Wall clock time and date at job start Tue Mar 31 2020 19:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47216 * 2 1 4 4 C 1.52999 * 109.47402 * 120.00416 * 2 1 3 5 5 N 1.46489 * 109.47308 * 175.00150 * 4 2 1 6 6 C 1.46501 * 120.00363 * 90.00173 * 5 4 2 7 7 C 1.36938 * 120.00319 * 269.99720 * 5 4 2 8 8 H 1.08000 * 119.99582 * 22.01159 * 7 5 4 9 9 C 1.38806 * 120.00613 * 202.01150 * 7 5 4 10 10 N 1.31621 * 119.99990 * 14.21670 * 9 7 5 11 11 Si 1.86797 * 120.00228 * 194.21770 * 9 7 5 12 12 H 1.48498 * 109.47216 * 59.99830 * 11 9 7 13 13 H 1.48500 * 109.47263 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47074 * 299.99976 * 11 9 7 15 15 N 1.46509 * 109.47094 * 240.00448 * 2 1 3 16 16 C 1.34774 * 119.99730 * 85.00205 * 15 2 1 17 17 O 1.21593 * 120.00426 * 359.97438 * 16 15 2 18 18 C 1.47529 * 119.99510 * 180.02562 * 16 15 2 19 19 C 1.36598 * 125.76571 * 180.30256 * 18 16 15 20 20 N 1.34815 * 106.83374 * 180.18014 * 19 18 16 21 21 C 1.46504 * 126.59513 * 179.85452 * 20 19 18 22 22 C 1.52991 * 109.47475 * 124.70921 * 21 20 19 23 23 H 1.09011 * 110.80397 * 302.82617 * 22 21 20 24 24 C 1.54814 * 110.94027 * 179.17853 * 22 21 20 25 25 C 1.54099 * 104.18572 * 220.90770 * 24 22 21 26 26 O 1.43885 * 107.37891 * 358.09907 * 25 24 22 27 27 C 1.44378 * 106.89907 * 26.27371 * 26 25 24 28 28 N 1.40209 * 106.81541 * 359.58690 * 20 19 18 29 29 N 1.28768 * 108.36382 * 0.26265 * 28 20 19 30 30 H 1.09000 * 109.47268 * 59.99734 * 1 2 3 31 31 H 1.09003 * 109.47501 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47383 * 299.99579 * 1 2 3 33 33 H 1.09006 * 109.46855 * 295.00154 * 4 2 1 34 34 H 1.08997 * 109.47144 * 54.99564 * 4 2 1 35 35 H 1.08992 * 109.47608 * 95.14004 * 6 5 4 36 36 H 1.09004 * 109.47342 * 215.14531 * 6 5 4 37 37 H 1.09001 * 109.46802 * 335.14160 * 6 5 4 38 38 H 0.97002 * 120.00562 * 180.02562 * 10 9 7 39 39 H 0.96994 * 119.99586 * 264.99740 * 15 2 1 40 40 H 1.07993 * 126.58705 * 0.02938 * 19 18 16 41 41 H 1.09003 * 109.46793 * 4.70772 * 21 20 19 42 42 H 1.08996 * 109.46694 * 244.71311 * 21 20 19 43 43 H 1.09002 * 110.48159 * 339.58275 * 24 22 21 44 44 H 1.09001 * 110.48873 * 102.09318 * 24 22 21 45 45 H 1.09005 * 109.87599 * 117.39313 * 25 24 22 46 46 H 1.08996 * 109.87685 * 238.39174 * 25 24 22 47 47 H 1.08996 * 110.62044 * 201.57737 * 27 26 25 48 48 H 1.09004 * 110.61888 * 78.73819 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4999 -0.8264 1.1905 6 6 4.3343 0.2340 1.7613 7 6 4.0850 -1.9158 0.6022 8 1 3.5312 -2.5055 -0.1134 9 6 5.3897 -2.2623 0.9254 10 7 5.9683 -1.7334 1.9826 11 14 6.3242 -3.4791 -0.1401 12 1 6.4260 -2.9494 -1.5237 13 1 7.6868 -3.6789 0.4154 14 1 5.6026 -4.7768 -0.1588 15 7 2.0183 -0.6906 -1.1963 16 6 2.1470 -0.0181 -2.3571 17 8 1.8574 1.1616 -2.4118 18 6 2.6382 -0.7136 -3.5619 19 6 2.8188 -0.1484 -4.7923 20 7 3.2732 -1.1222 -5.6064 21 6 3.6073 -0.9882 -7.0265 22 6 5.0450 -1.4570 -7.2587 23 1 5.7412 -0.8931 -6.6377 24 6 5.4273 -1.3489 -8.7550 25 6 6.2286 -2.6353 -9.0339 26 8 6.3214 -3.3610 -7.7949 27 6 5.1794 -2.9790 -6.9983 28 7 3.3706 -2.2864 -4.8311 29 7 2.9888 -2.0091 -3.6330 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.7516 -0.1584 2.1370 34 1 1.6054 -1.7198 1.2951 35 1 4.6181 -0.0350 2.7786 36 1 5.2312 0.3570 1.1542 37 1 3.7741 1.1689 1.7755 38 1 6.8802 -1.9751 2.2084 39 1 2.2490 -1.6317 -1.1527 40 1 2.6310 0.8803 -5.0619 41 1 3.5129 0.0559 -7.3250 42 1 2.9259 -1.5985 -7.6191 43 1 4.5321 -1.3148 -9.3759 44 1 6.0445 -0.4673 -8.9284 45 1 5.7102 -3.2410 -9.7772 46 1 7.2254 -2.3803 -9.3936 47 1 5.3661 -3.1728 -5.9421 48 1 4.2853 -3.5059 -7.3318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275689432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:28 Heat of formation + Delta-G solvation = 15.075633 kcal Electronic energy + Delta-G solvation = -29959.029755 eV Core-core repulsion = 25858.211022 eV Total energy + Delta-G solvation = -4100.818733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.22473 -40.59205 -40.32354 -38.02262 -36.33523 -35.72898 -33.45793 -33.14620 -32.24019 -31.26425 -30.24299 -28.04775 -27.59968 -27.37131 -25.06894 -23.92590 -23.45874 -22.92290 -22.04995 -21.57156 -21.13061 -19.35180 -18.52390 -17.70644 -17.25372 -17.17928 -16.95887 -16.86207 -16.54929 -16.15790 -15.71531 -15.62037 -15.45683 -15.27707 -14.95923 -14.75017 -14.54021 -14.14431 -13.78349 -13.68989 -13.45338 -13.20616 -13.08316 -12.84490 -12.75431 -12.68677 -12.61014 -12.46017 -12.39428 -12.18647 -12.04968 -11.95303 -11.89291 -11.76937 -11.74672 -11.29939 -11.06469 -10.72163 -10.60558 -10.34944 -9.83868 -8.74039 -7.80871 -5.25982 0.16418 0.69365 1.10599 1.41438 1.43999 1.50525 2.26855 2.43047 2.49707 2.86030 3.25722 3.32838 3.33277 3.47974 3.59405 3.71254 3.83587 3.93011 4.00691 4.08045 4.15288 4.19223 4.30950 4.39977 4.44166 4.50404 4.54443 4.70048 4.78337 4.79088 4.82922 4.85756 4.86796 4.91482 4.97276 5.03216 5.12424 5.19218 5.32034 5.46381 5.47276 5.63111 5.70151 5.74465 5.85782 6.33718 6.60689 6.96715 7.16619 7.29601 7.89442 8.33013 9.22233 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.003586 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.352019 B = 7805.700682 C = 9786.967358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.123 3.877 3 H 0.061 0.939 4 C 0.140 3.860 5 N -0.613 5.613 6 C 0.178 3.822 7 C -0.238 4.238 8 H 0.073 0.927 9 C -0.047 4.047 10 N -0.936 5.936 11 Si 0.948 3.052 12 H -0.294 1.294 13 H -0.296 1.296 14 H -0.273 1.273 15 N -0.685 5.685 16 C 0.598 3.402 17 O -0.578 6.578 18 C -0.124 4.124 19 C 0.112 3.888 20 N -0.351 5.351 21 C 0.125 3.875 22 C -0.135 4.135 23 H 0.077 0.923 24 C -0.132 4.132 25 C 0.033 3.967 26 O -0.413 6.413 27 C 0.052 3.948 28 N -0.089 5.089 29 N -0.231 5.231 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.009 0.991 36 H 0.007 0.993 37 H 0.028 0.972 38 H 0.245 0.755 39 H 0.406 0.594 40 H 0.242 0.758 41 H 0.155 0.845 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.067 0.933 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 4.941 -23.883 25.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 H 0.079 0.921 4 C 0.013 3.987 5 N -0.335 5.335 6 C 0.033 3.967 7 C -0.368 4.368 8 H 0.091 0.909 9 C -0.242 4.242 10 N -0.584 5.584 11 Si 0.778 3.222 12 H -0.222 1.222 13 H -0.223 1.223 14 H -0.199 1.199 15 N -0.334 5.334 16 C 0.383 3.617 17 O -0.459 6.459 18 C -0.264 4.264 19 C -0.046 4.046 20 N -0.136 5.136 21 C 0.007 3.993 22 C -0.154 4.154 23 H 0.096 0.904 24 C -0.170 4.170 25 C -0.043 4.043 26 O -0.333 6.333 27 C -0.025 4.025 28 N -0.070 5.070 29 N -0.104 5.104 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.242 0.758 40 H 0.258 0.742 41 H 0.173 0.827 42 H 0.144 0.856 43 H 0.131 0.869 44 H 0.118 0.882 45 H 0.091 0.909 46 H 0.108 0.892 47 H 0.085 0.915 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.079 4.076 -23.796 25.458 hybrid contribution 1.011 -0.159 -0.125 1.031 sum -7.068 3.917 -23.921 25.249 Atomic orbital electron populations 1.22017 0.93311 1.02562 1.02637 1.21805 0.94572 0.96654 0.85367 0.92103 1.21275 0.83197 0.99336 0.94868 1.44048 1.00980 1.20424 1.68071 1.20506 0.92292 0.87674 0.96276 1.19328 0.96720 1.04645 1.16116 0.90896 1.25488 0.99891 1.00935 0.97889 1.70195 1.13497 1.48326 1.26388 0.85625 0.78038 0.80210 0.78300 1.22168 1.22278 1.19879 1.45890 1.64111 1.14610 1.08766 1.16994 0.76986 0.85373 0.82329 1.90705 1.53980 1.15571 1.85604 1.21639 1.16014 0.91722 0.97055 1.23825 0.94541 0.97550 0.88654 1.50803 1.43354 1.07332 1.12108 1.22555 0.95999 1.07653 0.73116 1.23003 0.96313 0.96629 0.99492 0.90439 1.22919 1.02472 0.98920 0.92641 1.23461 1.01985 0.92472 0.86419 1.88926 1.46336 1.67651 1.30343 1.23638 0.89231 0.93920 0.95665 1.81868 1.22654 1.06265 0.96170 1.74686 1.08703 1.14457 1.12529 0.93200 0.91784 0.89663 0.90822 0.92322 0.97265 0.97427 0.95389 0.94573 0.75773 0.74221 0.82691 0.85627 0.86883 0.88204 0.90883 0.89169 0.91452 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.48 71.98 0.68 -3.30 16 2 C 0.12 4.32 2.88 44.99 0.13 4.45 16 3 H 0.06 2.38 7.58 -2.39 -0.02 2.36 16 4 C 0.14 5.38 5.30 86.38 0.46 5.84 16 5 N -0.61 -30.34 2.82 -726.97 -2.05 -32.39 16 6 C 0.18 9.00 8.98 127.77 1.15 10.15 16 7 C -0.24 -12.94 8.85 84.03 0.74 -12.20 16 8 H 0.07 3.84 6.23 -2.91 -0.02 3.82 16 9 C -0.05 -2.71 5.08 84.86 0.43 -2.28 16 10 N -0.94 -56.82 10.72 21.65 0.23 -56.58 16 11 Si 0.95 48.25 29.58 68.60 2.03 50.28 16 12 H -0.29 -15.33 7.11 99.48 0.71 -14.63 16 13 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 14 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 15 N -0.69 -26.03 4.48 -445.70 -2.00 -28.03 16 16 C 0.60 22.33 7.78 86.69 0.67 23.00 16 17 O -0.58 -22.78 16.53 -4.01 -0.07 -22.84 16 18 C -0.12 -4.09 6.99 40.82 0.29 -3.81 16 19 C 0.11 2.51 11.27 83.85 0.95 3.46 16 20 N -0.35 -7.16 3.69 -347.11 -1.28 -8.44 16 21 C 0.13 1.12 5.93 86.38 0.51 1.63 16 22 C -0.13 -1.80 3.37 -9.49 -0.03 -1.83 16 23 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 24 C -0.13 -0.90 6.60 31.59 0.21 -0.69 16 25 C 0.03 0.42 7.70 72.35 0.56 0.98 16 26 O -0.41 -9.74 11.53 -148.98 -1.72 -11.46 16 27 C 0.05 1.11 6.09 72.67 0.44 1.55 16 28 N -0.09 -2.73 11.79 37.02 0.44 -2.30 16 29 N -0.23 -8.36 12.04 -49.99 -0.60 -8.96 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 2.54 8.07 -2.38 -0.02 2.52 16 34 H 0.06 2.21 8.04 -2.39 -0.02 2.19 16 35 H 0.01 0.50 7.36 -2.39 -0.02 0.48 16 36 H 0.01 0.39 7.31 -2.39 -0.02 0.38 16 37 H 0.03 1.21 8.03 -2.39 -0.02 1.19 16 38 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.41 16.30 6.19 -92.71 -0.57 15.73 16 40 H 0.24 3.27 8.06 -2.91 -0.02 3.25 16 41 H 0.16 0.09 8.08 -2.39 -0.02 0.07 16 42 H 0.13 0.62 8.10 -2.39 -0.02 0.60 16 43 H 0.11 0.11 7.86 -2.39 -0.02 0.09 16 44 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 1.92 7.30 -2.39 -0.02 1.91 16 48 H 0.07 1.38 8.02 -2.39 -0.02 1.36 16 Total: -1.00 -79.91 392.33 2.56 -77.35 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.39 Total: 16.43 kcal Atomic # 6 Polarization: 19.77 SS G_CDS: 7.18 Total: 26.95 kcal Atomic # 7 Polarization: -131.44 SS G_CDS: -5.26 Total: -136.70 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -1.78 Total: -34.30 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -79.91 2.56 -77.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275689432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.422 kcal (2) G-P(sol) polarization free energy of solvation -79.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds