Wall clock time and date at job start Tue Mar 31 2020 19:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46693 * 2 1 4 4 C 1.53000 * 109.46889 * 240.00335 * 2 1 3 5 5 N 1.46510 * 109.46751 * 184.99802 * 4 2 1 6 6 C 1.46494 * 119.99647 * 269.99753 * 5 4 2 7 7 C 1.36935 * 119.99928 * 89.99634 * 5 4 2 8 8 H 1.08003 * 120.00291 * 20.30506 * 7 5 4 9 9 C 1.38806 * 119.99968 * 200.30045 * 7 5 4 10 10 N 1.31619 * 120.00170 * 15.02019 * 9 7 5 11 11 Si 1.86797 * 120.00227 * 195.01693 * 9 7 5 12 12 H 1.48504 * 109.47268 * 85.00418 * 11 9 7 13 13 H 1.48502 * 109.47429 * 205.00395 * 11 9 7 14 14 H 1.48508 * 109.47373 * 325.00513 * 11 9 7 15 15 N 1.46501 * 109.47245 * 119.99604 * 2 1 3 16 16 C 1.34773 * 120.00514 * 275.00068 * 15 2 1 17 17 O 1.21599 * 119.99496 * 0.02562 * 16 15 2 18 18 C 1.47518 * 120.00054 * 179.97438 * 16 15 2 19 19 C 1.36601 * 125.76636 * 180.02562 * 18 16 15 20 20 N 1.34819 * 106.83644 * 179.97438 * 19 18 16 21 21 C 1.46494 * 126.59392 * 180.02562 * 20 19 18 22 22 C 1.52998 * 109.47197 * 124.99456 * 21 20 19 23 23 H 1.08999 * 110.45801 * 52.40025 * 22 21 20 24 24 C 1.54513 * 110.51208 * 174.99727 * 22 21 20 25 25 C 1.54479 * 104.05973 * 118.64775 * 24 22 21 26 26 O 1.44423 * 104.80585 * 23.98227 * 25 24 22 27 27 C 1.44430 * 105.27315 * 319.48673 * 26 25 24 28 28 N 1.40213 * 106.81282 * 359.97438 * 20 19 18 29 29 N 1.28762 * 108.36232 * 359.74926 * 28 20 19 30 30 H 1.08993 * 109.47054 * 60.00046 * 1 2 3 31 31 H 1.09000 * 109.46654 * 299.99700 * 1 2 3 32 32 H 1.09004 * 109.46693 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47138 * 304.99185 * 4 2 1 34 34 H 1.08998 * 109.47494 * 65.00121 * 4 2 1 35 35 H 1.08997 * 109.47235 * 95.10469 * 6 5 4 36 36 H 1.09002 * 109.46958 * 215.10708 * 6 5 4 37 37 H 1.08993 * 109.47341 * 335.10313 * 6 5 4 38 38 H 0.97000 * 120.00336 * 179.97438 * 10 9 7 39 39 H 0.97007 * 119.99379 * 94.99985 * 15 2 1 40 40 H 1.07999 * 126.58324 * 0.02562 * 19 18 16 41 41 H 1.08997 * 109.47435 * 244.99716 * 21 20 19 42 42 H 1.09002 * 109.47165 * 4.99411 * 21 20 19 43 43 H 1.08999 * 110.51116 * 237.29179 * 24 22 21 44 44 H 1.08996 * 110.50999 * 0.02562 * 24 22 21 45 45 H 1.09004 * 110.37360 * 142.81305 * 25 24 22 46 46 H 1.09001 * 110.36980 * 265.14643 * 25 24 22 47 47 H 1.09009 * 110.37036 * 281.68121 * 27 26 25 48 48 H 1.08995 * 110.37037 * 159.34624 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.3343 0.2342 -1.7613 7 6 4.0851 -1.9157 -0.6023 8 1 3.5230 -2.8297 -0.4790 9 6 5.4004 -1.8454 -0.1646 10 7 5.9904 -0.6757 -0.0382 11 14 6.3334 -3.4110 0.2453 12 1 6.9260 -3.9732 -0.9949 13 1 7.4149 -3.1033 1.2152 14 1 5.4009 -4.4013 0.8413 15 7 2.0184 -0.6905 1.1962 16 6 2.1472 -0.0182 2.3572 17 8 1.8575 1.1615 2.4118 18 6 2.6384 -0.7138 3.5618 19 6 2.8130 -0.1501 4.7938 20 7 3.2731 -1.1225 5.6064 21 6 3.6063 -0.9888 7.0267 22 6 2.8241 -2.0268 7.8339 23 1 2.9722 -3.0234 7.4181 24 6 3.2501 -1.9911 9.3187 25 6 1.9548 -1.6149 10.0718 26 8 0.8846 -2.0277 9.1943 27 6 1.3219 -1.6680 7.8656 28 7 3.3704 -2.2867 4.8310 29 7 2.9834 -2.0107 3.6344 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6055 -1.7198 -1.2952 34 1 1.7517 -0.1582 -2.1370 35 1 4.6151 0.9372 -0.9772 36 1 5.2330 -0.2043 -2.1951 37 1 3.7755 0.7586 -2.5363 38 1 6.9094 -0.6265 0.2681 39 1 2.2491 -1.6318 1.1526 40 1 2.6188 0.8770 5.0650 41 1 4.6751 -1.1504 7.1660 42 1 3.3425 0.0119 7.3691 43 1 3.6064 -2.9706 9.6375 44 1 4.0176 -1.2337 9.4777 45 1 1.8971 -2.1514 11.0190 46 1 1.9132 -0.5389 10.2411 47 1 1.1831 -0.6001 7.6966 48 1 0.7780 -2.2452 7.1180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275689433.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:32 Heat of formation + Delta-G solvation = 39.547001 kcal Electronic energy + Delta-G solvation = -30072.910824 eV Core-core repulsion = 25973.153249 eV Total energy + Delta-G solvation = -4099.757575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.99190 -39.87338 -38.81186 -36.22137 -35.40147 -33.90653 -32.50982 -31.38230 -30.68023 -29.99280 -29.39175 -26.71959 -26.11354 -25.52309 -23.62438 -23.43415 -22.10137 -21.62350 -21.00769 -20.12110 -19.52810 -18.02066 -16.94879 -16.58709 -16.35092 -15.86575 -15.76524 -15.60702 -15.39862 -14.79335 -14.46170 -14.44551 -14.00610 -13.64329 -13.60538 -13.34039 -13.03762 -12.93628 -12.77228 -12.33338 -12.12264 -11.92890 -11.88712 -11.78933 -11.59709 -11.33372 -11.23716 -11.17144 -10.90837 -10.76090 -10.61072 -10.34565 -10.26874 -10.20510 -10.17572 -9.95760 -9.72992 -9.44184 -9.02066 -8.47107 -8.19191 -6.72499 -5.65929 -3.09192 1.32541 2.06875 2.15552 3.45134 3.47611 3.51343 3.53393 3.75932 3.92628 4.03215 4.07122 4.30650 4.45467 4.50697 4.57713 4.60427 4.75822 4.87703 4.95804 5.03284 5.17178 5.25035 5.29604 5.36885 5.43141 5.48076 5.49049 5.57343 5.67751 5.72463 5.91534 6.03811 6.13389 6.23103 6.31332 6.31997 6.45276 6.51721 6.56987 6.78961 6.93834 7.32066 7.43181 7.78530 7.86613 8.13150 8.42559 8.44635 8.94577 9.28732 9.93221 10.41252 11.38587 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013223 B = 0.003275 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.949405 B = 8548.470046 C = 9949.776522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.117 3.883 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.253 4.253 8 H 0.068 0.932 9 C 0.010 3.990 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.290 1.290 13 H -0.295 1.295 14 H -0.276 1.276 15 N -0.668 5.668 16 C 0.603 3.397 17 O -0.563 6.563 18 C -0.080 4.080 19 C 0.081 3.919 20 N -0.369 5.369 21 C 0.133 3.867 22 C -0.137 4.137 23 H 0.105 0.895 24 C -0.147 4.147 25 C 0.043 3.957 26 O -0.372 6.372 27 C 0.050 3.950 28 N -0.070 5.070 29 N -0.189 5.189 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.028 0.972 36 H 0.042 0.958 37 H -0.003 1.003 38 H 0.249 0.751 39 H 0.412 0.588 40 H 0.200 0.800 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.742 1.225 17.027 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.383 4.383 8 H 0.086 0.914 9 C -0.189 4.189 10 N -0.545 5.545 11 Si 0.726 3.274 12 H -0.217 1.217 13 H -0.221 1.221 14 H -0.201 1.201 15 N -0.316 5.316 16 C 0.387 3.613 17 O -0.443 6.443 18 C -0.219 4.219 19 C -0.075 4.075 20 N -0.155 5.155 21 C 0.012 3.988 22 C -0.157 4.157 23 H 0.123 0.877 24 C -0.185 4.185 25 C -0.034 4.034 26 O -0.291 6.291 27 C -0.027 4.027 28 N -0.050 5.050 29 N -0.062 5.062 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.015 0.985 38 H 0.060 0.940 39 H 0.249 0.751 40 H 0.217 0.783 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.112 0.888 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.564 0.498 17.142 18.743 hybrid contribution 1.011 0.027 0.457 1.110 sum -6.553 0.525 17.599 18.787 Atomic orbital electron populations 1.22162 0.96766 1.01380 1.01556 1.21904 0.91885 0.98411 0.86863 0.90385 1.21200 0.85998 0.98010 0.93504 1.43935 0.98891 1.22703 1.66517 1.20784 0.92887 0.90429 0.93979 1.19068 0.95840 0.89865 1.33501 0.91395 1.24870 0.98565 0.96085 0.99349 1.70099 1.12605 1.21788 1.50009 0.86396 0.79921 0.83602 0.77507 1.21701 1.22125 1.20084 1.45548 1.63392 1.14830 1.07879 1.16669 0.77350 0.85408 0.81899 1.90720 1.53280 1.15012 1.85256 1.21632 1.12992 0.91276 0.96019 1.23277 0.97388 0.96348 0.90444 1.50434 1.45541 1.09023 1.10495 1.22043 1.01538 1.00859 0.74398 1.22911 0.95792 1.01174 0.95802 0.87710 1.22957 0.98807 1.03699 0.93062 1.23454 0.85585 0.99794 0.94591 1.89172 1.40786 1.82458 1.16649 1.23505 0.93120 1.00280 0.85751 1.81965 1.22241 1.04395 0.96425 1.74716 1.07285 1.13453 1.10791 0.92177 0.92916 0.92923 0.93224 0.92844 0.95357 0.93899 0.98480 0.94033 0.75071 0.78323 0.88059 0.87724 0.89707 0.89822 0.88824 0.92037 0.91999 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.48 37.16 0.35 -2.10 16 2 C 0.12 2.25 2.88 -67.93 -0.20 2.05 16 3 H 0.08 1.69 7.58 -51.93 -0.39 1.29 16 4 C 0.14 2.79 5.36 -4.04 -0.02 2.76 16 5 N -0.60 -14.62 2.82 -181.12 -0.51 -15.13 16 6 C 0.16 4.06 9.02 59.84 0.54 4.60 16 7 C -0.25 -6.72 8.02 -15.06 -0.12 -6.84 16 8 H 0.07 1.77 7.86 -52.48 -0.41 1.36 16 9 C 0.01 0.29 5.06 -17.43 -0.09 0.20 16 10 N -0.90 -26.34 10.67 55.49 0.59 -25.75 16 11 Si 0.90 22.42 29.58 -169.99 -5.03 17.39 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 13 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 N -0.67 -13.77 4.48 -54.85 -0.25 -14.02 16 16 C 0.60 12.52 7.78 -12.48 -0.10 12.42 16 17 O -0.56 -12.44 16.53 5.28 0.09 -12.36 16 18 C -0.08 -1.48 6.99 -83.55 -0.58 -2.07 16 19 C 0.08 1.15 11.27 -16.83 -0.19 0.96 16 20 N -0.37 -4.71 3.58 -61.06 -0.22 -4.93 16 21 C 0.13 1.03 5.69 -4.05 -0.02 1.01 16 22 C -0.14 -1.06 3.24 -89.05 -0.29 -1.35 16 23 H 0.10 1.00 8.06 -51.93 -0.42 0.58 16 24 C -0.15 -0.80 6.74 -25.16 -0.17 -0.97 16 25 C 0.04 0.27 7.63 37.93 0.29 0.56 16 26 O -0.37 -3.71 11.65 -35.23 -0.41 -4.12 16 27 C 0.05 0.45 7.08 37.93 0.27 0.72 16 28 N -0.07 -1.19 13.57 60.35 0.82 -0.37 16 29 N -0.19 -3.69 12.04 32.84 0.40 -3.29 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 34 H 0.05 0.95 7.86 -51.93 -0.41 0.54 16 35 H 0.03 0.77 7.40 -51.93 -0.38 0.39 16 36 H 0.04 1.14 7.21 -51.93 -0.37 0.76 16 37 H 0.00 -0.07 7.83 -51.93 -0.41 -0.48 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.41 8.84 7.09 -40.82 -0.29 8.55 16 40 H 0.20 2.15 8.06 -52.49 -0.42 1.73 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.51 7.90 -51.93 -0.41 0.10 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.30 7.73 -51.93 -0.40 -0.10 16 45 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.49 7.75 -51.92 -0.40 0.08 16 48 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 396.29 15.07 5.97 5.97 Total: -1.00 -34.42 396.29 -6.53 -40.96 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -7.66 Total: 3.70 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -0.33 Total: 11.95 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: 0.83 Total: -63.50 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.32 Total: -16.48 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.39 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.42 -6.53 -40.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275689433.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.504 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds