Wall clock time and date at job start Tue Mar 31 2020 19:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47216 * 2 1 4 4 C 1.52999 * 109.47402 * 120.00416 * 2 1 3 5 5 N 1.46489 * 109.47308 * 175.00150 * 4 2 1 6 6 C 1.46501 * 120.00363 * 90.00173 * 5 4 2 7 7 C 1.36938 * 120.00319 * 269.99720 * 5 4 2 8 8 H 1.08000 * 119.99582 * 22.01159 * 7 5 4 9 9 C 1.38806 * 120.00613 * 202.01150 * 7 5 4 10 10 N 1.31621 * 119.99990 * 14.21670 * 9 7 5 11 11 Si 1.86797 * 120.00228 * 194.21770 * 9 7 5 12 12 H 1.48498 * 109.47216 * 59.99830 * 11 9 7 13 13 H 1.48500 * 109.47263 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47074 * 299.99976 * 11 9 7 15 15 N 1.46509 * 109.47094 * 240.00448 * 2 1 3 16 16 C 1.34774 * 119.99730 * 85.00205 * 15 2 1 17 17 O 1.21593 * 120.00426 * 359.97438 * 16 15 2 18 18 C 1.47529 * 119.99510 * 180.02562 * 16 15 2 19 19 C 1.36598 * 125.76571 * 180.30256 * 18 16 15 20 20 N 1.34815 * 106.83374 * 180.18014 * 19 18 16 21 21 C 1.46504 * 126.59513 * 179.85452 * 20 19 18 22 22 C 1.52991 * 109.47475 * 124.70921 * 21 20 19 23 23 H 1.09011 * 110.80397 * 302.82617 * 22 21 20 24 24 C 1.54814 * 110.94027 * 179.17853 * 22 21 20 25 25 C 1.54099 * 104.18572 * 220.90770 * 24 22 21 26 26 O 1.43885 * 107.37891 * 358.09907 * 25 24 22 27 27 C 1.44378 * 106.89907 * 26.27371 * 26 25 24 28 28 N 1.40209 * 106.81541 * 359.58690 * 20 19 18 29 29 N 1.28768 * 108.36382 * 0.26265 * 28 20 19 30 30 H 1.09000 * 109.47268 * 59.99734 * 1 2 3 31 31 H 1.09003 * 109.47501 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47383 * 299.99579 * 1 2 3 33 33 H 1.09006 * 109.46855 * 295.00154 * 4 2 1 34 34 H 1.08997 * 109.47144 * 54.99564 * 4 2 1 35 35 H 1.08992 * 109.47608 * 95.14004 * 6 5 4 36 36 H 1.09004 * 109.47342 * 215.14531 * 6 5 4 37 37 H 1.09001 * 109.46802 * 335.14160 * 6 5 4 38 38 H 0.97002 * 120.00562 * 180.02562 * 10 9 7 39 39 H 0.96994 * 119.99586 * 264.99740 * 15 2 1 40 40 H 1.07993 * 126.58705 * 0.02938 * 19 18 16 41 41 H 1.09003 * 109.46793 * 4.70772 * 21 20 19 42 42 H 1.08996 * 109.46694 * 244.71311 * 21 20 19 43 43 H 1.09002 * 110.48159 * 339.58275 * 24 22 21 44 44 H 1.09001 * 110.48873 * 102.09318 * 24 22 21 45 45 H 1.09005 * 109.87599 * 117.39313 * 25 24 22 46 46 H 1.08996 * 109.87685 * 238.39174 * 25 24 22 47 47 H 1.08996 * 110.62044 * 201.57737 * 27 26 25 48 48 H 1.09004 * 110.61888 * 78.73819 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4999 -0.8264 1.1905 6 6 4.3343 0.2340 1.7613 7 6 4.0850 -1.9158 0.6022 8 1 3.5312 -2.5055 -0.1134 9 6 5.3897 -2.2623 0.9254 10 7 5.9683 -1.7334 1.9826 11 14 6.3242 -3.4791 -0.1401 12 1 6.4260 -2.9494 -1.5237 13 1 7.6868 -3.6789 0.4154 14 1 5.6026 -4.7768 -0.1588 15 7 2.0183 -0.6906 -1.1963 16 6 2.1470 -0.0181 -2.3571 17 8 1.8574 1.1616 -2.4118 18 6 2.6382 -0.7136 -3.5619 19 6 2.8188 -0.1484 -4.7923 20 7 3.2732 -1.1222 -5.6064 21 6 3.6073 -0.9882 -7.0265 22 6 5.0450 -1.4570 -7.2587 23 1 5.7412 -0.8931 -6.6377 24 6 5.4273 -1.3489 -8.7550 25 6 6.2286 -2.6353 -9.0339 26 8 6.3214 -3.3610 -7.7949 27 6 5.1794 -2.9790 -6.9983 28 7 3.3706 -2.2864 -4.8311 29 7 2.9888 -2.0091 -3.6330 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.7516 -0.1584 2.1370 34 1 1.6054 -1.7198 1.2951 35 1 4.6181 -0.0350 2.7786 36 1 5.2312 0.3570 1.1542 37 1 3.7741 1.1689 1.7755 38 1 6.8802 -1.9751 2.2084 39 1 2.2490 -1.6317 -1.1527 40 1 2.6310 0.8803 -5.0619 41 1 3.5129 0.0559 -7.3250 42 1 2.9259 -1.5985 -7.6191 43 1 4.5321 -1.3148 -9.3759 44 1 6.0445 -0.4673 -8.9284 45 1 5.7102 -3.2410 -9.7772 46 1 7.2254 -2.3803 -9.3936 47 1 5.3661 -3.1728 -5.9421 48 1 4.2853 -3.5059 -7.3318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275689432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:29 Heat of formation + Delta-G solvation = 40.576447 kcal Electronic energy + Delta-G solvation = -29957.923956 eV Core-core repulsion = 25858.211022 eV Total energy + Delta-G solvation = -4099.712935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.15489 -39.77813 -38.99919 -36.30905 -35.49169 -33.98343 -32.57594 -31.49512 -30.80728 -30.08841 -29.37251 -26.82356 -26.13649 -25.53604 -23.84182 -23.10327 -22.17223 -21.65840 -21.14792 -20.31239 -19.73416 -18.16410 -16.98050 -16.62296 -16.30908 -15.95363 -15.71000 -15.66401 -15.34306 -14.93283 -14.58294 -14.51192 -14.16923 -13.73803 -13.65820 -13.48297 -13.07932 -12.87819 -12.85851 -12.33270 -12.11612 -11.98986 -11.90561 -11.84633 -11.55997 -11.54877 -11.22872 -11.05666 -10.98462 -10.77051 -10.71468 -10.38889 -10.34876 -10.26478 -10.00429 -9.94507 -9.79200 -9.60838 -9.19553 -8.48011 -8.37238 -6.68639 -5.65873 -3.11487 1.15993 1.92567 1.95952 3.47321 3.51082 3.51402 3.56851 3.61821 3.76226 3.92309 4.13204 4.13382 4.35385 4.54310 4.57429 4.57934 4.68408 4.84433 4.88286 5.01546 5.09671 5.19213 5.33411 5.34932 5.39611 5.47083 5.54053 5.63004 5.65268 5.71180 5.82962 5.95793 5.99850 6.19756 6.25287 6.30160 6.48969 6.52137 6.52909 6.80697 6.87975 7.13665 7.43958 7.76959 7.84430 7.95675 8.24187 8.44290 8.73318 9.29319 9.92803 10.41400 11.38575 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.003586 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.352019 B = 7805.700682 C = 9786.967358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.079 0.921 4 C 0.141 3.859 5 N -0.598 5.598 6 C 0.163 3.837 7 C -0.250 4.250 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.906 5.906 11 Si 0.898 3.102 12 H -0.284 1.284 13 H -0.293 1.293 14 H -0.281 1.281 15 N -0.676 5.676 16 C 0.600 3.400 17 O -0.559 6.559 18 C -0.087 4.087 19 C 0.087 3.913 20 N -0.369 5.369 21 C 0.135 3.865 22 C -0.140 4.140 23 H 0.096 0.904 24 C -0.146 4.146 25 C 0.045 3.955 26 O -0.376 6.376 27 C 0.057 3.943 28 N -0.069 5.069 29 N -0.191 5.191 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.031 0.969 36 H 0.039 0.961 37 H -0.003 1.003 38 H 0.252 0.748 39 H 0.411 0.589 40 H 0.202 0.798 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 3.659 -21.100 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.097 0.903 4 C 0.012 3.988 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.379 4.379 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.551 5.551 11 Si 0.728 3.272 12 H -0.210 1.210 13 H -0.219 1.219 14 H -0.207 1.207 15 N -0.326 5.326 16 C 0.384 3.616 17 O -0.438 6.438 18 C -0.227 4.227 19 C -0.070 4.070 20 N -0.154 5.154 21 C 0.014 3.986 22 C -0.159 4.159 23 H 0.115 0.885 24 C -0.185 4.185 25 C -0.032 4.032 26 O -0.295 6.295 27 C -0.020 4.020 28 N -0.049 5.049 29 N -0.065 5.065 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.016 0.984 38 H 0.062 0.938 39 H 0.249 0.751 40 H 0.219 0.781 41 H 0.127 0.873 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.124 0.876 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.213 2.815 -20.975 22.057 hybrid contribution 0.463 0.214 -0.852 0.993 sum -5.750 3.028 -21.828 22.775 Atomic orbital electron populations 1.22126 0.96370 1.01586 1.01668 1.21966 0.92326 0.98326 0.86482 0.90296 1.21062 0.86195 0.98367 0.93144 1.43837 0.98845 1.21116 1.68261 1.20776 0.92844 0.86231 0.98269 1.19022 0.96837 1.04975 1.17080 0.91477 1.24926 0.98744 0.98903 0.96705 1.70068 1.13672 1.46523 1.24869 0.86431 0.79115 0.81356 0.80310 1.21015 1.21869 1.20734 1.45795 1.63719 1.14890 1.08177 1.16729 0.77532 0.85511 0.81853 1.90736 1.52989 1.14973 1.85146 1.21663 1.13453 0.91378 0.96179 1.23313 0.97088 0.96351 0.90212 1.50476 1.45423 1.08793 1.10755 1.21949 0.96647 1.04225 0.75823 1.23087 0.95690 0.99337 0.97795 0.88522 1.22934 1.01266 0.99675 0.94577 1.23164 1.00775 0.91386 0.87834 1.88971 1.45705 1.66360 1.28429 1.23688 0.89277 0.91335 0.97697 1.81953 1.22220 1.04426 0.96312 1.74723 1.07326 1.13390 1.11058 0.92874 0.92770 0.91967 0.92867 0.92866 0.95096 0.94225 0.98438 0.93825 0.75078 0.78113 0.87295 0.88188 0.90060 0.89758 0.92219 0.89736 0.87619 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.48 37.15 0.35 -1.98 16 2 C 0.12 2.11 2.88 -67.93 -0.20 1.92 16 3 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 4 C 0.14 2.80 5.30 -4.05 -0.02 2.78 16 5 N -0.60 -14.82 2.82 -181.13 -0.51 -15.33 16 6 C 0.16 4.10 8.98 59.85 0.54 4.63 16 7 C -0.25 -6.73 8.85 -15.06 -0.13 -6.86 16 8 H 0.07 1.75 6.23 -52.49 -0.33 1.43 16 9 C 0.01 0.16 5.08 -17.43 -0.09 0.07 16 10 N -0.91 -26.78 10.72 55.49 0.59 -26.18 16 11 Si 0.90 22.78 29.58 -169.99 -5.03 17.75 16 12 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 14 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 15 N -0.68 -12.92 4.48 -54.85 -0.25 -13.16 16 16 C 0.60 11.31 7.78 -12.47 -0.10 11.21 16 17 O -0.56 -11.27 16.53 5.28 0.09 -11.18 16 18 C -0.09 -1.46 6.99 -83.55 -0.58 -2.05 16 19 C 0.09 1.08 11.27 -16.83 -0.19 0.89 16 20 N -0.37 -4.19 3.69 -61.06 -0.23 -4.41 16 21 C 0.13 0.88 5.93 -4.04 -0.02 0.85 16 22 C -0.14 -1.09 3.37 -88.61 -0.30 -1.39 16 23 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 24 C -0.15 -0.77 6.60 -25.20 -0.17 -0.94 16 25 C 0.05 0.34 7.70 37.73 0.29 0.63 16 26 O -0.38 -4.43 11.53 -35.23 -0.41 -4.83 16 27 C 0.06 0.60 6.09 38.21 0.23 0.84 16 28 N -0.07 -1.06 11.79 60.35 0.71 -0.35 16 29 N -0.19 -3.43 12.04 32.85 0.40 -3.03 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.98 8.07 -51.93 -0.42 0.56 16 34 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 35 H 0.03 0.83 7.36 -51.93 -0.38 0.45 16 36 H 0.04 1.08 7.31 -51.93 -0.38 0.70 16 37 H 0.00 -0.07 8.03 -51.93 -0.42 -0.48 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.95 16 39 H 0.41 8.19 6.19 -40.82 -0.25 7.94 16 40 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.11 0.37 8.08 -51.93 -0.42 -0.05 16 42 H 0.10 0.49 8.10 -51.93 -0.42 0.07 16 43 H 0.08 0.26 7.86 -51.93 -0.41 -0.14 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.11 1.41 7.30 -51.93 -0.38 1.03 16 48 H 0.07 0.64 8.02 -51.93 -0.42 0.22 16 LS Contribution 392.33 15.07 5.91 5.91 Total: -1.00 -34.76 392.33 -6.65 -41.41 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.55 Total: 2.81 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -0.39 Total: 10.60 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: 0.72 Total: -62.46 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.32 Total: -16.02 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.75 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.76 -6.65 -41.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275689432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.984 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds