00095 * 14.21800 * 9 7 5 11 11 Si 1.86808 * 120.00074 * 194.21779 * 9 7 5 12 12 H 1.48499 * 109.47166 * 60.00171 * 11 9 7 13 13 H 1.48501 * 109.47137 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46728 * 300.00017 * 11 9 7 15 15 N 1.46493 * 109.47400 * 239.99679 * 2 1 3 16 16 C 1.34781 * 120.00325 * 84.99862 * 15 2 1 17 17 O 1.21594 * 119.99676 * 359.97438 * 16 15 2 18 18 C 1.47516 * 120.00288 * 180.02562 * 16 15 2 19 19 C 1.36596 * 125.77350 * 179.97438 * 18 16 15 20 20 N 1.34806 * 106.84382 * 179.75895 * 19 18 16 21 21 C 1.46498 * 126.59795 * 180.27630 * 20 19 18 22 22 C 1.53001 * 109.47357 * 125.00266 * 21 20 19 23 23 H 1.09003 * 110.45413 * 52.39329 * 22 21 20 24 24 C 1.54506 * 110.51441 * 175.00359 * 22 21 20 25 25 C 1.54484 * 104.06345 * 118.64685 * 24 22 21 26 26 O 1.44426 * 104.80164 * 23.97737 * 25 24 22 27 27 C 1.44416 * 105.27753 * 319.48977 * 26 25 24 28 28 N 1.40209 * 106.81306 * 0.24438 * 20 19 18 29 29 N 1.28768 * 108.36528 * 359.97438 * 28 20 19 30 30 H 1.09002 * 109.47328 * 60.00328 * 1 2 3 31 31 H 1.08997 * 109.47249 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47507 * 300.00338 * 1 2 3 33 33 H 1.08993 * 109.47670 * 295.00233 * 4 2 1 34 34 H 1.09005 * 109.46779 * 55.00416 * 4 2 1 35 35 H 1.09000 * 109.47015 * 95.14444 * 6 5 4 36 36 H 1.09000 * 109.46877 * 215.14089 * 6 5 4 37 37 H 1.08996 * 109.47905 * 335.14477 * 6 5 4 38 38 H 0.96999 * 120.00057 * 179.97438 * 10 9 7 39 39 H 0.97005 * 120.00189 * 265.00165 * 15 2 1 40 40 H 1.08004 * 126.57945 * 0.02938 * 19 18 16 41 41 H 1.08995 * 109.47667 * 245.00057 * 21 20 19 42 42 H 1.09001 * 109.47069 * 5.00490 * 21 20 19 43 43 H 1.09001 * 110.51151 * 237.28956 * 24 22 21 44 44 H 1.09001 * 110.51150 * 359.97438 * 24 22 21 45 45 H 1.08996 * 110.37180 * 142.80877 * 25 24 22 46 46 H 1.08993 * 110.36794 * 265.14819 * 25 24 22 47 47 H 1.09008 * 110.37550 * 281.68264 * 27 26 25 48 48 H 1.08995 * 110.37608 * 159.34714 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.3342 0.2343 1.7613 7 6 4.0850 -1.9157 0.6025 8 1 3.5312 -2.5055 -0.1129 9 6 5.3897 -2.2621 0.9258 10 7 5.9683 -1.7330 1.9831 11 14 6.3243 -3.4791 -0.1395 12 1 6.4261 -2.9495 -1.5231 13 1 7.6869 -3.6788 0.4161 14 1 5.6027 -4.7768 -0.1580 15 7 2.0184 -0.6906 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.8574 1.1613 -2.4119 18 6 2.6384 -0.7140 -3.5617 19 6 2.8130 -0.1506 -4.7937 20 7 3.2787 -1.1215 -5.6047 21 6 3.6199 -0.9858 -7.0230 22 6 5.0598 -1.4516 -7.2480 23 1 5.2071 -2.4484 -6.8322 24 6 5.4045 -1.4369 -8.7541 25 6 6.5688 -0.4275 -8.8629 26 8 7.1665 -0.4106 -7.5482 27 6 6.0567 -0.4493 -6.6250 28 7 3.3747 -2.2860 -4.8297 29 7 2.9871 -2.0101 -3.6332 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.7516 -0.1582 2.1370 34 1 1.6053 -1.7197 1.2953 35 1 4.6180 -0.0346 2.7788 36 1 5.2312 0.3571 1.1544 37 1 3.7741 1.1692 1.7754 38 1 6.8799 -1.9754 2.2092 39 1 2.2491 -1.6318 -1.1525 40 1 2.6195 0.8768 -5.0649 41 1 2.9429 -1.5971 -7.6197 42 1 3.5250 0.0583 -7.3212 43 1 5.7245 -2.4258 -9.0823 44 1 4.5489 -1.0982 -9.3384 45 1 7.2934 -0.7625 -9.6049 46 1 6.1904 0.5617 -9.1204 47 1 5.5997 0.5366 -6.5393 48 1 6.3878 -0.8011 -5.6480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275689431.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:26 Heat of formation + Delta-G solvation = 40.095185 kcal Electronic energy + Delta-G solvation = -30001.196290 eV Core-core repulsion = 25901.462486 eV Total energy + Delta-G solvation = -4099.733804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.15180 -39.87668 -38.99976 -36.30720 -35.49082 -33.98223 -32.57956 -31.48897 -30.76256 -30.04359 -29.47178 -26.79592 -26.13274 -25.53591 -23.77131 -23.46107 -22.20858 -21.69387 -21.05989 -20.18651 -19.70423 -18.16433 -17.00458 -16.56174 -16.40642 -15.89670 -15.83553 -15.67317 -15.50670 -14.95610 -14.62415 -14.52312 -14.00300 -13.76909 -13.63924 -13.43273 -13.09214 -12.92365 -12.86953 -12.31721 -12.13461 -12.05510 -11.91205 -11.86212 -11.60407 -11.55744 -11.24751 -11.05538 -10.98099 -10.77271 -10.71915 -10.35413 -10.34893 -10.26316 -10.20232 -9.94594 -9.79272 -9.60545 -9.19091 -8.48061 -8.37017 -6.68569 -5.65921 -3.11444 1.17059 1.93740 1.96802 3.46653 3.48179 3.50849 3.56075 3.61868 3.75408 3.91886 4.01647 4.28670 4.35670 4.41524 4.56486 4.57274 4.74123 4.84313 4.86730 4.88846 5.10219 5.15335 5.27299 5.37107 5.39777 5.42185 5.49359 5.54049 5.63837 5.66029 5.82801 5.95990 6.00010 6.19901 6.25397 6.30279 6.36088 6.49170 6.52277 6.80956 6.88110 7.13981 7.44245 7.77053 7.84513 7.96313 8.24565 8.44304 8.73586 9.29335 9.92797 10.41477 11.38561 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.003601 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.786861 B = 7773.018794 C = 9471.891531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.079 0.921 4 C 0.141 3.859 5 N -0.598 5.598 6 C 0.163 3.837 7 C -0.249 4.249 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.906 5.906 11 Si 0.898 3.102 12 H -0.284 1.284 13 H -0.293 1.293 14 H -0.281 1.281 15 N -0.677 5.677 16 C 0.600 3.400 17 O -0.559 6.559 18 C -0.087 4.087 19 C 0.084 3.916 20 N -0.368 5.368 21 C 0.134 3.866 22 C -0.139 4.139 23 H 0.105 0.895 24 C -0.146 4.146 25 C 0.042 3.958 26 O -0.370 6.370 27 C 0.049 3.951 28 N -0.066 5.066 29 N -0.193 5.193 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.031 0.969 36 H 0.039 0.961 37 H -0.003 1.003 38 H 0.252 0.748 39 H 0.411 0.589 40 H 0.202 0.798 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.728 3.817 -21.120 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.097 0.903 4 C 0.012 3.988 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.379 4.379 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.551 5.551 11 Si 0.728 3.272 12 H -0.210 1.210 13 H -0.219 1.219 14 H -0.208 1.208 15 N -0.326 5.326 16 C 0.384 3.616 17 O -0.438 6.438 18 C -0.226 4.226 19 C -0.072 4.072 20 N -0.154 5.154 21 C 0.012 3.988 22 C -0.158 4.158 23 H 0.123 0.877 24 C -0.184 4.184 25 C -0.035 4.035 26 O -0.288 6.288 27 C -0.028 4.028 28 N -0.047 5.047 29 N -0.066 5.066 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.016 0.984 38 H 0.062 0.938 39 H 0.249 0.751 40 H 0.218 0.782 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.112 0.888 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.119 3.137 -20.997 22.094 hybrid contribution 0.363 -0.050 -0.810 0.889 sum -5.756 3.087 -21.806 22.763 Atomic orbital electron populations 1.22127 0.96375 1.01580 1.01670 1.21962 0.92322 0.98330 0.86484 0.90288 1.21065 0.86197 0.98364 0.93147 1.43838 0.98843 1.21104 1.68271 1.20776 0.92850 0.86229 0.98269 1.19020 0.96831 1.04969 1.17081 0.91488 1.24926 0.98738 0.98901 0.96706 1.70067 1.13692 1.46495 1.24862 0.86430 0.79117 0.81345 0.80314 1.21034 1.21866 1.20769 1.45795 1.63730 1.14885 1.08181 1.16730 0.77528 0.85517 0.81859 1.90737 1.52966 1.14972 1.85150 1.21658 1.13462 0.91404 0.96094 1.23305 0.97235 0.96415 0.90271 1.50483 1.45056 1.08915 1.10919 1.22070 0.96810 1.03959 0.75924 1.22933 0.93337 1.02599 0.96972 0.87673 1.22952 0.99375 1.01575 0.94512 1.23453 0.95218 0.98292 0.86540 1.89197 1.28852 1.95252 1.15531 1.23527 0.87006 0.97739 0.94545 1.81993 1.22003 1.04295 0.96364 1.74731 1.07465 1.13360 1.11070 0.92874 0.92778 0.91966 0.92863 0.92874 0.95100 0.94216 0.98431 0.93822 0.75086 0.78167 0.88016 0.87651 0.89702 0.89891 0.88808 0.92062 0.91986 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.48 37.16 0.35 -1.98 16 2 C 0.12 2.12 2.88 -67.93 -0.20 1.92 16 3 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 4 C 0.14 2.80 5.30 -4.04 -0.02 2.78 16 5 N -0.60 -14.82 2.82 -181.12 -0.51 -15.33 16 6 C 0.16 4.10 8.98 59.85 0.54 4.64 16 7 C -0.25 -6.73 8.85 -15.06 -0.13 -6.86 16 8 H 0.07 1.75 6.23 -52.49 -0.33 1.42 16 9 C 0.01 0.16 5.08 -17.43 -0.09 0.07 16 10 N -0.91 -26.77 10.72 55.49 0.59 -26.17 16 11 Si 0.90 22.73 29.58 -169.99 -5.03 17.70 16 12 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 N -0.68 -12.94 4.48 -54.86 -0.25 -13.19 16 16 C 0.60 11.33 7.78 -12.48 -0.10 11.23 16 17 O -0.56 -11.28 16.53 5.28 0.09 -11.20 16 18 C -0.09 -1.46 6.99 -83.55 -0.58 -2.04 16 19 C 0.08 1.05 11.27 -16.84 -0.19 0.86 16 20 N -0.37 -4.19 3.58 -61.06 -0.22 -4.41 16 21 C 0.13 0.88 5.69 -4.04 -0.02 0.85 16 22 C -0.14 -1.08 3.24 -89.05 -0.29 -1.37 16 23 H 0.10 1.02 8.06 -51.93 -0.42 0.61 16 24 C -0.15 -0.77 6.74 -25.16 -0.17 -0.94 16 25 C 0.04 0.28 7.63 37.94 0.29 0.57 16 26 O -0.37 -4.10 11.65 -35.23 -0.41 -4.51 16 27 C 0.05 0.49 7.08 37.94 0.27 0.76 16 28 N -0.07 -1.04 13.57 60.35 0.82 -0.22 16 29 N -0.19 -3.47 12.04 32.85 0.40 -3.08 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.98 8.07 -51.93 -0.42 0.56 16 34 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 35 H 0.03 0.83 7.36 -51.93 -0.38 0.45 16 36 H 0.04 1.08 7.31 -51.93 -0.38 0.70 16 37 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 38 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.41 8.20 6.19 -40.82 -0.25 7.95 16 40 H 0.20 1.81 8.06 -52.48 -0.42 1.39 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.11 0.40 7.90 -51.93 -0.41 -0.01 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.24 7.73 -51.93 -0.40 -0.16 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.54 7.74 -51.92 -0.40 0.14 16 48 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -34.79 395.02 -6.47 -41.26 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.56 Total: 2.69 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -0.34 Total: 10.49 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: 0.83 Total: -62.39 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.32 Total: -15.70 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.79 -6.47 -41.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275689431.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.356 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds