Wall clock time and date at job start Tue Mar 31 2020 19:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46882 * 2 1 4 4 C 1.53000 * 109.46919 * 119.99196 * 2 1 3 5 5 N 1.46503 * 109.47029 * 174.99903 * 4 2 1 6 6 C 1.46497 * 119.99467 * 90.00246 * 5 4 2 7 7 C 1.36933 * 120.00299 * 270.00450 * 5 4 2 8 8 H 1.08000 * 119.99993 * 22.00951 * 7 5 4 9 9 C 1.38807 * 120.00061 * 202.00812 * 7 5 4 10 10 N 1.31623 * 120.00095 * 14.21800 * 9 7 5 11 11 Si 1.86808 * 120.00074 * 194.21779 * 9 7 5 12 12 H 1.48499 * 109.47166 * 60.00171 * 11 9 7 13 13 H 1.48501 * 109.47137 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.46728 * 300.00017 * 11 9 7 15 15 N 1.46493 * 109.47400 * 239.99679 * 2 1 3 16 16 C 1.34781 * 120.00325 * 84.99862 * 15 2 1 17 17 O 1.21594 * 119.99676 * 359.97438 * 16 15 2 18 18 C 1.47516 * 120.00288 * 180.02562 * 16 15 2 19 19 C 1.36596 * 125.77350 * 179.97438 * 18 16 15 20 20 N 1.34806 * 106.84382 * 179.75895 * 19 18 16 21 21 C 1.46498 * 126.59795 * 180.27630 * 20 19 18 22 22 C 1.53001 * 109.47357 * 125.00266 * 21 20 19 23 23 H 1.09003 * 110.45413 * 52.39329 * 22 21 20 24 24 C 1.54506 * 110.51441 * 175.00359 * 22 21 20 25 25 C 1.54484 * 104.06345 * 118.64685 * 24 22 21 26 26 O 1.44426 * 104.80164 * 23.97737 * 25 24 22 27 27 C 1.44416 * 105.27753 * 319.48977 * 26 25 24 28 28 N 1.40209 * 106.81306 * 0.24438 * 20 19 18 29 29 N 1.28768 * 108.36528 * 359.97438 * 28 20 19 30 30 H 1.09002 * 109.47328 * 60.00328 * 1 2 3 31 31 H 1.08997 * 109.47249 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47507 * 300.00338 * 1 2 3 33 33 H 1.08993 * 109.47670 * 295.00233 * 4 2 1 34 34 H 1.09005 * 109.46779 * 55.00416 * 4 2 1 35 35 H 1.09000 * 109.47015 * 95.14444 * 6 5 4 36 36 H 1.09000 * 109.46877 * 215.14089 * 6 5 4 37 37 H 1.08996 * 109.47905 * 335.14477 * 6 5 4 38 38 H 0.96999 * 120.00057 * 179.97438 * 10 9 7 39 39 H 0.97005 * 120.00189 * 265.00165 * 15 2 1 40 40 H 1.08004 * 126.57945 * 0.02938 * 19 18 16 41 41 H 1.08995 * 109.47667 * 245.00057 * 21 20 19 42 42 H 1.09001 * 109.47069 * 5.00490 * 21 20 19 43 43 H 1.09001 * 110.51151 * 237.28956 * 24 22 21 44 44 H 1.09001 * 110.51150 * 359.97438 * 24 22 21 45 45 H 1.08996 * 110.37180 * 142.80877 * 25 24 22 46 46 H 1.08993 * 110.36794 * 265.14819 * 25 24 22 47 47 H 1.09008 * 110.37550 * 281.68264 * 27 26 25 48 48 H 1.08995 * 110.37608 * 159.34714 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1907 6 6 4.3342 0.2343 1.7613 7 6 4.0850 -1.9157 0.6025 8 1 3.5312 -2.5055 -0.1129 9 6 5.3897 -2.2621 0.9258 10 7 5.9683 -1.7330 1.9831 11 14 6.3243 -3.4791 -0.1395 12 1 6.4261 -2.9495 -1.5231 13 1 7.6869 -3.6788 0.4161 14 1 5.6027 -4.7768 -0.1580 15 7 2.0184 -0.6906 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.8574 1.1613 -2.4119 18 6 2.6384 -0.7140 -3.5617 19 6 2.8130 -0.1506 -4.7937 20 7 3.2787 -1.1215 -5.6047 21 6 3.6199 -0.9858 -7.0230 22 6 5.0598 -1.4516 -7.2480 23 1 5.2071 -2.4484 -6.8322 24 6 5.4045 -1.4369 -8.7541 25 6 6.5688 -0.4275 -8.8629 26 8 7.1665 -0.4106 -7.5482 27 6 6.0567 -0.4493 -6.6250 28 7 3.3747 -2.2860 -4.8297 29 7 2.9871 -2.0101 -3.6332 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.7516 -0.1582 2.1370 34 1 1.6053 -1.7197 1.2953 35 1 4.6180 -0.0346 2.7788 36 1 5.2312 0.3571 1.1544 37 1 3.7741 1.1692 1.7754 38 1 6.8799 -1.9754 2.2092 39 1 2.2491 -1.6318 -1.1525 40 1 2.6195 0.8768 -5.0649 41 1 2.9429 -1.5971 -7.6197 42 1 3.5250 0.0583 -7.3212 43 1 5.7245 -2.4258 -9.0823 44 1 4.5489 -1.0982 -9.3384 45 1 7.2934 -0.7625 -9.6049 46 1 6.1904 0.5617 -9.1204 47 1 5.5997 0.5366 -6.5393 48 1 6.3878 -0.8011 -5.6480 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275689431.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:25 Heat of formation + Delta-G solvation = 14.556620 kcal Electronic energy + Delta-G solvation = -30002.303725 eV Core-core repulsion = 25901.462486 eV Total energy + Delta-G solvation = -4100.841239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.23190 -40.62805 -40.35962 -38.02363 -36.33032 -35.73002 -33.45671 -33.14308 -32.23386 -31.20992 -30.29133 -28.04933 -27.56680 -27.37121 -25.04224 -24.16957 -23.43291 -23.04312 -22.08012 -21.44750 -21.02094 -19.32904 -18.54141 -17.69038 -17.32761 -17.17792 -16.95150 -16.83095 -16.52090 -16.32728 -15.76819 -15.65400 -15.51161 -15.23533 -14.92413 -14.71609 -14.54727 -14.03744 -13.77015 -13.72166 -13.47550 -13.10468 -13.07815 -12.97626 -12.83844 -12.68586 -12.61005 -12.45426 -12.33020 -12.19856 -12.15011 -12.04671 -11.89478 -11.76485 -11.62764 -11.27471 -11.06822 -10.86847 -10.60516 -10.35659 -9.84080 -8.74056 -7.80778 -5.25934 0.16136 0.69000 1.10362 1.41245 1.44121 1.50398 2.26413 2.42677 2.49788 2.87659 3.23532 3.25948 3.33377 3.46140 3.70186 3.71370 3.76684 3.92643 3.99188 4.04398 4.15180 4.16519 4.29061 4.36417 4.44282 4.50785 4.54129 4.63716 4.70400 4.78888 4.79635 4.86442 4.87085 4.91410 4.99074 5.03124 5.09633 5.19145 5.31931 5.46243 5.46838 5.63010 5.69990 5.74326 5.75079 6.33704 6.60333 6.96228 7.16546 7.29345 7.89406 8.33102 9.22355 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.003601 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.786861 B = 7773.018794 C = 9471.891531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.123 3.877 3 H 0.061 0.939 4 C 0.140 3.860 5 N -0.613 5.613 6 C 0.178 3.822 7 C -0.238 4.238 8 H 0.074 0.926 9 C -0.048 4.048 10 N -0.937 5.937 11 Si 0.949 3.051 12 H -0.294 1.294 13 H -0.297 1.297 14 H -0.272 1.272 15 N -0.685 5.685 16 C 0.598 3.402 17 O -0.578 6.578 18 C -0.123 4.123 19 C 0.109 3.891 20 N -0.349 5.349 21 C 0.124 3.876 22 C -0.134 4.134 23 H 0.077 0.923 24 C -0.134 4.134 25 C 0.033 3.967 26 O -0.406 6.406 27 C 0.045 3.955 28 N -0.090 5.090 29 N -0.230 5.230 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.009 0.991 36 H 0.007 0.993 37 H 0.027 0.973 38 H 0.245 0.755 39 H 0.406 0.594 40 H 0.241 0.759 41 H 0.131 0.869 42 H 0.148 0.852 43 H 0.084 0.916 44 H 0.119 0.881 45 H 0.102 0.898 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.798 4.655 -23.941 25.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 H 0.079 0.921 4 C 0.013 3.987 5 N -0.335 5.335 6 C 0.033 3.967 7 C -0.368 4.368 8 H 0.091 0.909 9 C -0.243 4.243 10 N -0.584 5.584 11 Si 0.779 3.221 12 H -0.222 1.222 13 H -0.223 1.223 14 H -0.198 1.198 15 N -0.334 5.334 16 C 0.383 3.617 17 O -0.458 6.458 18 C -0.263 4.263 19 C -0.049 4.049 20 N -0.134 5.134 21 C 0.005 3.995 22 C -0.154 4.154 23 H 0.096 0.904 24 C -0.172 4.172 25 C -0.043 4.043 26 O -0.325 6.325 27 C -0.032 4.032 28 N -0.070 5.070 29 N -0.103 5.103 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.027 0.973 36 H 0.025 0.975 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.242 0.758 40 H 0.257 0.743 41 H 0.149 0.851 42 H 0.166 0.834 43 H 0.103 0.897 44 H 0.137 0.863 45 H 0.120 0.880 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.223 3.948 -23.856 25.540 hybrid contribution 0.990 -0.240 -0.069 1.021 sum -7.234 3.708 -23.925 25.268 Atomic orbital electron populations 1.22017 0.93301 1.02570 1.02634 1.21804 0.94579 0.96652 0.85372 0.92119 1.21278 0.83197 0.99345 0.94858 1.44049 1.00979 1.20412 1.68082 1.20503 0.92286 0.87676 0.96274 1.19329 0.96724 1.04639 1.16129 0.90877 1.25503 0.99893 1.00968 0.97901 1.70197 1.13509 1.48315 1.26404 0.85613 0.78012 0.80213 0.78278 1.22174 1.22310 1.19779 1.45888 1.64109 1.14610 1.08759 1.16993 0.76991 0.85381 0.82339 1.90705 1.53956 1.15575 1.85604 1.21632 1.15986 0.91740 0.96958 1.23810 0.94719 0.97583 0.88738 1.50788 1.42932 1.07409 1.12232 1.22671 0.96231 1.07278 0.73283 1.22830 0.93574 1.00425 0.98569 0.90402 1.22934 1.00092 1.01456 0.92689 1.23747 0.95952 0.99902 0.84692 1.89157 1.30239 1.95525 1.17620 1.23512 0.87481 0.99082 0.93134 1.81879 1.22640 1.06229 0.96289 1.74690 1.08774 1.14414 1.12456 0.93205 0.91764 0.89666 0.90830 0.92296 0.97266 0.97455 0.95405 0.94588 0.75765 0.74333 0.85138 0.83404 0.89685 0.86253 0.87998 0.90082 0.90342 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.48 71.98 0.68 -3.30 16 2 C 0.12 4.33 2.88 44.99 0.13 4.46 16 3 H 0.06 2.38 7.58 -2.38 -0.02 2.36 16 4 C 0.14 5.39 5.30 86.38 0.46 5.84 16 5 N -0.61 -30.37 2.82 -726.95 -2.05 -32.42 16 6 C 0.18 9.03 8.98 127.77 1.15 10.18 16 7 C -0.24 -12.94 8.85 84.03 0.74 -12.20 16 8 H 0.07 3.85 6.23 -2.91 -0.02 3.83 16 9 C -0.05 -2.75 5.08 84.86 0.43 -2.32 16 10 N -0.94 -56.88 10.72 21.65 0.23 -56.65 16 11 Si 0.95 48.12 29.58 68.60 2.03 50.15 16 12 H -0.29 -15.28 7.11 99.48 0.71 -14.58 16 13 H -0.30 -15.11 7.11 99.48 0.71 -14.41 16 14 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 15 N -0.69 -26.06 4.48 -445.72 -2.00 -28.06 16 16 C 0.60 22.38 7.78 86.69 0.67 23.06 16 17 O -0.58 -22.84 16.53 -4.01 -0.07 -22.91 16 18 C -0.12 -4.07 6.99 40.81 0.29 -3.78 16 19 C 0.11 2.47 11.27 83.85 0.95 3.42 16 20 N -0.35 -7.15 3.58 -347.11 -1.24 -8.40 16 21 C 0.12 1.14 5.69 86.38 0.49 1.63 16 22 C -0.13 -1.82 3.24 -9.78 -0.03 -1.85 16 23 H 0.08 1.50 8.06 -2.39 -0.02 1.48 16 24 C -0.13 -0.97 6.74 31.61 0.21 -0.75 16 25 C 0.03 0.36 7.63 72.49 0.55 0.91 16 26 O -0.41 -8.79 11.65 -148.98 -1.74 -10.53 16 27 C 0.04 0.87 7.08 72.49 0.51 1.39 16 28 N -0.09 -2.79 13.57 37.02 0.50 -2.28 16 29 N -0.23 -8.36 12.04 -50.00 -0.60 -8.97 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 34 H 0.06 2.21 8.04 -2.38 -0.02 2.19 16 35 H 0.01 0.50 7.36 -2.39 -0.02 0.48 16 36 H 0.01 0.38 7.31 -2.39 -0.02 0.36 16 37 H 0.03 1.21 8.03 -2.39 -0.02 1.19 16 38 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 39 H 0.41 16.30 6.19 -92.70 -0.57 15.73 16 40 H 0.24 3.34 8.06 -2.91 -0.02 3.31 16 41 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.15 0.22 7.90 -2.39 -0.02 0.20 16 43 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.12 0.03 7.73 -2.39 -0.02 0.02 16 45 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.08 1.21 7.74 -2.38 -0.02 1.19 16 48 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -79.81 395.02 2.70 -77.11 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.39 Total: 16.27 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 7.24 Total: 26.67 kcal Atomic # 7 Polarization: -131.61 SS G_CDS: -5.16 Total: -136.77 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.80 Total: -33.43 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Total: -79.81 2.70 -77.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275689431.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.671 kcal (2) G-P(sol) polarization free energy of solvation -79.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds